Wall clock time and date at job start Tue Mar 31 2020 16:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30248 * 125.62016 * 2 1 4 4 C 1.34474 * 108.70353 * 179.97438 * 3 2 1 5 5 C 1.34334 * 107.66720 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.44310 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47601 * 90.02465 * 6 5 4 8 8 C 1.34777 * 120.00536 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99546 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00437 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00132 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46755 * 180.02562 * 11 10 8 13 13 C 1.38308 * 119.93231 * 269.72566 * 12 11 10 14 14 C 1.38100 * 120.07033 * 179.72730 * 13 12 11 15 15 C 1.38879 * 119.92719 * 0.57396 * 14 13 12 16 16 O 1.35748 * 120.07154 * 179.68076 * 15 14 13 17 17 C 1.34827 * 117.00400 * 174.48386 * 16 15 14 18 18 H 1.07996 * 119.99855 * 5.06433 * 17 16 15 19 19 C 1.38656 * 120.00007 * 185.05512 * 17 16 15 20 20 N 1.31553 * 120.00112 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47157 * 90.00106 * 21 19 17 23 23 H 1.48497 * 109.47113 * 210.00664 * 21 19 17 24 24 H 1.48503 * 109.47085 * 330.00227 * 21 19 17 25 25 C 1.38884 * 119.86547 * 359.70327 * 15 14 13 26 26 C 1.38106 * 119.92843 * 359.97438 * 25 15 14 27 27 O 1.33965 * 125.61511 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47039 * 270.02384 * 1 2 3 29 29 H 1.09000 * 109.47260 * 30.02112 * 1 2 3 30 30 H 1.09003 * 109.47115 * 150.02279 * 1 2 3 31 31 H 1.08004 * 126.16729 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46966 * 210.02587 * 6 5 4 33 33 H 1.08999 * 109.47166 * 330.02018 * 6 5 4 34 34 H 0.97003 * 119.99673 * 359.97438 * 7 6 5 35 35 H 0.97006 * 119.99634 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47581 * 300.00338 * 11 10 8 37 37 H 1.09008 * 109.47084 * 60.00807 * 11 10 8 38 38 H 1.07998 * 119.96089 * 359.97438 * 13 12 11 39 39 H 1.07995 * 120.03720 * 180.27269 * 14 13 12 40 40 H 0.96996 * 120.00275 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03666 * 179.97438 * 25 15 14 42 42 H 1.07999 * 119.96282 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5549 0.0003 7 7 5.1899 -1.8406 1.3814 8 6 6.2657 -2.6143 1.6276 9 8 6.9071 -3.0755 0.7034 10 7 6.6306 -2.8766 2.8982 11 6 7.7996 -3.7180 3.1657 12 6 7.9895 -3.8552 4.6544 13 6 8.7812 -2.9485 5.3356 14 6 8.9527 -3.0683 6.7007 15 6 8.3388 -4.1075 7.3876 16 8 8.5106 -4.2318 8.7284 17 6 7.7971 -5.1918 9.3507 18 1 7.1890 -5.8724 8.7734 19 6 7.8442 -5.3052 10.7318 20 7 8.5846 -4.4759 11.4351 21 14 6.8562 -6.6357 11.5939 22 1 7.6803 -7.8653 11.7133 23 1 6.4692 -6.1657 12.9483 24 1 5.6337 -6.9338 10.8053 25 6 7.5490 -5.0198 6.6999 26 6 7.3761 -4.8907 5.3358 27 8 2.2872 -1.0891 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.4157 1.3162 0.0011 32 1 4.5696 -2.4895 -0.5141 33 1 5.6081 -1.0439 -0.5131 34 1 4.6780 -1.4729 2.1187 35 1 6.1186 -2.5089 3.6355 36 1 7.6458 -4.7039 2.7270 37 1 8.6856 -3.2592 2.7269 38 1 9.2626 -2.1437 4.8000 39 1 9.5674 -2.3574 7.2327 40 1 8.6173 -4.5551 12.4012 41 1 7.0707 -5.8292 7.2312 42 1 6.7624 -5.6000 4.8004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365321351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:02 Heat of formation + Delta-G solvation = -7.502112 kcal Electronic energy + Delta-G solvation = -25937.152701 eV Core-core repulsion = 21884.996608 eV Total energy + Delta-G solvation = -4052.156093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.79703 -40.07399 -39.11106 -36.98462 -35.46553 -35.20695 -34.39593 -32.59335 -32.35260 -30.36526 -30.21592 -28.99836 -26.12588 -25.44339 -24.38234 -22.73565 -22.07780 -21.51780 -21.08090 -20.65535 -18.78773 -18.09435 -17.54040 -17.17952 -17.02900 -16.36416 -15.81857 -15.08092 -14.90761 -14.75406 -14.55667 -14.47936 -14.26113 -13.93982 -13.73163 -13.59806 -13.52677 -13.42186 -13.21975 -12.87958 -12.80987 -12.65585 -12.10261 -11.72363 -11.70576 -11.41847 -11.00024 -10.98953 -10.81835 -10.70923 -10.51183 -10.38551 -9.50275 -9.44550 -9.24468 -8.93558 -8.86653 -8.30928 -7.35822 -6.55210 -4.14130 0.84095 1.95911 2.10715 2.13942 2.20576 2.87172 3.07279 3.07915 3.12599 3.12724 3.58143 3.88358 4.17335 4.21191 4.52794 4.56094 4.66977 4.86261 4.96627 4.99676 5.03609 5.12822 5.16606 5.22537 5.41146 5.41817 5.57279 5.64407 5.79359 5.85983 5.88308 6.08853 6.09892 6.32942 6.50514 6.58088 6.75214 6.79286 6.95117 7.12882 7.25195 7.25882 7.32906 7.69013 7.89416 7.91649 8.49685 8.90064 9.58096 10.62232 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.001889 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.849954 B =14819.061702 C =15915.112000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.199 3.801 3 N -0.487 5.487 4 C -0.010 4.010 5 C -0.071 4.071 6 C 0.230 3.770 7 N -0.750 5.750 8 C 0.705 3.295 9 O -0.594 6.594 10 N -0.735 5.735 11 C 0.198 3.802 12 C -0.216 4.216 13 C -0.053 4.053 14 C -0.196 4.196 15 C 0.161 3.839 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.238 4.238 26 C -0.050 4.050 27 O -0.196 6.196 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.399 0.601 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.128 0.872 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.932 7.139 -20.283 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 N -0.217 5.217 4 C -0.150 4.150 5 C -0.125 4.125 6 C 0.106 3.894 7 N -0.408 5.408 8 C 0.405 3.595 9 O -0.473 6.473 10 N -0.390 5.390 11 C 0.075 3.925 12 C -0.217 4.217 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.257 4.257 26 C -0.069 4.069 27 O -0.083 6.083 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.205 0.795 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.359 7.403 -20.715 25.232 hybrid contribution -0.677 -0.971 1.218 1.698 sum -13.035 6.432 -19.497 24.319 Atomic orbital electron populations 1.20320 0.81072 1.05305 1.05008 1.26450 0.96636 0.78616 0.99101 1.70526 1.02037 1.30235 1.18915 1.23232 0.95286 0.92867 1.03627 1.23340 0.83650 0.95354 1.10107 1.19292 0.88440 0.97843 0.83838 1.45161 1.31813 1.55932 1.07923 1.15921 0.80477 0.79185 0.83956 1.90926 1.55941 1.56987 1.43430 1.45522 1.32936 1.55118 1.05397 1.19858 0.86492 0.93867 0.92267 1.19214 1.07552 1.01036 0.93907 1.20542 0.96502 0.97110 0.93047 1.20221 1.07140 1.00307 0.93846 1.19446 0.92152 0.92547 0.85263 1.83976 1.57830 1.51294 1.14449 1.21355 1.26097 1.09509 0.89996 0.88911 1.25325 0.97355 0.98414 0.95398 1.70031 1.36665 1.35349 1.07248 0.85691 0.79348 0.79500 0.78788 1.19776 1.20173 1.19146 1.21164 1.06690 1.03324 0.94519 1.20652 0.96603 0.96030 0.93573 1.84424 1.16526 1.37741 1.69572 0.88608 0.87929 0.89151 0.79530 0.89652 0.87971 0.76715 0.76774 0.91669 0.91578 0.86913 0.86366 0.91856 0.85423 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.20 1.65 8.34 -12.95 -0.11 1.55 16 3 N -0.49 -4.85 11.29 -11.10 -0.13 -4.98 16 4 C -0.01 -0.09 11.80 -17.77 -0.21 -0.30 16 5 C -0.07 -0.61 6.75 -35.69 -0.24 -0.85 16 6 C 0.23 1.94 6.22 -5.20 -0.03 1.91 16 7 N -0.75 -7.08 5.55 -66.42 -0.37 -7.45 16 8 C 0.70 8.99 8.57 -86.92 -0.74 8.24 16 9 O -0.59 -9.73 16.34 5.29 0.09 -9.64 16 10 N -0.73 -8.89 5.55 -66.42 -0.37 -9.26 16 11 C 0.20 2.70 5.80 -5.19 -0.03 2.67 16 12 C -0.22 -3.37 5.25 -104.57 -0.55 -3.92 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 14 C -0.20 -3.89 9.99 -39.39 -0.39 -4.28 16 15 C 0.16 3.69 6.65 -39.10 -0.26 3.43 16 16 O -0.17 -4.76 9.76 0.06 0.00 -4.76 16 17 C -0.39 -10.62 9.49 30.89 0.29 -10.32 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.50 13.67 55.48 0.76 -23.75 16 21 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 27 O -0.20 -1.82 10.78 5.36 0.06 -1.76 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.19 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.12 8.48 -40.82 -0.35 2.78 16 35 H 0.40 4.26 8.48 -40.82 -0.35 3.91 16 36 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.07 0.91 8.08 -51.92 -0.42 0.49 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -33.65 372.45 -7.53 -41.18 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.04 Total: 8.40 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.12 Total: -8.46 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.10 Total: -45.44 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.14 Total: -16.16 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.65 -7.53 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365321351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.682 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds