Wall clock time and date at job start Tue Mar 31 2020 16:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30248 * 125.62016 * 2 1 4 4 C 1.34474 * 108.70353 * 179.97438 * 3 2 1 5 5 C 1.34334 * 107.66720 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.44310 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47601 * 90.02465 * 6 5 4 8 8 C 1.34777 * 120.00536 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99546 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00437 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00132 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46755 * 180.02562 * 11 10 8 13 13 C 1.38308 * 119.93231 * 269.72566 * 12 11 10 14 14 C 1.38100 * 120.07033 * 179.72730 * 13 12 11 15 15 C 1.38879 * 119.92719 * 0.57396 * 14 13 12 16 16 O 1.35748 * 120.07154 * 179.68076 * 15 14 13 17 17 C 1.34827 * 117.00400 * 174.48386 * 16 15 14 18 18 H 1.07996 * 119.99855 * 5.06433 * 17 16 15 19 19 C 1.38656 * 120.00007 * 185.05512 * 17 16 15 20 20 N 1.31553 * 120.00112 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47157 * 90.00106 * 21 19 17 23 23 H 1.48497 * 109.47113 * 210.00664 * 21 19 17 24 24 H 1.48503 * 109.47085 * 330.00227 * 21 19 17 25 25 C 1.38884 * 119.86547 * 359.70327 * 15 14 13 26 26 C 1.38106 * 119.92843 * 359.97438 * 25 15 14 27 27 O 1.33965 * 125.61511 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47039 * 270.02384 * 1 2 3 29 29 H 1.09000 * 109.47260 * 30.02112 * 1 2 3 30 30 H 1.09003 * 109.47115 * 150.02279 * 1 2 3 31 31 H 1.08004 * 126.16729 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46966 * 210.02587 * 6 5 4 33 33 H 1.08999 * 109.47166 * 330.02018 * 6 5 4 34 34 H 0.97003 * 119.99673 * 359.97438 * 7 6 5 35 35 H 0.97006 * 119.99634 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47581 * 300.00338 * 11 10 8 37 37 H 1.09008 * 109.47084 * 60.00807 * 11 10 8 38 38 H 1.07998 * 119.96089 * 359.97438 * 13 12 11 39 39 H 1.07995 * 120.03720 * 180.27269 * 14 13 12 40 40 H 0.96996 * 120.00275 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03666 * 179.97438 * 25 15 14 42 42 H 1.07999 * 119.96282 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5549 0.0003 7 7 5.1899 -1.8406 1.3814 8 6 6.2657 -2.6143 1.6276 9 8 6.9071 -3.0755 0.7034 10 7 6.6306 -2.8766 2.8982 11 6 7.7996 -3.7180 3.1657 12 6 7.9895 -3.8552 4.6544 13 6 8.7812 -2.9485 5.3356 14 6 8.9527 -3.0683 6.7007 15 6 8.3388 -4.1075 7.3876 16 8 8.5106 -4.2318 8.7284 17 6 7.7971 -5.1918 9.3507 18 1 7.1890 -5.8724 8.7734 19 6 7.8442 -5.3052 10.7318 20 7 8.5846 -4.4759 11.4351 21 14 6.8562 -6.6357 11.5939 22 1 7.6803 -7.8653 11.7133 23 1 6.4692 -6.1657 12.9483 24 1 5.6337 -6.9338 10.8053 25 6 7.5490 -5.0198 6.6999 26 6 7.3761 -4.8907 5.3358 27 8 2.2872 -1.0891 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.4157 1.3162 0.0011 32 1 4.5696 -2.4895 -0.5141 33 1 5.6081 -1.0439 -0.5131 34 1 4.6780 -1.4729 2.1187 35 1 6.1186 -2.5089 3.6355 36 1 7.6458 -4.7039 2.7270 37 1 8.6856 -3.2592 2.7269 38 1 9.2626 -2.1437 4.8000 39 1 9.5674 -2.3574 7.2327 40 1 8.6173 -4.5551 12.4012 41 1 7.0707 -5.8292 7.2312 42 1 6.7624 -5.6000 4.8004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365321351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:01 Heat of formation + Delta-G solvation = -33.627866 kcal Electronic energy + Delta-G solvation = -25938.285599 eV Core-core repulsion = 21884.996608 eV Total energy + Delta-G solvation = -4053.288991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.43037 -41.16616 -40.67380 -38.56004 -36.35593 -35.86224 -35.58966 -34.28427 -33.14007 -31.84046 -31.45770 -29.81542 -27.66870 -26.60475 -25.52300 -23.64201 -23.37734 -22.27619 -22.10240 -21.96553 -19.91544 -19.69175 -18.86355 -18.20795 -17.80737 -17.26669 -16.82626 -16.39929 -16.30319 -16.04074 -15.74925 -15.52956 -15.35471 -15.27151 -14.94875 -14.75663 -14.43174 -14.34882 -14.06970 -13.87302 -13.79347 -13.61288 -13.27858 -13.19289 -13.02622 -12.55543 -12.38152 -12.36439 -12.21962 -12.11962 -11.67262 -11.50448 -11.20070 -10.81364 -10.44715 -9.87041 -9.84313 -9.78352 -9.01755 -8.48609 -6.16812 0.19351 0.54580 0.58260 1.35599 1.42478 1.46934 1.52626 1.58570 1.97045 2.12826 2.16804 2.80591 3.08506 3.13047 3.42613 3.48734 3.58303 3.88932 3.97322 4.04351 4.11902 4.18092 4.40562 4.48485 4.57470 4.62156 4.63319 4.65622 4.76700 4.81925 4.94360 5.01349 5.04961 5.14554 5.26991 5.28320 5.32268 5.46624 5.52946 5.69339 5.76090 5.91955 6.01315 6.16888 6.63857 6.96194 7.00775 7.52048 7.75636 8.74137 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.001889 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.849954 B =14819.061702 C =15915.112000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.199 3.801 3 N -0.520 5.520 4 C -0.014 4.014 5 C -0.077 4.077 6 C 0.235 3.765 7 N -0.737 5.737 8 C 0.707 3.293 9 O -0.629 6.629 10 N -0.729 5.729 11 C 0.204 3.796 12 C -0.182 4.182 13 C -0.042 4.042 14 C -0.205 4.205 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.918 5.918 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.245 4.245 26 C -0.045 4.045 27 O -0.208 6.208 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.205 0.795 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.409 0.591 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 7.003 -22.854 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.007 4.007 3 N -0.250 5.250 4 C -0.153 4.153 5 C -0.130 4.130 6 C 0.111 3.889 7 N -0.394 5.394 8 C 0.407 3.593 9 O -0.511 6.511 10 N -0.385 5.385 11 C 0.080 3.920 12 C -0.183 4.183 13 C -0.060 4.060 14 C -0.225 4.225 15 C 0.071 3.929 16 O -0.136 6.136 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.264 4.264 26 C -0.063 4.063 27 O -0.096 6.096 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.221 0.779 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.244 0.756 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.154 7.299 -23.341 28.256 hybrid contribution -0.172 -0.784 1.589 1.780 sum -14.326 6.515 -21.752 26.849 Atomic orbital electron populations 1.20585 0.78325 1.06619 1.06235 1.27339 0.98025 0.78034 0.97337 1.70557 1.02799 1.31180 1.20447 1.23569 0.95577 0.93219 1.02942 1.23280 0.83545 0.95262 1.10928 1.19304 0.88770 0.97741 0.83117 1.45038 1.30759 1.54798 1.08838 1.15936 0.80775 0.79192 0.83444 1.90913 1.57276 1.58471 1.44423 1.45254 1.32599 1.54922 1.05690 1.19749 0.87499 0.94648 0.90055 1.19502 1.04653 0.99085 0.95041 1.20898 0.95774 0.97819 0.91552 1.20461 1.06991 0.99676 0.95340 1.20007 0.93998 0.94453 0.84413 1.83946 1.60138 1.52816 1.16658 1.21824 1.26433 1.09907 0.90738 0.87906 1.26587 0.98519 1.00997 0.95936 1.70175 1.39649 1.38301 1.07508 0.84594 0.78042 0.76197 0.77449 1.18909 1.19682 1.17574 1.21250 1.06427 1.02726 0.96008 1.20952 0.96462 0.96800 0.92131 1.84428 1.16916 1.38335 1.69891 0.87253 0.86928 0.87486 0.77861 0.90149 0.86997 0.75586 0.75723 0.91258 0.90818 0.83377 0.86703 0.91809 0.86243 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.20 2.99 8.34 88.34 0.74 3.73 16 3 N -0.52 -9.64 11.29 -303.83 -3.43 -13.07 16 4 C -0.01 -0.22 11.80 83.40 0.98 0.77 16 5 C -0.08 -1.20 6.75 24.79 0.17 -1.03 16 6 C 0.23 3.49 6.22 85.63 0.53 4.02 16 7 N -0.74 -11.99 5.55 -482.32 -2.68 -14.66 16 8 C 0.71 15.93 8.57 179.06 1.53 17.46 16 9 O -0.63 -18.99 16.34 -3.97 -0.06 -19.05 16 10 N -0.73 -14.98 5.55 -482.31 -2.68 -17.66 16 11 C 0.20 4.74 5.80 85.63 0.50 5.23 16 12 C -0.18 -5.05 5.25 -19.83 -0.10 -5.15 16 13 C -0.04 -1.26 9.69 22.25 0.22 -1.05 16 14 C -0.21 -8.13 9.99 22.39 0.22 -7.91 16 15 C 0.12 5.77 6.65 22.58 0.15 5.92 16 16 O -0.23 -13.36 9.76 -22.69 -0.22 -13.59 16 17 C -0.41 -23.33 9.49 67.92 0.64 -22.68 16 18 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 19 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 20 N -0.92 -55.29 13.67 21.61 0.30 -54.99 16 21 Si 1.02 41.76 29.55 68.60 2.03 43.79 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 25 C -0.24 -9.96 9.17 22.39 0.21 -9.75 16 26 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 27 O -0.21 -3.54 10.78 -3.74 -0.04 -3.58 16 28 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 5.26 8.48 -92.71 -0.79 4.48 16 35 H 0.41 7.16 8.48 -92.70 -0.79 6.37 16 36 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 37 H 0.07 1.70 8.08 -2.38 -0.02 1.68 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 42 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -77.25 372.45 -0.06 -77.31 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.48 Total: 27.50 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 7.22 Total: -12.00 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -8.49 Total: -100.38 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.33 Total: -36.22 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -77.25 -0.06 -77.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365321351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.680 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds