Wall clock time and date at job start Tue Mar 31 2020 17:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47416 * 2 1 4 4 C 1.53006 * 109.47037 * 119.99791 * 2 1 3 5 5 N 1.46491 * 109.47085 * 305.00040 * 4 2 1 6 6 C 1.34784 * 120.00036 * 179.97438 * 5 4 2 7 7 O 1.21579 * 119.99672 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00239 * 180.02562 * 6 5 4 9 9 C 1.39454 * 120.00232 * 184.81893 * 8 6 5 10 10 C 1.38644 * 119.64992 * 185.82782 * 9 8 6 11 11 C 1.40826 * 118.67290 * 179.72967 * 10 9 8 12 12 C 1.41542 * 120.99716 * 180.25442 * 11 10 9 13 13 H 1.08004 * 119.99848 * 146.64534 * 12 11 10 14 14 C 1.40029 * 119.99933 * 326.65259 * 12 11 10 15 15 N 1.30748 * 119.99864 * 168.31162 * 14 12 11 16 16 Si 1.86803 * 120.00247 * 348.30795 * 14 12 11 17 17 H 1.48500 * 109.46824 * 92.68469 * 16 14 12 18 18 H 1.48493 * 109.47301 * 212.69007 * 16 14 12 19 19 H 1.48502 * 109.46910 * 332.69018 * 16 14 12 20 20 C 1.41161 * 118.00609 * 0.27160 * 11 10 9 21 21 C 1.36598 * 119.12605 * 0.02562 * 20 11 10 22 22 N 1.32065 * 121.25890 * 0.02562 * 21 20 11 23 23 C 1.50697 * 109.47160 * 240.00065 * 2 1 3 24 24 C 1.34513 * 125.78966 * 90.00477 * 23 2 1 25 25 C 1.41389 * 106.84159 * 179.97438 * 24 23 2 26 26 C 1.34516 * 106.83707 * 0.02562 * 25 24 23 27 27 O 1.34302 * 125.78870 * 269.68971 * 23 2 1 28 28 H 1.09002 * 109.47294 * 300.00398 * 1 2 3 29 29 H 1.09001 * 109.46638 * 60.00043 * 1 2 3 30 30 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 31 31 H 0.96699 * 114.00293 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47214 * 184.99943 * 4 2 1 33 33 H 1.09004 * 109.46808 * 65.00475 * 4 2 1 34 34 H 0.97001 * 120.00421 * 0.02562 * 5 4 2 35 35 H 0.97005 * 119.99696 * 4.82089 * 8 6 5 36 36 H 1.07996 * 120.66466 * 0.02562 * 10 9 8 37 37 H 0.97002 * 119.99208 * 179.97438 * 15 14 12 38 38 H 1.07998 * 120.43763 * 179.97438 * 20 11 10 39 39 H 1.08000 * 119.36777 * 179.97438 * 21 20 11 40 40 H 1.08000 * 126.58388 * 359.96022 * 24 23 2 41 41 H 1.07994 * 126.58515 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.78699 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1036 2.4423 6 6 1.7639 -0.5774 3.6660 7 8 2.5263 -1.5177 3.7795 8 7 1.2262 -0.0096 4.7636 9 6 1.6212 -0.4327 6.0323 10 6 0.9780 0.0685 7.1536 11 6 1.3897 -0.3773 8.4244 12 6 0.7637 0.0979 9.6016 13 1 0.6592 -0.5522 10.4578 14 6 0.2799 1.4108 9.6562 15 7 -0.4941 1.7817 10.6425 16 14 0.7402 2.6322 8.3199 17 1 -0.2976 2.6184 7.2579 18 1 0.8322 3.9941 8.9045 19 1 2.0520 2.2549 7.7350 20 6 2.4455 -1.3120 8.4891 21 6 3.0228 -1.7442 7.3290 22 7 2.6119 -1.3040 6.1536 23 6 2.0323 -0.7104 -1.2304 24 6 2.2946 -0.1362 -2.4183 25 6 2.7409 -1.1641 -3.2804 26 6 2.7241 -2.3050 -2.5680 27 8 2.2997 -2.0231 -1.3253 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9704 1.4236 0.0004 32 1 3.1263 -0.6443 1.2953 33 1 1.7516 -1.7715 1.2056 34 1 0.8467 0.6458 2.3517 35 1 0.5643 0.6935 4.6710 36 1 0.1742 0.7828 7.0543 37 1 -0.8290 2.6913 10.6804 38 1 2.7929 -1.6799 9.4432 39 1 3.8312 -2.4590 7.3739 40 1 2.1851 0.9092 -2.6660 41 1 3.0376 -1.0546 -4.3131 42 1 3.0088 -3.2811 -2.9319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366305109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:39 Heat of formation + Delta-G solvation = -14.235021 kcal Electronic energy + Delta-G solvation = -27438.560315 eV Core-core repulsion = 23386.112261 eV Total energy + Delta-G solvation = -4052.448054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.97539 -40.12908 -38.83109 -37.92177 -34.64943 -34.17953 -33.75926 -33.24401 -32.07042 -31.26731 -29.20278 -28.76525 -26.78410 -25.94448 -23.03766 -22.34420 -22.10243 -21.48106 -20.54209 -20.13058 -18.64481 -18.34664 -17.71433 -16.87516 -16.48468 -16.15015 -15.62683 -15.50097 -15.21106 -14.75947 -14.65419 -14.48417 -14.12937 -13.65606 -13.44395 -13.22185 -13.13836 -13.08132 -12.94025 -12.86708 -12.80647 -12.48253 -12.20338 -11.73212 -11.59611 -10.99184 -10.83575 -10.77027 -10.66117 -10.26397 -10.07645 -9.92077 -9.72557 -9.37465 -8.98181 -8.88281 -8.18489 -7.91154 -7.25401 -7.01444 -4.72294 1.33564 2.25391 2.39524 2.53084 2.63415 2.78056 3.01400 3.13239 3.25004 3.66748 3.72017 3.89995 4.10866 4.25344 4.42764 4.53715 4.61425 4.70082 4.78463 5.24563 5.32018 5.38772 5.41787 5.49721 5.52562 5.58401 5.68455 5.73089 5.77467 6.11629 6.24172 6.34750 6.41732 6.48929 6.56071 6.72531 6.93815 7.03270 7.10325 7.18675 7.29374 7.66293 7.93946 8.17748 8.23619 8.44762 8.67230 8.96888 9.46804 10.00344 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.002514 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.919978 B =11133.900277 C =11980.572700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.209 3.791 3 O -0.537 6.537 4 C 0.120 3.880 5 N -0.747 5.747 6 C 0.694 3.306 7 O -0.529 6.529 8 N -0.672 5.672 9 C 0.386 3.614 10 C -0.318 4.318 11 C 0.130 3.870 12 C -0.441 4.441 13 H 0.096 0.904 14 C 0.085 3.915 15 N -0.807 5.807 16 Si 0.916 3.084 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.245 1.245 20 C -0.269 4.269 21 C 0.129 3.871 22 N -0.552 5.552 23 C -0.046 4.046 24 C -0.188 4.188 25 C -0.219 4.219 26 C -0.033 4.033 27 O -0.166 6.166 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.385 0.615 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.396 0.604 35 H 0.404 0.596 36 H 0.109 0.891 37 H 0.287 0.713 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -0.014 -24.468 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 O -0.343 6.343 4 C -0.005 4.005 5 N -0.407 5.407 6 C 0.393 3.607 7 O -0.399 6.399 8 N -0.319 5.319 9 C 0.157 3.843 10 C -0.344 4.344 11 C 0.122 3.878 12 C -0.471 4.471 13 H 0.114 0.886 14 C -0.135 4.135 15 N -0.432 5.432 16 Si 0.743 3.257 17 H -0.197 1.197 18 H -0.218 1.218 19 H -0.169 1.169 20 C -0.292 4.292 21 C -0.023 4.023 22 N -0.272 5.272 23 C -0.098 4.098 24 C -0.207 4.207 25 C -0.238 4.238 26 C -0.101 4.101 27 O -0.062 6.062 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.231 0.769 35 H 0.239 0.761 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.223 -1.140 -24.754 24.880 hybrid contribution -0.308 1.620 -0.132 1.654 sum 1.915 0.480 -24.886 24.965 Atomic orbital electron populations 1.21797 0.90194 1.03598 1.03750 1.19607 0.95364 0.81208 0.87120 1.86610 1.27879 1.23547 1.96298 1.21696 0.98605 0.97694 0.82515 1.45057 1.52918 1.38489 1.04236 1.16002 0.81636 0.83065 0.79948 1.91027 1.36835 1.27565 1.84523 1.42612 1.44749 1.40926 1.03650 1.17753 0.91749 0.92669 0.82096 1.21235 1.07931 1.13158 0.92033 1.17718 0.88732 0.89552 0.91837 1.19471 1.30414 0.97823 0.99438 0.88644 1.26153 0.91330 0.99743 0.96268 1.69615 1.23231 1.20253 1.30099 0.86237 0.81653 0.77681 0.80160 1.19693 1.21827 1.16862 1.21732 1.01632 1.07617 0.98267 1.21634 0.97111 0.96182 0.87362 1.67278 1.15900 1.16665 1.27325 1.22961 1.06290 0.82005 0.98494 1.21582 1.05473 1.01050 0.92576 1.21879 1.07689 0.92604 1.01608 1.24162 1.03054 1.00742 0.82186 1.84067 1.64889 1.25437 1.31815 0.90591 0.90969 0.90222 0.76556 0.90995 0.90085 0.76943 0.76134 0.87359 0.90292 0.87141 0.85333 0.83100 0.83317 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.60 37.16 0.32 -0.77 16 2 C 0.21 1.86 1.01 -91.77 -0.09 1.77 16 3 O -0.54 -4.45 12.54 -35.23 -0.44 -4.89 16 4 C 0.12 1.39 4.63 -4.04 -0.02 1.37 16 5 N -0.75 -9.57 5.19 -65.23 -0.34 -9.91 16 6 C 0.69 12.67 8.51 -86.92 -0.74 11.93 16 7 O -0.53 -11.99 14.64 5.30 0.08 -11.91 16 8 N -0.67 -12.52 5.39 -15.86 -0.09 -12.61 16 9 C 0.39 8.91 7.40 -154.68 -1.15 7.76 16 10 C -0.32 -7.55 6.96 -38.45 -0.27 -7.82 16 11 C 0.13 3.28 5.09 -106.55 -0.54 2.73 16 12 C -0.44 -11.63 9.66 -37.65 -0.36 -11.99 16 13 H 0.10 2.63 8.06 -52.48 -0.42 2.20 16 14 C 0.08 2.15 5.48 -17.34 -0.10 2.06 16 15 N -0.81 -20.89 13.92 55.55 0.77 -20.12 16 16 Si 0.92 20.12 24.49 -169.99 -4.16 15.96 16 17 H -0.27 -5.56 6.71 56.52 0.38 -5.18 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.25 -5.65 6.70 56.52 0.38 -5.28 16 20 C -0.27 -6.29 9.85 -39.07 -0.38 -6.67 16 21 C 0.13 2.94 11.10 -18.04 -0.20 2.74 16 22 N -0.55 -13.53 7.90 -12.76 -0.10 -13.63 16 23 C -0.05 -0.44 5.86 -35.63 -0.21 -0.64 16 24 C -0.19 -1.61 10.36 -39.70 -0.41 -2.02 16 25 C -0.22 -1.68 10.91 -39.70 -0.43 -2.11 16 26 C -0.03 -0.26 12.09 29.42 0.36 0.10 16 27 O -0.17 -1.69 10.15 5.71 0.06 -1.63 16 28 H 0.08 0.57 6.57 -51.93 -0.34 0.22 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.39 2.29 9.04 45.56 0.41 2.71 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.40 4.04 7.01 -40.82 -0.29 3.76 16 35 H 0.40 6.03 8.72 -40.82 -0.36 5.67 16 36 H 0.11 2.45 4.79 -52.49 -0.25 2.20 16 37 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 38 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -33.78 357.37 -7.28 -41.06 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.22 Total: 13.86 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -4.23 Total: -1.57 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.25 Total: -56.27 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.31 Total: -18.43 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.16 Total: 15.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.78 -7.28 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366305109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.826 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds