Wall clock time and date at job start Tue Mar 31 2020 17:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47416 * 2 1 4 4 C 1.53006 * 109.47037 * 119.99791 * 2 1 3 5 5 N 1.46491 * 109.47085 * 305.00040 * 4 2 1 6 6 C 1.34784 * 120.00036 * 179.97438 * 5 4 2 7 7 O 1.21579 * 119.99672 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00239 * 180.02562 * 6 5 4 9 9 C 1.39454 * 120.00232 * 184.81893 * 8 6 5 10 10 C 1.38644 * 119.64992 * 185.82782 * 9 8 6 11 11 C 1.40826 * 118.67290 * 179.72967 * 10 9 8 12 12 C 1.41542 * 120.99716 * 180.25442 * 11 10 9 13 13 H 1.08004 * 119.99848 * 146.64534 * 12 11 10 14 14 C 1.40029 * 119.99933 * 326.65259 * 12 11 10 15 15 N 1.30748 * 119.99864 * 168.31162 * 14 12 11 16 16 Si 1.86803 * 120.00247 * 348.30795 * 14 12 11 17 17 H 1.48500 * 109.46824 * 92.68469 * 16 14 12 18 18 H 1.48493 * 109.47301 * 212.69007 * 16 14 12 19 19 H 1.48502 * 109.46910 * 332.69018 * 16 14 12 20 20 C 1.41161 * 118.00609 * 0.27160 * 11 10 9 21 21 C 1.36598 * 119.12605 * 0.02562 * 20 11 10 22 22 N 1.32065 * 121.25890 * 0.02562 * 21 20 11 23 23 C 1.50697 * 109.47160 * 240.00065 * 2 1 3 24 24 C 1.34513 * 125.78966 * 90.00477 * 23 2 1 25 25 C 1.41389 * 106.84159 * 179.97438 * 24 23 2 26 26 C 1.34516 * 106.83707 * 0.02562 * 25 24 23 27 27 O 1.34302 * 125.78870 * 269.68971 * 23 2 1 28 28 H 1.09002 * 109.47294 * 300.00398 * 1 2 3 29 29 H 1.09001 * 109.46638 * 60.00043 * 1 2 3 30 30 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 31 31 H 0.96699 * 114.00293 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47214 * 184.99943 * 4 2 1 33 33 H 1.09004 * 109.46808 * 65.00475 * 4 2 1 34 34 H 0.97001 * 120.00421 * 0.02562 * 5 4 2 35 35 H 0.97005 * 119.99696 * 4.82089 * 8 6 5 36 36 H 1.07996 * 120.66466 * 0.02562 * 10 9 8 37 37 H 0.97002 * 119.99208 * 179.97438 * 15 14 12 38 38 H 1.07998 * 120.43763 * 179.97438 * 20 11 10 39 39 H 1.08000 * 119.36777 * 179.97438 * 21 20 11 40 40 H 1.08000 * 126.58388 * 359.96022 * 24 23 2 41 41 H 1.07994 * 126.58515 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.78699 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1036 2.4423 6 6 1.7639 -0.5774 3.6660 7 8 2.5263 -1.5177 3.7795 8 7 1.2262 -0.0096 4.7636 9 6 1.6212 -0.4327 6.0323 10 6 0.9780 0.0685 7.1536 11 6 1.3897 -0.3773 8.4244 12 6 0.7637 0.0979 9.6016 13 1 0.6592 -0.5522 10.4578 14 6 0.2799 1.4108 9.6562 15 7 -0.4941 1.7817 10.6425 16 14 0.7402 2.6322 8.3199 17 1 -0.2976 2.6184 7.2579 18 1 0.8322 3.9941 8.9045 19 1 2.0520 2.2549 7.7350 20 6 2.4455 -1.3120 8.4891 21 6 3.0228 -1.7442 7.3290 22 7 2.6119 -1.3040 6.1536 23 6 2.0323 -0.7104 -1.2304 24 6 2.2946 -0.1362 -2.4183 25 6 2.7409 -1.1641 -3.2804 26 6 2.7241 -2.3050 -2.5680 27 8 2.2997 -2.0231 -1.3253 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9704 1.4236 0.0004 32 1 3.1263 -0.6443 1.2953 33 1 1.7516 -1.7715 1.2056 34 1 0.8467 0.6458 2.3517 35 1 0.5643 0.6935 4.6710 36 1 0.1742 0.7828 7.0543 37 1 -0.8290 2.6913 10.6804 38 1 2.7929 -1.6799 9.4432 39 1 3.8312 -2.4590 7.3739 40 1 2.1851 0.9092 -2.6660 41 1 3.0376 -1.0546 -4.3131 42 1 3.0088 -3.2811 -2.9319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366305109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:38 Heat of formation + Delta-G solvation = -39.800802 kcal Electronic energy + Delta-G solvation = -27439.668930 eV Core-core repulsion = 23386.112261 eV Total energy + Delta-G solvation = -4053.556669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.60591 -41.61243 -40.21319 -39.07369 -36.19338 -35.55894 -35.44886 -33.87129 -33.20576 -32.86169 -30.70666 -29.53386 -28.02129 -27.61190 -24.16997 -24.06507 -22.98084 -22.54003 -21.75061 -21.16498 -19.98084 -19.51211 -19.04922 -18.20116 -17.40598 -17.17357 -17.09202 -16.75919 -16.48850 -16.11763 -15.96419 -15.79073 -15.64973 -14.96899 -14.81618 -14.73979 -14.59764 -14.06945 -13.79831 -13.71658 -13.48624 -13.44585 -13.33718 -12.93590 -12.76027 -12.63861 -12.59729 -12.42340 -11.85629 -11.59078 -11.50679 -11.39546 -11.17305 -10.87771 -10.21392 -10.08686 -9.73352 -9.49360 -8.98760 -8.91760 -6.71572 0.59796 0.70903 0.76844 1.25096 1.40520 1.44327 1.49750 1.67954 1.96309 2.11335 2.17577 2.71600 2.91910 3.19469 3.38087 3.52429 3.65520 3.80156 3.99861 4.13554 4.25276 4.43216 4.50946 4.58021 4.61535 4.66555 4.69182 4.76151 4.76901 4.90661 5.00107 5.09354 5.13883 5.17195 5.28881 5.34502 5.51953 5.56470 5.67614 5.82694 6.11800 6.12367 6.28542 6.52626 6.53844 6.70514 6.86853 7.48802 7.73697 8.14590 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.002514 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.919978 B =11133.900277 C =11980.572700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.223 3.777 3 O -0.538 6.538 4 C 0.122 3.878 5 N -0.721 5.721 6 C 0.693 3.307 7 O -0.575 6.575 8 N -0.663 5.663 9 C 0.384 3.616 10 C -0.321 4.321 11 C 0.115 3.885 12 C -0.471 4.471 13 H 0.066 0.934 14 C 0.050 3.950 15 N -0.841 5.841 16 Si 0.967 3.033 17 H -0.242 1.242 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.279 4.279 21 C 0.129 3.871 22 N -0.572 5.572 23 C -0.066 4.066 24 C -0.189 4.189 25 C -0.228 4.228 26 C -0.038 4.038 27 O -0.189 6.189 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.396 0.604 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.422 0.578 36 H 0.120 0.880 37 H 0.297 0.703 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 1.088 -27.356 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.181 3.819 3 O -0.346 6.346 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.393 3.607 7 O -0.449 6.449 8 N -0.312 5.312 9 C 0.154 3.846 10 C -0.347 4.347 11 C 0.106 3.894 12 C -0.502 4.502 13 H 0.084 0.916 14 C -0.166 4.166 15 N -0.467 5.467 16 Si 0.790 3.210 17 H -0.167 1.167 18 H -0.205 1.205 19 H -0.187 1.187 20 C -0.302 4.302 21 C -0.023 4.023 22 N -0.291 5.291 23 C -0.116 4.116 24 C -0.208 4.208 25 C -0.246 4.246 26 C -0.105 4.105 27 O -0.086 6.086 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.246 0.754 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.166 0.012 -27.686 27.770 hybrid contribution -0.235 1.172 0.669 1.370 sum 1.930 1.184 -27.017 27.111 Atomic orbital electron populations 1.21841 0.89449 1.03769 1.04479 1.19399 0.95787 0.81095 0.85610 1.86595 1.28989 1.22893 1.96159 1.21762 0.98122 0.97418 0.82962 1.44811 1.52218 1.38229 1.02820 1.16147 0.81103 0.82566 0.80912 1.90998 1.38896 1.29669 1.85351 1.42480 1.45024 1.41247 1.02476 1.17943 0.91121 0.91966 0.83610 1.21310 1.08245 1.13411 0.91736 1.17909 0.89135 0.90195 0.92112 1.19442 1.32800 0.98596 0.99325 0.91620 1.26834 0.90909 1.00677 0.98197 1.69636 1.24157 1.21363 1.31511 0.85464 0.81055 0.75987 0.78480 1.16671 1.20475 1.18655 1.21925 1.01511 1.07529 0.99260 1.22100 0.97383 0.96100 0.86699 1.67414 1.16534 1.17158 1.28005 1.23028 1.07609 0.82068 0.98930 1.21815 1.04776 1.01749 0.92447 1.22211 1.07556 0.92300 1.02581 1.24865 1.02084 1.02231 0.81355 1.84056 1.65486 1.25888 1.33128 0.89924 0.90161 0.90384 0.75378 0.91884 0.91430 0.74981 0.73969 0.86235 0.89217 0.86024 0.82391 0.82127 0.81274 0.75020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.60 71.98 0.62 -1.31 16 2 C 0.22 3.60 1.01 -11.54 -0.01 3.58 16 3 O -0.54 -7.66 12.54 -148.98 -1.87 -9.53 16 4 C 0.12 2.69 4.63 86.38 0.40 3.09 16 5 N -0.72 -17.10 5.19 -478.54 -2.49 -19.58 16 6 C 0.69 24.28 8.51 179.05 1.52 25.80 16 7 O -0.58 -25.70 14.64 -3.96 -0.06 -25.76 16 8 N -0.66 -23.42 5.39 -322.37 -1.74 -25.16 16 9 C 0.38 17.22 7.40 132.76 0.98 18.20 16 10 C -0.32 -14.94 6.96 23.00 0.16 -14.78 16 11 C 0.12 5.82 5.09 -21.11 -0.11 5.71 16 12 C -0.47 -25.49 9.66 23.52 0.23 -25.27 16 13 H 0.07 3.82 8.06 -2.91 -0.02 3.79 16 14 C 0.05 2.56 5.48 85.29 0.47 3.03 16 15 N -0.84 -43.94 13.92 21.84 0.30 -43.64 16 16 Si 0.97 40.30 24.49 68.60 1.68 41.98 16 17 H -0.24 -8.92 6.71 99.48 0.67 -8.26 16 18 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.26 -11.62 6.70 99.48 0.67 -10.95 16 20 C -0.28 -13.04 9.85 22.60 0.22 -12.82 16 21 C 0.13 5.77 11.10 84.27 0.94 6.70 16 22 N -0.57 -27.45 7.90 -194.27 -1.53 -28.98 16 23 C -0.07 -1.14 5.86 24.83 0.15 -1.00 16 24 C -0.19 -2.87 10.36 22.19 0.23 -2.64 16 25 C -0.23 -3.00 10.91 22.19 0.24 -2.76 16 26 C -0.04 -0.52 12.09 66.97 0.81 0.29 16 27 O -0.19 -3.64 10.15 -2.49 -0.03 -3.66 16 28 H 0.08 1.01 6.57 -2.39 -0.02 0.99 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.40 3.87 9.04 -74.06 -0.67 3.20 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 34 H 0.41 7.25 7.01 -92.71 -0.65 6.60 16 35 H 0.42 11.39 8.72 -92.70 -0.81 10.58 16 36 H 0.12 5.18 4.79 -2.91 -0.01 5.17 16 37 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 38 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 39 H 0.16 5.97 8.06 -2.91 -0.02 5.94 16 40 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -73.37 357.37 0.02 -73.35 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -1.10 Total: 35.16 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.85 Total: 5.83 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -5.46 Total: -117.37 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -1.95 Total: -38.95 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.68 Total: 41.98 kcal Total: -73.37 0.02 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366305109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.548 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds