Wall clock time and date at job start Tue Mar 31 2020 16:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35442 * 128.00734 * 2 1 4 4 O 1.34047 * 106.44805 * 180.02562 * 3 2 1 5 5 N 1.20925 * 111.56467 * 0.02562 * 4 3 2 6 6 C 1.30173 * 111.60240 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.80021 * 179.73656 * 6 5 4 8 8 N 1.46503 * 109.47028 * 90.02176 * 7 6 5 9 9 C 1.34779 * 120.00214 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99667 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00038 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99804 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46934 * 180.02562 * 12 11 9 14 14 C 1.38300 * 119.92745 * 269.72282 * 13 12 11 15 15 C 1.38102 * 120.06892 * 179.72884 * 14 13 12 16 16 C 1.38877 * 119.92643 * 0.56675 * 15 14 13 17 17 O 1.35753 * 120.06707 * 179.68338 * 16 15 14 18 18 C 1.34834 * 117.00005 * 174.48316 * 17 16 15 19 19 H 1.07996 * 119.99655 * 5.06280 * 18 17 16 20 20 C 1.38652 * 119.99925 * 185.05475 * 18 17 16 21 21 N 1.31558 * 120.00365 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00050 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46957 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47180 * 120.00353 * 22 20 18 25 25 H 1.48495 * 109.47185 * 240.00462 * 22 20 18 26 26 C 1.38877 * 119.86760 * 359.70439 * 16 15 14 27 27 C 1.38103 * 119.92579 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46811 * 269.96873 * 1 2 3 29 29 H 1.08999 * 109.46665 * 29.97093 * 1 2 3 30 30 H 1.08997 * 109.46803 * 149.97134 * 1 2 3 31 31 H 1.08006 * 126.77897 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47488 * 210.02321 * 7 6 5 33 33 H 1.09003 * 109.47299 * 330.02637 * 7 6 5 34 34 H 0.97003 * 119.99991 * 0.02562 * 8 7 6 35 35 H 0.96990 * 120.00144 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.46876 * 299.99883 * 12 11 9 37 37 H 1.08994 * 109.47033 * 59.99823 * 12 11 9 38 38 H 1.08003 * 119.96777 * 359.97438 * 14 13 12 39 39 H 1.07995 * 120.03621 * 180.27435 * 15 14 13 40 40 H 0.96997 * 120.00363 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.03923 * 179.97438 * 26 16 15 42 42 H 1.07998 * 119.96661 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5878 0.5746 -0.0006 5 7 3.5879 -0.6346 -0.0014 6 6 2.3776 -1.1140 -0.0010 7 6 1.9827 -2.5683 -0.0073 8 7 1.8574 -3.0463 1.3719 9 6 1.5101 -4.3261 1.6127 10 8 1.3013 -5.0841 0.6852 11 7 1.3944 -4.7656 2.8815 12 6 1.0175 -6.1570 3.1432 13 6 0.9578 -6.3899 4.6309 14 6 2.0857 -6.8159 5.3084 15 6 2.0358 -7.0249 6.6726 16 6 0.8482 -6.8181 7.3622 17 8 0.7943 -7.0288 8.7022 18 6 -0.3542 -6.7005 9.3277 19 1 -1.2058 -6.3674 8.7532 20 6 -0.4418 -6.7909 10.7085 21 7 0.5957 -7.1964 11.4084 22 14 -2.0332 -6.3368 11.5751 23 1 -3.0415 -5.9152 10.5696 24 1 -2.5428 -7.5140 12.3231 25 1 -1.7804 -5.2206 12.5214 26 6 -0.2842 -6.3956 6.6782 27 6 -0.2263 -6.1830 5.3148 28 1 -0.3633 -0.0006 1.0276 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 2.0577 2.1094 0.0004 32 1 1.0276 -2.6833 -0.5198 33 1 2.7454 -3.1497 -0.5254 34 1 2.0237 -2.4414 2.1118 35 1 1.5607 -4.1609 3.6213 36 1 0.0396 -6.3570 2.7049 37 1 1.7574 -6.8233 2.7001 38 1 3.0076 -6.9816 4.7706 39 1 2.9181 -7.3534 7.2018 40 1 0.5343 -7.2600 12.3743 41 1 -1.2093 -6.2343 7.2116 42 1 -1.1066 -5.8549 4.7822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366737981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:37 Heat of formation + Delta-G solvation = 28.381613 kcal Electronic energy + Delta-G solvation = -26170.894646 eV Core-core repulsion = 22120.294588 eV Total energy + Delta-G solvation = -4050.600058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.43081 -40.04663 -39.10198 -37.01790 -36.26468 -34.39214 -34.21770 -32.58345 -32.35080 -30.30767 -29.99228 -28.64064 -27.50195 -25.75518 -24.50848 -22.14316 -22.06677 -21.76744 -21.02564 -20.63844 -18.79946 -18.09346 -18.05948 -17.72525 -17.05297 -16.40363 -15.84541 -15.22231 -14.80745 -14.72966 -14.56027 -14.48259 -14.03187 -13.87027 -13.75283 -13.71436 -13.50025 -13.24003 -13.16358 -12.80285 -12.67268 -12.60598 -12.09673 -11.70443 -11.56303 -11.41463 -10.99933 -10.79417 -10.73240 -10.69457 -10.49408 -10.17531 -9.83493 -9.45006 -9.41463 -8.93473 -8.82169 -8.29831 -7.34793 -6.54696 -4.13597 1.01411 1.53613 2.04398 2.11790 2.78417 2.91016 3.07312 3.08085 3.13685 3.17568 3.62473 3.88663 4.01280 4.23363 4.40791 4.55127 4.63490 4.92607 5.00276 5.10176 5.14426 5.19167 5.23651 5.26491 5.34494 5.38624 5.43529 5.65654 5.70356 5.80790 5.90866 6.10877 6.17046 6.34111 6.53948 6.59500 6.78224 6.82304 6.96620 7.14252 7.26301 7.33768 7.70069 7.78114 7.90106 7.96615 8.54917 8.90710 9.58993 10.62884 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.001940 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.956001 B =14427.837079 C =15186.073665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.187 4.187 3 C -0.065 4.065 4 O 0.109 5.891 5 N -0.344 5.344 6 C -0.004 4.004 7 C 0.223 3.777 8 N -0.746 5.746 9 C 0.705 3.295 10 O -0.595 6.595 11 N -0.736 5.736 12 C 0.198 3.802 13 C -0.215 4.215 14 C -0.053 4.053 15 C -0.196 4.196 16 C 0.161 3.839 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.397 0.603 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 15.883 -20.244 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.191 4.191 3 C -0.146 4.146 4 O 0.039 5.961 5 N -0.045 5.045 6 C -0.163 4.163 7 C 0.098 3.902 8 N -0.403 5.403 9 C 0.405 3.595 10 O -0.474 6.474 11 N -0.390 5.390 12 C 0.075 3.925 13 C -0.216 4.216 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.257 4.257 27 C -0.069 4.069 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.017 14.423 -20.696 25.247 hybrid contribution -1.471 1.111 1.212 2.206 sum -0.454 15.534 -19.484 24.923 Atomic orbital electron populations 1.20152 0.87013 1.03455 1.03127 1.21387 0.98909 0.91376 1.07435 1.25835 0.82955 1.01304 1.04503 1.84859 1.29251 1.15398 1.66577 1.73933 1.22233 0.91384 1.16979 1.23496 0.88827 0.98285 1.05686 1.19179 1.02389 0.84958 0.83662 1.45015 1.76301 1.11085 1.07939 1.15922 0.78167 0.81532 0.83926 1.90922 1.58018 1.55270 1.43140 1.45504 1.74259 1.13846 1.05432 1.19850 1.00186 0.80163 0.92275 1.19217 0.95180 1.13260 0.93959 1.20549 0.96850 0.96745 0.93077 1.20223 0.96778 1.10654 0.93841 1.19444 0.93125 0.91553 0.85286 1.83982 1.38031 1.71119 1.14476 1.21404 0.89304 1.46202 0.89992 0.88861 1.25327 0.99222 0.96557 0.95419 1.70044 1.29431 1.42555 1.07297 0.85625 0.79819 0.78488 0.79376 1.19043 1.20057 1.20069 1.21161 0.99575 1.10392 0.94554 1.20645 0.96257 0.96410 0.93547 0.90486 0.90807 0.90678 0.76548 0.89294 0.89843 0.76902 0.76830 0.91670 0.91648 0.86928 0.86375 0.91916 0.85418 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.37 36.01 0.37 0.00 16 2 C -0.19 -1.23 6.32 -104.42 -0.66 -1.89 16 3 C -0.06 -0.34 12.26 29.73 0.36 0.02 16 4 O 0.11 0.90 11.20 17.16 0.19 1.10 16 5 N -0.34 -3.54 12.07 33.42 0.40 -3.14 16 6 C 0.00 -0.03 6.70 -82.10 -0.55 -0.58 16 7 C 0.22 2.15 6.18 -5.19 -0.03 2.12 16 8 N -0.75 -7.67 5.55 -66.41 -0.37 -8.04 16 9 C 0.70 9.45 8.57 -86.92 -0.74 8.70 16 10 O -0.59 -10.15 16.34 5.28 0.09 -10.06 16 11 N -0.74 -9.23 5.55 -66.41 -0.37 -9.60 16 12 C 0.20 2.77 5.80 -5.19 -0.03 2.74 16 13 C -0.21 -3.40 5.25 -104.58 -0.55 -3.95 16 14 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 15 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 16 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.17 -4.79 9.76 0.03 0.00 -4.79 16 18 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 22 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 26 C -0.24 -4.87 9.17 -39.39 -0.36 -5.23 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.37 7.65 -51.93 -0.40 -0.03 16 31 H 0.22 0.21 8.06 -52.48 -0.42 -0.21 16 32 H 0.09 0.80 7.65 -51.93 -0.40 0.40 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 3.43 8.48 -40.82 -0.35 3.08 16 35 H 0.40 4.42 8.48 -40.82 -0.35 4.07 16 36 H 0.06 0.92 8.08 -51.92 -0.42 0.51 16 37 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -33.22 370.87 -7.13 -40.35 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.99 Total: 8.34 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.41 Total: -10.82 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.42 Total: -44.59 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.28 Total: -13.76 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.22 -7.13 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366737981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.735 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds