Wall clock time and date at job start Tue Mar 31 2020 16:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35442 * 128.00734 * 2 1 4 4 O 1.34047 * 106.44805 * 180.02562 * 3 2 1 5 5 N 1.20925 * 111.56467 * 0.02562 * 4 3 2 6 6 C 1.30173 * 111.60240 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.80021 * 179.73656 * 6 5 4 8 8 N 1.46503 * 109.47028 * 90.02176 * 7 6 5 9 9 C 1.34779 * 120.00214 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99667 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00038 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99804 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46934 * 180.02562 * 12 11 9 14 14 C 1.38300 * 119.92745 * 269.72282 * 13 12 11 15 15 C 1.38102 * 120.06892 * 179.72884 * 14 13 12 16 16 C 1.38877 * 119.92643 * 0.56675 * 15 14 13 17 17 O 1.35753 * 120.06707 * 179.68338 * 16 15 14 18 18 C 1.34834 * 117.00005 * 174.48316 * 17 16 15 19 19 H 1.07996 * 119.99655 * 5.06280 * 18 17 16 20 20 C 1.38652 * 119.99925 * 185.05475 * 18 17 16 21 21 N 1.31558 * 120.00365 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00050 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46957 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47180 * 120.00353 * 22 20 18 25 25 H 1.48495 * 109.47185 * 240.00462 * 22 20 18 26 26 C 1.38877 * 119.86760 * 359.70439 * 16 15 14 27 27 C 1.38103 * 119.92579 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46811 * 269.96873 * 1 2 3 29 29 H 1.08999 * 109.46665 * 29.97093 * 1 2 3 30 30 H 1.08997 * 109.46803 * 149.97134 * 1 2 3 31 31 H 1.08006 * 126.77897 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47488 * 210.02321 * 7 6 5 33 33 H 1.09003 * 109.47299 * 330.02637 * 7 6 5 34 34 H 0.97003 * 119.99991 * 0.02562 * 8 7 6 35 35 H 0.96990 * 120.00144 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.46876 * 299.99883 * 12 11 9 37 37 H 1.08994 * 109.47033 * 59.99823 * 12 11 9 38 38 H 1.08003 * 119.96777 * 359.97438 * 14 13 12 39 39 H 1.07995 * 120.03621 * 180.27435 * 15 14 13 40 40 H 0.96997 * 120.00363 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.03923 * 179.97438 * 26 16 15 42 42 H 1.07998 * 119.96661 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5878 0.5746 -0.0006 5 7 3.5879 -0.6346 -0.0014 6 6 2.3776 -1.1140 -0.0010 7 6 1.9827 -2.5683 -0.0073 8 7 1.8574 -3.0463 1.3719 9 6 1.5101 -4.3261 1.6127 10 8 1.3013 -5.0841 0.6852 11 7 1.3944 -4.7656 2.8815 12 6 1.0175 -6.1570 3.1432 13 6 0.9578 -6.3899 4.6309 14 6 2.0857 -6.8159 5.3084 15 6 2.0358 -7.0249 6.6726 16 6 0.8482 -6.8181 7.3622 17 8 0.7943 -7.0288 8.7022 18 6 -0.3542 -6.7005 9.3277 19 1 -1.2058 -6.3674 8.7532 20 6 -0.4418 -6.7909 10.7085 21 7 0.5957 -7.1964 11.4084 22 14 -2.0332 -6.3368 11.5751 23 1 -3.0415 -5.9152 10.5696 24 1 -2.5428 -7.5140 12.3231 25 1 -1.7804 -5.2206 12.5214 26 6 -0.2842 -6.3956 6.6782 27 6 -0.2263 -6.1830 5.3148 28 1 -0.3633 -0.0006 1.0276 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 2.0577 2.1094 0.0004 32 1 1.0276 -2.6833 -0.5198 33 1 2.7454 -3.1497 -0.5254 34 1 2.0237 -2.4414 2.1118 35 1 1.5607 -4.1609 3.6213 36 1 0.0396 -6.3570 2.7049 37 1 1.7574 -6.8233 2.7001 38 1 3.0076 -6.9816 4.7706 39 1 2.9181 -7.3534 7.2018 40 1 0.5343 -7.2600 12.3743 41 1 -1.2093 -6.2343 7.2116 42 1 -1.1066 -5.8549 4.7822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366737981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:36 Heat of formation + Delta-G solvation = 4.847982 kcal Electronic energy + Delta-G solvation = -26171.915141 eV Core-core repulsion = 22120.294588 eV Total energy + Delta-G solvation = -4051.620553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.02717 -41.19061 -40.68869 -38.57825 -37.07658 -35.63034 -34.95929 -34.27157 -33.19416 -31.84438 -31.37946 -29.12025 -28.41851 -27.49870 -25.89635 -23.64682 -22.72739 -22.40972 -22.15805 -21.98276 -19.91974 -19.70554 -18.88365 -18.68555 -18.34333 -17.40746 -16.86064 -16.40657 -16.34208 -16.01970 -15.81399 -15.56002 -15.40693 -15.24294 -14.96684 -14.51155 -14.40075 -14.27081 -14.08917 -13.91713 -13.77841 -13.61717 -13.24013 -13.06361 -13.03556 -12.57344 -12.35641 -12.22610 -12.11973 -12.09041 -11.63125 -11.20017 -11.10376 -10.81679 -10.45878 -10.29589 -9.85201 -9.79122 -9.02371 -8.48603 -6.16868 0.43955 0.56043 0.57791 0.99406 1.36047 1.43328 1.54060 1.91654 2.10916 2.16905 2.38236 2.80187 3.00987 3.13099 3.41668 3.47455 3.48203 3.87730 3.95706 4.03827 4.14655 4.17649 4.37285 4.47221 4.53416 4.56985 4.69932 4.75002 4.81160 4.83242 4.88705 4.98734 5.04239 5.14579 5.26556 5.27999 5.34376 5.45397 5.52207 5.68893 5.75551 5.91035 6.01399 6.16140 6.96280 6.99802 7.24019 7.50785 7.75676 8.74454 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.001940 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.956001 B =14427.837079 C =15186.073665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.197 4.197 3 C -0.047 4.047 4 O 0.101 5.899 5 N -0.380 5.380 6 C -0.016 4.016 7 C 0.226 3.774 8 N -0.731 5.731 9 C 0.706 3.294 10 O -0.631 6.631 11 N -0.729 5.729 12 C 0.204 3.796 13 C -0.181 4.181 14 C -0.044 4.044 15 C -0.206 4.206 16 C 0.123 3.877 17 O -0.230 6.230 18 C -0.412 4.412 19 H 0.105 0.895 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.019 2.981 23 H -0.250 1.250 24 H -0.270 1.270 25 H -0.269 1.269 26 C -0.243 4.243 27 C -0.043 4.043 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.262 0.738 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.407 0.593 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 18.144 -22.663 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.201 4.201 3 C -0.128 4.128 4 O 0.032 5.968 5 N -0.082 5.082 6 C -0.174 4.174 7 C 0.101 3.899 8 N -0.389 5.389 9 C 0.406 3.594 10 O -0.512 6.512 11 N -0.384 5.384 12 C 0.081 3.919 13 C -0.183 4.183 14 C -0.062 4.062 15 C -0.225 4.225 16 C 0.072 3.928 17 O -0.136 6.136 18 C -0.488 4.488 19 H 0.122 0.878 20 C -0.221 4.221 21 N -0.557 5.557 22 Si 0.838 3.162 23 H -0.173 1.173 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.263 4.263 27 C -0.061 4.061 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.277 0.723 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.400 16.728 -23.166 28.577 hybrid contribution -0.912 0.501 1.546 1.863 sum -1.312 17.229 -21.620 27.676 Atomic orbital electron populations 1.20206 0.85579 1.04249 1.03485 1.21656 0.99869 0.90784 1.07824 1.26653 0.81395 1.02858 1.01890 1.84816 1.30777 1.14737 1.66457 1.73934 1.23206 0.92420 1.18689 1.23509 0.89304 0.98295 1.06262 1.19128 1.02212 0.85523 0.83019 1.44877 1.75086 1.10204 1.08713 1.15954 0.77950 0.82012 0.83490 1.90906 1.59678 1.56455 1.44202 1.45238 1.74131 1.13412 1.05615 1.19748 1.00926 0.81067 0.90204 1.19484 0.94176 1.09635 0.94978 1.20882 0.98543 0.95147 0.91646 1.20444 0.95931 1.10854 0.95273 1.19994 0.95137 0.93244 0.84452 1.83953 1.38771 1.74183 1.16661 1.21880 0.89807 1.46404 0.90731 0.87807 1.26602 1.03147 0.96369 0.95971 1.70187 1.32264 1.45670 1.07614 0.84522 0.75221 0.78288 0.78151 1.17285 1.19528 1.19386 1.21250 0.98548 1.10443 0.96017 1.20950 0.97919 0.95177 0.92100 0.90259 0.88688 0.91282 0.72264 0.88645 0.91439 0.75740 0.75734 0.91001 0.91207 0.83697 0.86798 0.91815 0.86100 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.37 71.24 0.74 0.24 16 2 C -0.20 -2.12 6.32 -19.73 -0.12 -2.24 16 3 C -0.05 -0.36 12.26 67.17 0.82 0.46 16 4 O 0.10 1.51 11.20 71.57 0.80 2.31 16 5 N -0.38 -7.47 12.07 -49.56 -0.60 -8.07 16 6 C -0.02 -0.26 6.70 43.58 0.29 0.03 16 7 C 0.23 4.13 6.18 85.63 0.53 4.66 16 8 N -0.73 -13.68 5.55 -482.28 -2.68 -16.36 16 9 C 0.71 17.29 8.57 179.05 1.53 18.82 16 10 O -0.63 -20.36 16.34 -4.01 -0.07 -20.43 16 11 N -0.73 -15.93 5.55 -482.28 -2.68 -18.60 16 12 C 0.20 4.95 5.80 85.63 0.50 5.44 16 13 C -0.18 -5.16 5.25 -19.84 -0.10 -5.27 16 14 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 15 C -0.21 -8.28 9.99 22.39 0.22 -8.05 16 16 C 0.12 5.82 6.65 22.58 0.15 5.97 16 17 O -0.23 -13.40 9.76 -22.82 -0.22 -13.62 16 18 C -0.41 -23.26 9.49 67.92 0.64 -22.62 16 19 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 21 N -0.92 -55.43 13.67 21.61 0.30 -55.14 16 22 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 23 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 C -0.24 -9.88 9.17 22.39 0.21 -9.68 16 27 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 31 H 0.26 -0.68 8.06 -2.91 -0.02 -0.70 16 32 H 0.10 1.61 7.65 -2.39 -0.02 1.60 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 6.14 8.48 -92.71 -0.79 5.35 16 35 H 0.41 7.63 8.48 -92.72 -0.79 6.84 16 36 H 0.07 1.74 8.08 -2.38 -0.02 1.72 16 37 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 42 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -77.31 370.87 2.71 -74.60 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.48 Total: 26.92 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 6.31 Total: -15.32 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -5.66 Total: -98.17 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: 0.51 Total: -31.74 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -77.31 2.71 -74.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366737981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.453 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds