Wall clock time and date at job start Tue Mar 31 2020 16:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47535 * 2 1 4 4 N 1.29950 * 126.28632 * 90.02212 * 3 2 1 5 5 O 1.21301 * 110.25121 * 179.97438 * 4 3 2 6 6 C 1.33641 * 109.81307 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.55694 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47143 * 269.97883 * 7 6 5 9 9 C 1.42901 * 113.99809 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47052 * 179.97438 * 9 8 7 11 11 O 1.21288 * 119.99900 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99959 * 180.02562 * 10 9 8 13 13 C 1.39940 * 120.00024 * 174.89187 * 12 10 9 14 14 C 1.39291 * 119.94797 * 145.78078 * 13 12 10 15 15 C 1.38491 * 120.42487 * 179.97438 * 14 13 12 16 16 C 1.37686 * 120.32592 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.88275 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.20962 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99974 * 205.17507 * 18 17 16 20 20 C 1.39932 * 120.00337 * 25.16413 * 18 17 16 21 21 N 1.30833 * 119.99437 * 16.81124 * 20 18 17 22 22 Si 1.86802 * 120.00294 * 196.80744 * 20 18 17 23 23 H 1.48496 * 109.46974 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46806 * 120.00413 * 22 20 18 25 25 H 1.48498 * 109.46850 * 240.00023 * 22 20 18 26 26 C 1.38243 * 119.94485 * 325.50303 * 13 12 10 27 27 N 1.31140 * 106.89563 * 359.76694 * 6 5 4 28 28 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47033 * 300.00087 * 1 2 3 30 30 H 1.08996 * 109.47140 * 59.99754 * 1 2 3 31 31 H 1.08997 * 109.47033 * 239.99913 * 2 1 3 32 32 H 1.09005 * 109.47046 * 119.99984 * 2 1 3 33 33 H 1.09007 * 109.46867 * 29.97432 * 7 6 5 34 34 H 1.08995 * 109.47533 * 149.96937 * 7 6 5 35 35 H 1.08997 * 109.47175 * 299.99356 * 9 8 7 36 36 H 1.09002 * 109.47351 * 60.00073 * 9 8 7 37 37 H 0.97007 * 120.00432 * 354.88865 * 12 10 9 38 38 H 1.07999 * 119.78982 * 359.97438 * 14 13 12 39 39 H 1.08008 * 119.83537 * 180.02562 * 15 14 13 40 40 H 1.07992 * 120.05486 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99808 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.15940 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6782 3.2447 0.7124 6 6 2.7069 3.3279 -0.6211 7 6 3.1290 4.5226 -1.4370 8 8 1.9922 5.3491 -1.6946 9 6 2.2849 6.5163 -2.4653 10 6 1.0208 7.3093 -2.6760 11 8 -0.0277 6.9135 -2.2122 12 7 1.0552 8.4576 -3.3806 13 6 -0.1333 9.1383 -3.6676 14 6 -0.1427 10.5302 -3.7177 15 6 -1.3133 11.2139 -4.0014 16 6 -2.4813 10.5243 -4.2377 17 6 -2.4870 9.1177 -4.1905 18 6 -3.6827 8.4025 -4.4316 19 1 -3.8128 7.4131 -4.0186 20 6 -4.6977 8.9767 -5.2051 21 7 -4.4349 10.0055 -5.9694 22 14 -6.4276 8.2744 -5.1464 23 1 -6.4622 7.1213 -4.2114 24 1 -7.3709 9.3206 -4.6766 25 1 -6.8250 7.8233 -6.5043 26 6 -1.2949 8.4279 -3.9067 27 7 2.3019 2.1697 -1.0841 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8759 5.0936 -0.8854 34 1 3.5546 4.1852 -2.3819 35 1 3.0140 7.1286 -1.9347 36 1 2.6932 6.2206 -3.4317 37 1 1.9038 8.8123 -3.6888 38 1 0.7686 11.0799 -3.5341 39 1 -1.3096 12.2933 -4.0382 40 1 -3.3914 11.0618 -4.4590 41 1 -5.1383 10.4034 -6.5059 42 1 -1.2877 7.3484 -3.8721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411389045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:34 Heat of formation + Delta-G solvation = 12.995593 kcal Electronic energy + Delta-G solvation = -26519.876612 eV Core-core repulsion = 22468.609366 eV Total energy + Delta-G solvation = -4051.267246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.86118 -39.87931 -38.26183 -36.99326 -36.62162 -34.48305 -34.13020 -33.06782 -31.96738 -29.83021 -29.69374 -28.09893 -26.48753 -25.38013 -25.28574 -23.47468 -21.75230 -21.44853 -20.87915 -19.72693 -18.48359 -17.96792 -17.80136 -17.09648 -16.66526 -16.54859 -15.69563 -15.44738 -15.09050 -14.92878 -14.63750 -14.42881 -14.38171 -13.71636 -13.36535 -13.18771 -12.97434 -12.81842 -12.41298 -12.38909 -12.09000 -12.03418 -11.69012 -11.65773 -11.57781 -11.25604 -11.20089 -11.11326 -10.92082 -10.45017 -10.29313 -10.21365 -10.14823 -9.67522 -9.43002 -9.08094 -8.99002 -7.45841 -6.94698 -6.71734 -4.33550 0.73714 1.85311 2.33895 2.52912 2.82070 3.00028 3.10920 3.17681 3.19157 3.29387 3.36102 3.70363 3.97522 4.06766 4.45910 4.57675 4.64102 4.74988 4.80564 4.83168 4.86808 4.95379 5.02005 5.05513 5.43671 5.47652 5.58854 5.71304 5.71455 5.87360 6.22436 6.37294 6.46507 6.70977 7.00245 7.03050 7.06918 7.25333 7.54343 7.70624 7.87346 7.95203 8.09645 8.13556 8.24509 8.59815 8.70363 8.93972 8.98011 10.21643 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002444 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.731343 B =11454.139740 C =13474.212417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.032 4.032 3 C 0.171 3.829 4 N -0.379 5.379 5 O 0.089 5.911 6 C 0.186 3.814 7 C 0.156 3.844 8 O -0.353 6.353 9 C 0.049 3.951 10 C 0.502 3.498 11 O -0.493 6.493 12 N -0.665 5.665 13 C 0.151 3.849 14 C -0.261 4.261 15 C -0.092 4.092 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.210 4.210 27 N -0.459 5.459 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.279 0.721 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.517 -11.316 6.350 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.102 4.102 4 N -0.085 5.085 5 O 0.028 5.972 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.270 6.270 9 C -0.031 4.031 10 C 0.287 3.713 11 O -0.365 6.365 12 N -0.311 5.311 13 C 0.060 3.940 14 C -0.282 4.282 15 C -0.111 4.111 16 C -0.191 4.191 17 C 0.116 3.884 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.421 5.421 22 Si 0.732 3.268 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.232 4.232 27 N -0.194 5.194 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.263 -12.143 7.100 20.757 hybrid contribution -0.005 0.246 -0.390 0.461 sum 15.258 -11.897 6.709 20.479 Atomic orbital electron populations 1.21758 0.93008 1.02919 1.03146 1.19958 0.97087 0.85350 1.04646 1.25950 1.00376 1.00593 0.83309 1.74644 1.17044 0.92884 1.23896 1.85304 1.60165 1.27149 1.24561 1.28151 0.97018 0.96190 0.82167 1.20580 0.88755 0.85583 0.97347 1.88093 1.30417 1.34925 1.73595 1.22300 0.96685 0.87193 0.96943 1.20043 0.90154 0.81770 0.79345 1.90815 1.31555 1.67680 1.46489 1.43273 1.09508 1.23744 1.54601 1.17386 0.85034 0.90656 1.00913 1.20021 0.98127 0.91321 1.18739 1.20466 0.93138 0.97336 1.00192 1.21360 0.97268 0.94436 1.06015 1.17497 0.91412 0.91858 0.87597 1.19627 0.98695 1.02702 1.27600 0.90290 1.25908 1.00896 0.94207 0.93175 1.69836 1.34438 1.19486 1.18293 0.86265 0.81517 0.80077 0.78925 1.18326 1.19701 1.20002 1.20989 0.91743 0.98506 1.11933 1.71895 1.15946 1.02139 1.29444 0.90928 0.92213 0.91638 0.88479 0.89054 0.88868 0.87987 0.89587 0.89424 0.76714 0.89220 0.88990 0.86276 0.90986 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.03 -0.27 6.56 -27.89 -0.18 -0.45 16 3 C 0.17 2.06 7.47 -156.37 -1.17 0.89 16 4 N -0.38 -4.96 12.16 30.90 0.38 -4.59 16 5 O 0.09 1.10 11.31 18.11 0.20 1.31 16 6 C 0.19 2.15 8.14 -13.05 -0.11 2.04 16 7 C 0.16 1.28 6.56 36.00 0.24 1.52 16 8 O -0.35 -4.56 9.86 -55.14 -0.54 -5.10 16 9 C 0.05 0.51 6.42 36.01 0.23 0.74 16 10 C 0.50 8.56 7.63 -10.99 -0.08 8.48 16 11 O -0.49 -11.35 14.25 -14.36 -0.20 -11.55 16 12 N -0.67 -11.08 5.34 -9.91 -0.05 -11.13 16 13 C 0.15 3.36 6.25 -83.76 -0.52 2.84 16 14 C -0.26 -5.62 9.97 -39.10 -0.39 -6.01 16 15 C -0.09 -2.14 10.02 -39.69 -0.40 -2.53 16 16 C -0.17 -4.49 8.69 -38.84 -0.34 -4.83 16 17 C 0.12 3.30 5.57 -106.85 -0.59 2.71 16 18 C -0.46 -12.66 9.05 -37.74 -0.34 -13.00 16 19 H 0.08 2.18 7.90 -52.49 -0.41 1.76 16 20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.79 -20.73 10.94 55.55 0.61 -20.13 16 22 Si 0.91 19.28 29.59 -169.99 -5.03 14.25 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 C -0.21 -5.47 8.39 -38.68 -0.32 -5.79 16 27 N -0.46 -5.91 11.55 -9.87 -0.11 -6.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 4.70 8.82 -40.82 -0.36 4.34 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 40 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16 41 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 42 H 0.11 2.85 6.48 -52.48 -0.34 2.51 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -35.64 369.14 -8.12 -43.76 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.22 Total: 6.08 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -3.71 Total: -12.44 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.82 Total: -41.87 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.54 Total: -15.34 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.64 -8.12 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411389045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.757 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds