Wall clock time and date at job start Tue Mar 31 2020 16:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47535 * 2 1 4 4 N 1.29950 * 126.28632 * 90.02212 * 3 2 1 5 5 O 1.21301 * 110.25121 * 179.97438 * 4 3 2 6 6 C 1.33641 * 109.81307 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.55694 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47143 * 269.97883 * 7 6 5 9 9 C 1.42901 * 113.99809 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47052 * 179.97438 * 9 8 7 11 11 O 1.21288 * 119.99900 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99959 * 180.02562 * 10 9 8 13 13 C 1.39940 * 120.00024 * 174.89187 * 12 10 9 14 14 C 1.39291 * 119.94797 * 145.78078 * 13 12 10 15 15 C 1.38491 * 120.42487 * 179.97438 * 14 13 12 16 16 C 1.37686 * 120.32592 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.88275 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.20962 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99974 * 205.17507 * 18 17 16 20 20 C 1.39932 * 120.00337 * 25.16413 * 18 17 16 21 21 N 1.30833 * 119.99437 * 16.81124 * 20 18 17 22 22 Si 1.86802 * 120.00294 * 196.80744 * 20 18 17 23 23 H 1.48496 * 109.46974 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46806 * 120.00413 * 22 20 18 25 25 H 1.48498 * 109.46850 * 240.00023 * 22 20 18 26 26 C 1.38243 * 119.94485 * 325.50303 * 13 12 10 27 27 N 1.31140 * 106.89563 * 359.76694 * 6 5 4 28 28 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47033 * 300.00087 * 1 2 3 30 30 H 1.08996 * 109.47140 * 59.99754 * 1 2 3 31 31 H 1.08997 * 109.47033 * 239.99913 * 2 1 3 32 32 H 1.09005 * 109.47046 * 119.99984 * 2 1 3 33 33 H 1.09007 * 109.46867 * 29.97432 * 7 6 5 34 34 H 1.08995 * 109.47533 * 149.96937 * 7 6 5 35 35 H 1.08997 * 109.47175 * 299.99356 * 9 8 7 36 36 H 1.09002 * 109.47351 * 60.00073 * 9 8 7 37 37 H 0.97007 * 120.00432 * 354.88865 * 12 10 9 38 38 H 1.07999 * 119.78982 * 359.97438 * 14 13 12 39 39 H 1.08008 * 119.83537 * 180.02562 * 15 14 13 40 40 H 1.07992 * 120.05486 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99808 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.15940 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6782 3.2447 0.7124 6 6 2.7069 3.3279 -0.6211 7 6 3.1290 4.5226 -1.4370 8 8 1.9922 5.3491 -1.6946 9 6 2.2849 6.5163 -2.4653 10 6 1.0208 7.3093 -2.6760 11 8 -0.0277 6.9135 -2.2122 12 7 1.0552 8.4576 -3.3806 13 6 -0.1333 9.1383 -3.6676 14 6 -0.1427 10.5302 -3.7177 15 6 -1.3133 11.2139 -4.0014 16 6 -2.4813 10.5243 -4.2377 17 6 -2.4870 9.1177 -4.1905 18 6 -3.6827 8.4025 -4.4316 19 1 -3.8128 7.4131 -4.0186 20 6 -4.6977 8.9767 -5.2051 21 7 -4.4349 10.0055 -5.9694 22 14 -6.4276 8.2744 -5.1464 23 1 -6.4622 7.1213 -4.2114 24 1 -7.3709 9.3206 -4.6766 25 1 -6.8250 7.8233 -6.5043 26 6 -1.2949 8.4279 -3.9067 27 7 2.3019 2.1697 -1.0841 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8759 5.0936 -0.8854 34 1 3.5546 4.1852 -2.3819 35 1 3.0140 7.1286 -1.9347 36 1 2.6932 6.2206 -3.4317 37 1 1.9038 8.8123 -3.6888 38 1 0.7686 11.0799 -3.5341 39 1 -1.3096 12.2933 -4.0382 40 1 -3.3914 11.0618 -4.4590 41 1 -5.1383 10.4034 -6.5059 42 1 -1.2877 7.3484 -3.8721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411389045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:33 Heat of formation + Delta-G solvation = -13.261913 kcal Electronic energy + Delta-G solvation = -26521.015223 eV Core-core repulsion = 22468.609366 eV Total energy + Delta-G solvation = -4052.405857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.75482 -41.27193 -39.40757 -38.54607 -37.47807 -36.20218 -34.95431 -34.84547 -32.76092 -31.75733 -30.97005 -29.29360 -27.59205 -27.19901 -26.18185 -24.29809 -23.36111 -22.71741 -22.23928 -21.27456 -19.62548 -19.34011 -18.86533 -18.20440 -17.81696 -17.40016 -17.21402 -16.71698 -16.52364 -16.41926 -15.91244 -15.58746 -15.31869 -14.99392 -14.80158 -14.56170 -14.12194 -14.04285 -13.78752 -13.53688 -13.23650 -13.18274 -12.95506 -12.89969 -12.79792 -12.71814 -12.53409 -12.37624 -12.19169 -12.05118 -11.96541 -11.53277 -11.20094 -11.14548 -10.91201 -10.86202 -10.62797 -9.40126 -8.76522 -8.62002 -6.38509 -0.13273 0.84871 0.97415 0.99324 1.34298 1.45015 1.49633 1.55835 1.78167 1.99624 2.19907 2.50803 2.71870 2.90141 3.16820 3.64847 3.73947 3.82696 4.08382 4.12526 4.16961 4.23961 4.26528 4.37714 4.39295 4.47510 4.64462 4.68775 4.81075 4.86419 4.95730 5.04344 5.09368 5.11741 5.17714 5.22434 5.32224 5.70690 5.81679 5.89273 6.07862 6.10807 6.34099 6.65842 6.69130 6.92727 6.99274 7.00267 7.35534 8.31664 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002444 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.731343 B =11454.139740 C =13474.212417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C 0.163 3.837 4 N -0.402 5.402 5 O 0.078 5.922 6 C 0.185 3.815 7 C 0.154 3.846 8 O -0.401 6.401 9 C 0.062 3.938 10 C 0.493 3.507 11 O -0.565 6.565 12 N -0.651 5.651 13 C 0.159 3.841 14 C -0.246 4.246 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.087 3.913 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.039 3.961 21 N -0.820 5.820 22 Si 0.980 3.020 23 H -0.269 1.269 24 H -0.257 1.257 25 H -0.260 1.260 26 C -0.240 4.240 27 N -0.486 5.486 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.427 0.573 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.290 0.710 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.350 -10.730 6.156 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.109 4.109 4 N -0.111 5.111 5 O 0.020 5.980 6 C -0.036 4.036 7 C 0.077 3.923 8 O -0.320 6.320 9 C -0.017 4.017 10 C 0.281 3.719 11 O -0.442 6.442 12 N -0.299 5.299 13 C 0.066 3.934 14 C -0.267 4.267 15 C -0.110 4.110 16 C -0.219 4.219 17 C 0.084 3.916 18 C -0.534 4.534 19 H 0.076 0.924 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.800 3.200 23 H -0.193 1.193 24 H -0.182 1.182 25 H -0.184 1.184 26 C -0.262 4.262 27 N -0.222 5.222 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.267 0.733 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.186 -11.521 6.883 22.602 hybrid contribution -0.705 0.090 -0.297 0.771 sum 17.481 -11.431 6.585 21.900 Atomic orbital electron populations 1.21739 0.93181 1.04142 1.01425 1.20171 0.96792 0.83806 1.06306 1.26611 0.99626 1.01735 0.82964 1.74621 1.18313 0.93409 1.24723 1.85261 1.60438 1.27036 1.25228 1.28981 0.95676 0.96943 0.82006 1.21091 0.87845 0.84495 0.98868 1.88008 1.33404 1.36198 1.74365 1.22398 0.92955 0.86609 0.99707 1.21432 0.91764 0.81322 0.77381 1.90800 1.34938 1.69167 1.49264 1.43151 1.08873 1.23684 1.54224 1.17469 0.85938 0.91406 0.98600 1.20513 0.99302 0.91026 1.15830 1.20875 0.92534 0.99105 0.98531 1.21317 0.98269 0.93909 1.08364 1.17840 0.92133 0.92995 0.88628 1.19736 1.00841 1.02673 1.30129 0.92386 1.26663 1.04365 0.94526 0.92064 1.69855 1.35993 1.20302 1.18502 0.85210 0.76325 0.79192 0.79255 1.19300 1.18165 1.18409 1.20946 0.93388 0.97494 1.14346 1.71914 1.17031 1.03127 1.30101 0.88230 0.93560 0.93643 0.86911 0.87233 0.84382 0.85094 0.84252 0.85315 0.73340 0.84353 0.85723 0.87840 0.89960 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.89 71.98 0.71 -1.75 16 2 C -0.03 -0.52 6.56 29.85 0.20 -0.33 16 3 C 0.16 3.95 7.47 138.46 1.03 4.98 16 4 N -0.40 -10.62 12.16 -60.30 -0.73 -11.35 16 5 O 0.08 1.93 11.31 74.85 0.85 2.78 16 6 C 0.18 4.08 8.14 88.38 0.72 4.80 16 7 C 0.15 2.03 6.56 71.24 0.47 2.50 16 8 O -0.40 -9.46 9.86 -129.94 -1.28 -10.74 16 9 C 0.06 1.04 6.42 71.24 0.46 1.50 16 10 C 0.49 16.13 7.63 87.66 0.67 16.80 16 11 O -0.56 -26.94 14.25 15.98 0.23 -26.71 16 12 N -0.65 -20.09 5.34 -303.65 -1.62 -21.71 16 13 C 0.16 6.95 6.25 38.10 0.24 7.19 16 14 C -0.25 -9.91 9.97 22.58 0.23 -9.68 16 15 C -0.09 -4.13 10.02 22.20 0.22 -3.90 16 16 C -0.20 -10.76 8.69 22.75 0.20 -10.56 16 17 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 18 C -0.50 -30.01 9.05 23.46 0.21 -29.79 16 19 H 0.06 3.52 7.90 -2.91 -0.02 3.50 16 20 C 0.04 2.08 5.16 85.25 0.44 2.52 16 21 N -0.82 -44.21 10.94 21.82 0.24 -43.98 16 22 Si 0.98 41.00 29.59 68.60 2.03 43.03 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 C -0.24 -13.10 8.39 22.85 0.19 -12.91 16 27 N -0.49 -12.37 11.55 -303.18 -3.50 -15.88 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.14 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.43 8.11 8.82 -92.70 -0.82 7.29 16 38 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.10 5.81 6.16 -2.91 -0.02 5.80 16 41 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 42 H 0.08 4.64 6.48 -2.91 -0.02 4.62 16 Total: -1.00 -87.82 369.14 2.32 -85.50 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.25 Total: 22.75 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.86 Total: -23.69 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -5.62 Total: -92.92 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.21 Total: -34.68 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -87.82 2.32 -85.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411389045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.238 kcal (2) G-P(sol) polarization free energy of solvation -87.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds