Wall clock time and date at job start Tue Mar 31 2020 16:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30270 * 126.28457 * 2 1 4 4 N 1.28665 * 109.38255 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38308 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.28484 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47510 * 90.01863 * 6 5 4 8 8 C 1.35972 * 117.00368 * 179.97438 * 7 6 5 9 9 C 1.38724 * 119.98259 * 0.25729 * 8 7 6 10 10 C 1.38092 * 120.01688 * 180.25058 * 9 8 7 11 11 C 1.38852 * 119.97958 * 359.49313 * 10 9 8 12 12 N 1.40111 * 120.01054 * 180.27262 * 11 10 9 13 13 C 1.34781 * 119.99672 * 144.90982 * 12 11 10 14 14 O 1.21292 * 119.99910 * 4.62999 * 13 12 11 15 15 C 1.50697 * 120.00087 * 184.63325 * 13 12 11 16 16 H 1.09004 * 109.46692 * 300.00092 * 15 13 12 17 17 C 1.52998 * 109.47374 * 59.99709 * 15 13 12 18 18 C 1.50697 * 109.47528 * 179.97438 * 15 13 12 19 19 H 1.08001 * 119.99394 * 0.02562 * 18 15 13 20 20 C 1.37871 * 120.00326 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00166 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00235 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46994 * 90.00112 * 22 20 18 24 24 H 1.48493 * 109.47338 * 210.00372 * 22 20 18 25 25 H 1.48503 * 109.46932 * 330.00399 * 22 20 18 26 26 C 1.38838 * 119.97173 * 0.25298 * 11 10 9 27 27 C 1.38096 * 119.98822 * 0.02562 * 26 11 10 28 28 O 1.34363 * 126.28164 * 180.28911 * 2 1 3 29 29 H 1.09008 * 109.47098 * 89.97455 * 1 2 3 30 30 H 1.09005 * 109.47380 * 209.96914 * 1 2 3 31 31 H 1.08993 * 109.47209 * 329.97308 * 1 2 3 32 32 H 1.08998 * 109.47382 * 330.01272 * 6 5 4 33 33 H 1.09003 * 109.47240 * 210.01573 * 6 5 4 34 34 H 1.08005 * 119.99580 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.00994 * 179.76355 * 10 9 8 36 36 H 0.96996 * 120.00502 * 324.90985 * 12 11 10 37 37 H 1.09010 * 109.46902 * 300.00395 * 17 15 13 38 38 H 1.08997 * 109.47365 * 59.99785 * 17 15 13 39 39 H 1.08997 * 109.47586 * 180.02562 * 17 15 13 40 40 H 0.96995 * 120.00141 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.00698 * 180.02562 * 26 11 10 42 42 H 1.07993 * 119.99205 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0003 7 8 5.2131 -1.7295 1.3475 8 6 6.3329 -2.4800 1.5256 9 6 7.0378 -2.9454 0.4251 10 6 8.1722 -3.7120 0.6052 11 6 8.6132 -4.0080 1.8881 12 7 9.7673 -4.7810 2.0715 13 6 10.5916 -4.5260 3.1069 14 8 10.2923 -3.6841 3.9272 15 6 11.8850 -5.2868 3.2455 16 1 11.6720 -6.3521 3.3345 17 6 12.7554 -5.0422 2.0112 18 6 12.6158 -4.8155 4.4762 19 1 12.1863 -4.0425 5.0963 20 6 13.8320 -5.3716 4.8112 21 7 14.3548 -6.3132 4.0563 22 14 14.7382 -4.7869 6.3364 23 1 14.3229 -5.6059 7.5034 24 1 16.2016 -4.9288 6.1277 25 1 14.4105 -3.3609 6.5907 26 6 7.9102 -3.5375 2.9890 27 6 6.7727 -2.7758 2.8075 28 8 2.3021 -1.0831 -0.0055 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.6147 -0.9264 -0.5132 33 1 4.6244 -2.4054 -0.5139 34 1 6.6968 -2.7120 -0.5727 35 1 8.7187 -4.0775 -0.2516 36 1 9.9731 -5.4996 1.4534 37 1 12.2269 -5.3828 1.1207 38 1 12.9682 -3.9769 1.9220 39 1 13.6907 -5.5928 2.1112 40 1 15.2106 -6.7042 4.2918 41 1 8.2529 -3.7670 3.9871 42 1 6.2260 -2.4094 3.6638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411758458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:53 Heat of formation + Delta-G solvation = -2.017583 kcal Electronic energy + Delta-G solvation = -26419.788941 eV Core-core repulsion = 22367.870675 eV Total energy + Delta-G solvation = -4051.918266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.70806 -40.47672 -39.35495 -37.27544 -36.65039 -34.10069 -33.86011 -33.52760 -31.16709 -30.76154 -30.24361 -28.27162 -27.06360 -25.20608 -23.71530 -23.25082 -23.06887 -22.42953 -21.51974 -19.49919 -18.68068 -17.74388 -17.69574 -17.34435 -16.60723 -16.24574 -16.08018 -15.68340 -15.09092 -14.90042 -14.59071 -14.54474 -13.93026 -13.87649 -13.49131 -13.39460 -13.26364 -12.92092 -12.87932 -12.80109 -12.52743 -12.50027 -12.30164 -11.76790 -11.54707 -11.32457 -11.07789 -10.98700 -10.77116 -10.75262 -10.34108 -10.07278 -10.02685 -9.61488 -9.05492 -9.02037 -8.68317 -8.39744 -7.57614 -6.09101 -4.12800 0.51893 1.37152 1.42233 1.60858 1.86471 2.91103 3.31050 3.37099 3.42411 3.43059 3.45707 3.67539 3.84291 3.94438 4.21975 4.43067 4.43706 4.68312 4.71670 4.80160 4.81322 4.86731 4.98860 5.01636 5.24675 5.27002 5.30164 5.41876 5.65575 5.88223 5.99899 6.11509 6.23630 6.49373 6.57018 6.65491 6.74262 6.84140 7.01647 7.30382 7.38492 7.67387 7.80625 7.87743 8.02650 8.28395 8.95318 9.00620 9.53201 10.98499 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.001807 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.543664 B =15490.086005 C =15878.501409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.171 3.829 3 N -0.289 5.289 4 N -0.256 5.256 5 C 0.161 3.839 6 C 0.162 3.838 7 O -0.312 6.312 8 C 0.095 3.905 9 C -0.187 4.187 10 C -0.116 4.116 11 C 0.135 3.865 12 N -0.688 5.688 13 C 0.519 3.481 14 O -0.524 6.524 15 C 0.031 3.969 16 H 0.056 0.944 17 C -0.133 4.133 18 C -0.504 4.504 19 H 0.075 0.925 20 C 0.059 3.941 21 N -0.896 5.896 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.272 1.272 26 C -0.085 4.085 27 C -0.123 4.123 28 O -0.218 6.218 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.407 0.593 37 H 0.013 0.987 38 H 0.032 0.968 39 H 0.095 0.905 40 H 0.262 0.738 41 H 0.151 0.849 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.515 5.086 -13.082 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 N -0.137 5.137 4 N -0.105 5.105 5 C -0.050 4.050 6 C 0.085 3.915 7 O -0.226 6.226 8 C 0.051 3.949 9 C -0.206 4.206 10 C -0.137 4.137 11 C 0.040 3.960 12 N -0.334 5.334 13 C 0.310 3.690 14 O -0.398 6.398 15 C 0.010 3.990 16 H 0.074 0.926 17 C -0.191 4.191 18 C -0.542 4.542 19 H 0.093 0.907 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.105 4.105 27 C -0.142 4.142 28 O -0.097 6.097 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.243 0.757 37 H 0.032 0.968 38 H 0.052 0.948 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.168 0.832 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.214 6.861 -12.305 28.014 hybrid contribution 0.354 -1.311 0.160 1.367 sum -23.860 5.550 -12.145 27.343 Atomic orbital electron populations 1.20425 0.79796 1.06077 1.05471 1.28166 0.98001 0.79490 0.98227 1.74481 0.95858 1.25509 1.17887 1.74438 1.12411 1.08949 1.14704 1.27241 0.84745 0.91280 1.01733 1.20656 0.87810 0.97871 0.85169 1.86059 1.42237 1.68597 1.25704 1.18771 0.86916 0.94685 0.94536 1.20899 0.98460 1.03836 0.97430 1.20709 0.97422 0.99697 0.95852 1.17914 0.88481 0.96454 0.93180 1.44100 1.22122 1.35312 1.31859 1.22301 0.85619 0.82732 0.78329 1.90531 1.74872 1.33651 1.40785 1.18911 0.86835 0.96047 0.97208 0.92623 1.21762 1.02970 1.00542 0.93868 1.21115 1.03792 1.21625 1.07678 0.90666 1.24941 0.97199 0.94866 0.97142 1.69859 1.18877 1.26629 1.38113 0.86431 0.78455 0.79418 0.82809 1.20621 1.21258 1.19708 1.21279 0.92110 0.97008 1.00153 1.20328 0.97753 1.01652 0.94465 1.84790 1.17347 1.38340 1.69203 0.88032 0.88584 0.87227 0.86909 0.88500 0.85446 0.85322 0.75709 0.96837 0.94849 0.88635 0.92867 0.83182 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.17 1.47 8.48 -12.94 -0.11 1.36 16 3 N -0.29 -3.41 12.22 32.55 0.40 -3.02 16 4 N -0.26 -3.28 12.22 32.55 0.40 -2.88 16 5 C 0.16 1.72 8.11 -12.94 -0.10 1.61 16 6 C 0.16 1.39 5.36 36.00 0.19 1.59 16 7 O -0.31 -3.74 10.12 -19.65 -0.20 -3.94 16 8 C 0.10 1.21 6.69 -39.22 -0.26 0.95 16 9 C -0.19 -2.07 9.03 -39.46 -0.36 -2.43 16 10 C -0.12 -1.45 9.96 -39.41 -0.39 -1.84 16 11 C 0.14 2.12 6.30 -83.62 -0.53 1.59 16 12 N -0.69 -11.56 5.20 -9.83 -0.05 -11.61 16 13 C 0.52 11.27 6.99 -10.99 -0.08 11.19 16 14 O -0.52 -12.92 12.89 5.55 0.07 -12.84 16 15 C 0.03 0.74 2.64 -92.93 -0.24 0.49 16 16 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 17 C -0.13 -2.94 8.87 37.16 0.33 -2.61 16 18 C -0.50 -13.87 8.37 -34.44 -0.29 -14.16 16 19 H 0.08 2.19 6.75 -52.49 -0.35 1.83 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 21 N -0.90 -24.51 11.32 55.43 0.63 -23.88 16 22 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 C -0.09 -1.39 8.69 -39.41 -0.34 -1.74 16 27 C -0.12 -1.75 9.98 -39.46 -0.39 -2.14 16 28 O -0.22 -2.11 10.87 5.38 0.06 -2.05 16 29 H 0.10 0.12 8.14 -51.92 -0.42 -0.31 16 30 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.11 0.79 7.65 -51.93 -0.40 0.40 16 33 H 0.10 0.57 7.67 -51.93 -0.40 0.17 16 34 H 0.13 0.97 6.29 -52.48 -0.33 0.64 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.41 5.64 8.39 -40.82 -0.34 5.30 16 37 H 0.01 0.23 7.68 -51.92 -0.40 -0.17 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.33 6.07 -51.93 -0.32 2.02 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.15 2.76 6.22 -52.49 -0.33 2.44 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -34.15 362.85 -5.50 -39.65 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.96 Total: 3.08 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.29 Total: -4.41 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 1.37 Total: -41.39 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.15 -5.50 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411758458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.635 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds