Wall clock time and date at job start Tue Mar 31 2020 16:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30270 * 126.28457 * 2 1 4 4 N 1.28665 * 109.38255 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38308 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.28484 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47510 * 90.01863 * 6 5 4 8 8 C 1.35972 * 117.00368 * 179.97438 * 7 6 5 9 9 C 1.38724 * 119.98259 * 0.25729 * 8 7 6 10 10 C 1.38092 * 120.01688 * 180.25058 * 9 8 7 11 11 C 1.38852 * 119.97958 * 359.49313 * 10 9 8 12 12 N 1.40111 * 120.01054 * 180.27262 * 11 10 9 13 13 C 1.34781 * 119.99672 * 144.90982 * 12 11 10 14 14 O 1.21292 * 119.99910 * 4.62999 * 13 12 11 15 15 C 1.50697 * 120.00087 * 184.63325 * 13 12 11 16 16 H 1.09004 * 109.46692 * 300.00092 * 15 13 12 17 17 C 1.52998 * 109.47374 * 59.99709 * 15 13 12 18 18 C 1.50697 * 109.47528 * 179.97438 * 15 13 12 19 19 H 1.08001 * 119.99394 * 0.02562 * 18 15 13 20 20 C 1.37871 * 120.00326 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00166 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00235 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46994 * 90.00112 * 22 20 18 24 24 H 1.48493 * 109.47338 * 210.00372 * 22 20 18 25 25 H 1.48503 * 109.46932 * 330.00399 * 22 20 18 26 26 C 1.38838 * 119.97173 * 0.25298 * 11 10 9 27 27 C 1.38096 * 119.98822 * 0.02562 * 26 11 10 28 28 O 1.34363 * 126.28164 * 180.28911 * 2 1 3 29 29 H 1.09008 * 109.47098 * 89.97455 * 1 2 3 30 30 H 1.09005 * 109.47380 * 209.96914 * 1 2 3 31 31 H 1.08993 * 109.47209 * 329.97308 * 1 2 3 32 32 H 1.08998 * 109.47382 * 330.01272 * 6 5 4 33 33 H 1.09003 * 109.47240 * 210.01573 * 6 5 4 34 34 H 1.08005 * 119.99580 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.00994 * 179.76355 * 10 9 8 36 36 H 0.96996 * 120.00502 * 324.90985 * 12 11 10 37 37 H 1.09010 * 109.46902 * 300.00395 * 17 15 13 38 38 H 1.08997 * 109.47365 * 59.99785 * 17 15 13 39 39 H 1.08997 * 109.47586 * 180.02562 * 17 15 13 40 40 H 0.96995 * 120.00141 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.00698 * 180.02562 * 26 11 10 42 42 H 1.07993 * 119.99205 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0003 7 8 5.2131 -1.7295 1.3475 8 6 6.3329 -2.4800 1.5256 9 6 7.0378 -2.9454 0.4251 10 6 8.1722 -3.7120 0.6052 11 6 8.6132 -4.0080 1.8881 12 7 9.7673 -4.7810 2.0715 13 6 10.5916 -4.5260 3.1069 14 8 10.2923 -3.6841 3.9272 15 6 11.8850 -5.2868 3.2455 16 1 11.6720 -6.3521 3.3345 17 6 12.7554 -5.0422 2.0112 18 6 12.6158 -4.8155 4.4762 19 1 12.1863 -4.0425 5.0963 20 6 13.8320 -5.3716 4.8112 21 7 14.3548 -6.3132 4.0563 22 14 14.7382 -4.7869 6.3364 23 1 14.3229 -5.6059 7.5034 24 1 16.2016 -4.9288 6.1277 25 1 14.4105 -3.3609 6.5907 26 6 7.9102 -3.5375 2.9890 27 6 6.7727 -2.7758 2.8075 28 8 2.3021 -1.0831 -0.0055 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.6147 -0.9264 -0.5132 33 1 4.6244 -2.4054 -0.5139 34 1 6.6968 -2.7120 -0.5727 35 1 8.7187 -4.0775 -0.2516 36 1 9.9731 -5.4996 1.4534 37 1 12.2269 -5.3828 1.1207 38 1 12.9682 -3.9769 1.9220 39 1 13.6907 -5.5928 2.1112 40 1 15.2106 -6.7042 4.2918 41 1 8.2529 -3.7670 3.9871 42 1 6.2260 -2.4094 3.6638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411758458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:53 Heat of formation + Delta-G solvation = -29.049990 kcal Electronic energy + Delta-G solvation = -26420.961154 eV Core-core repulsion = 22367.870675 eV Total energy + Delta-G solvation = -4053.090479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.43201 -41.62351 -40.66015 -38.47904 -37.40055 -35.81022 -35.38526 -34.27274 -32.57292 -32.12734 -30.99885 -29.36812 -27.79940 -27.20029 -24.97517 -24.44224 -23.77820 -23.35674 -22.80146 -21.04477 -19.56628 -18.88205 -18.50847 -18.39973 -18.07843 -17.63386 -17.16369 -16.84712 -16.48374 -16.06587 -15.86745 -15.60571 -15.11479 -15.08046 -14.54744 -14.22951 -14.19383 -13.95491 -13.82245 -13.68783 -13.62386 -13.51835 -13.43945 -13.09280 -12.97120 -12.73863 -12.57545 -12.52725 -12.21214 -12.08604 -12.03468 -11.97442 -11.06575 -10.88501 -10.78972 -10.60420 -10.33982 -9.97332 -8.73246 -8.16218 -6.26139 -0.18044 0.31055 0.34305 0.94283 1.14881 1.40271 1.41612 1.52934 1.83346 2.14810 2.27674 2.48173 2.79158 2.80333 3.14033 3.27059 3.63950 3.77929 3.91113 3.94909 4.15619 4.21437 4.24165 4.33678 4.36580 4.46031 4.55382 4.62242 4.68102 4.74858 4.87245 4.93960 4.99630 5.02680 5.04405 5.23281 5.40606 5.49220 5.51220 5.73438 5.84556 5.94845 6.20008 6.28885 6.66100 6.83001 7.06734 7.36192 7.46560 8.89502 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.001807 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.543664 B =15490.086005 C =15878.501409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.185 3.815 3 N -0.332 5.332 4 N -0.292 5.292 5 C 0.157 3.843 6 C 0.156 3.844 7 O -0.329 6.329 8 C 0.106 3.894 9 C -0.173 4.173 10 C -0.099 4.099 11 C 0.102 3.898 12 N -0.668 5.668 13 C 0.521 3.479 14 O -0.565 6.565 15 C 0.026 3.974 16 H 0.048 0.952 17 C -0.120 4.120 18 C -0.530 4.530 19 H 0.049 0.951 20 C 0.022 3.978 21 N -0.908 5.908 22 Si 0.953 3.047 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.281 1.281 26 C -0.106 4.106 27 C -0.139 4.139 28 O -0.222 6.222 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.423 0.577 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.265 0.735 41 H 0.116 0.884 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.210 4.779 -15.841 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.025 4.025 3 N -0.179 5.179 4 N -0.141 5.141 5 C -0.055 4.055 6 C 0.080 3.920 7 O -0.243 6.243 8 C 0.061 3.939 9 C -0.192 4.192 10 C -0.119 4.119 11 C 0.008 3.992 12 N -0.315 5.315 13 C 0.312 3.688 14 O -0.442 6.442 15 C 0.005 3.995 16 H 0.066 0.934 17 C -0.178 4.178 18 C -0.568 4.568 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.548 5.548 22 Si 0.779 3.221 23 H -0.201 1.201 24 H -0.199 1.199 25 H -0.206 1.206 26 C -0.127 4.127 27 C -0.158 4.158 28 O -0.101 6.101 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.192 0.808 35 H 0.180 0.820 36 H 0.261 0.739 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -25.940 6.545 -15.113 30.727 hybrid contribution 0.651 -1.169 0.945 1.638 sum -25.289 5.376 -14.168 29.482 Atomic orbital electron populations 1.20819 0.76038 1.07535 1.07407 1.29240 0.99584 0.78516 0.95195 1.74410 0.96057 1.27088 1.20374 1.74348 1.13388 1.10332 1.15983 1.27583 0.85630 0.90997 1.01322 1.21100 0.87566 0.99618 0.83722 1.86025 1.41749 1.68247 1.28239 1.18774 0.86982 0.93855 0.94285 1.21362 0.97073 1.01843 0.98940 1.21042 0.97397 0.98424 0.95078 1.18114 0.88452 0.98065 0.94541 1.43627 1.21760 1.35576 1.30491 1.21800 0.85663 0.82151 0.79207 1.90521 1.75679 1.35432 1.42571 1.18832 0.88267 0.95619 0.96790 0.93434 1.21573 1.01960 0.99518 0.94791 1.21270 1.04748 1.21554 1.09274 0.93316 1.25542 0.97689 0.95033 0.99484 1.69930 1.19108 1.26848 1.38874 0.85630 0.77924 0.78417 0.80110 1.20057 1.19942 1.20580 1.21054 0.93613 0.98773 0.99216 1.20315 0.97518 1.02051 0.95903 1.84815 1.17244 1.38664 1.69399 0.85594 0.86593 0.86177 0.84995 0.84883 0.80810 0.81994 0.73896 0.92479 0.95910 0.90955 0.92556 0.86568 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 71.23 0.75 0.55 16 2 C 0.18 2.86 8.48 88.34 0.75 3.61 16 3 N -0.33 -7.65 12.22 -165.51 -2.02 -9.67 16 4 N -0.29 -7.31 12.22 -165.51 -2.02 -9.33 16 5 C 0.16 3.06 8.11 88.34 0.72 3.78 16 6 C 0.16 2.16 5.36 71.23 0.38 2.54 16 7 O -0.33 -7.14 10.12 -93.23 -0.94 -8.08 16 8 C 0.11 2.45 6.69 22.50 0.15 2.60 16 9 C -0.17 -3.10 9.03 22.35 0.20 -2.90 16 10 C -0.10 -2.11 9.96 22.38 0.22 -1.89 16 11 C 0.10 3.12 6.30 38.11 0.24 3.36 16 12 N -0.67 -22.05 5.20 -303.39 -1.58 -23.63 16 13 C 0.52 23.23 6.99 87.66 0.61 23.84 16 14 O -0.56 -29.32 12.89 -3.07 -0.04 -29.36 16 15 C 0.03 1.27 2.64 -12.29 -0.03 1.24 16 16 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 17 C -0.12 -5.26 8.87 71.98 0.64 -4.62 16 18 C -0.53 -30.21 8.37 25.60 0.21 -29.99 16 19 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 20 C 0.02 1.21 5.30 84.65 0.45 1.66 16 21 N -0.91 -50.01 11.32 21.45 0.24 -49.77 16 22 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 26 C -0.11 -3.60 8.69 22.38 0.19 -3.40 16 27 C -0.14 -3.99 9.98 22.35 0.22 -3.76 16 28 O -0.22 -3.86 10.87 -3.66 -0.04 -3.90 16 29 H 0.13 -0.13 8.14 -2.38 -0.02 -0.15 16 30 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.13 1.32 7.65 -2.39 -0.02 1.31 16 33 H 0.13 0.89 7.67 -2.39 -0.02 0.87 16 34 H 0.17 1.50 6.29 -2.91 -0.02 1.48 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.42 10.91 8.39 -92.71 -0.78 10.13 16 37 H 0.06 1.93 7.68 -2.38 -0.02 1.92 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 40 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.12 4.68 6.22 -2.91 -0.02 4.66 16 42 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -79.06 362.85 1.64 -77.42 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.30 Total: 13.00 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.71 Total: -3.37 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -5.38 Total: -92.41 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.02 Total: -41.35 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -79.06 1.64 -77.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411758458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.369 kcal (2) G-P(sol) polarization free energy of solvation -79.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds