Wall clock time and date at job start Tue Mar 31 2020 16:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34473 * 126.16440 * 2 1 4 4 C 1.30262 * 108.69811 * 180.02562 * 3 2 1 5 5 O 1.33967 * 108.76190 * 359.97438 * 4 3 2 6 6 C 1.34326 * 126.16468 * 180.02562 * 2 1 3 7 7 C 1.50708 * 126.44446 * 359.97438 * 6 2 1 8 8 N 1.46501 * 109.47133 * 90.00082 * 7 6 2 9 9 C 1.34774 * 120.00091 * 180.02562 * 8 7 6 10 10 O 1.21592 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00268 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00498 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47349 * 180.02562 * 12 11 9 14 14 C 1.38304 * 119.92687 * 269.72200 * 13 12 11 15 15 C 1.38103 * 120.06474 * 179.72832 * 14 13 12 16 16 C 1.38881 * 119.93132 * 0.56704 * 15 14 13 17 17 O 1.35751 * 120.07128 * 179.68455 * 16 15 14 18 18 C 1.34831 * 117.00385 * 174.49222 * 17 16 15 19 19 H 1.08001 * 119.99433 * 5.04793 * 18 17 16 20 20 C 1.38645 * 119.99856 * 185.05908 * 18 17 16 21 21 N 1.31553 * 120.00695 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47277 * 59.99711 * 22 20 18 24 24 H 1.48505 * 109.47275 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47390 * 299.99886 * 22 20 18 26 26 C 1.38877 * 119.86064 * 359.70948 * 16 15 14 27 27 C 1.38099 * 119.93509 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47213 * 90.02226 * 1 2 3 29 29 H 1.09006 * 109.46904 * 210.02457 * 1 2 3 30 30 H 1.09000 * 109.47026 * 330.02259 * 1 2 3 31 31 H 1.08004 * 125.61708 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47065 * 209.99928 * 7 6 2 33 33 H 1.08995 * 109.46961 * 329.99867 * 7 6 2 34 34 H 0.97004 * 119.99625 * 359.97438 * 8 7 6 35 35 H 0.97003 * 120.00401 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.46452 * 299.99940 * 12 11 9 37 37 H 1.09000 * 109.46812 * 59.99484 * 12 11 9 38 38 H 1.07993 * 119.96681 * 359.97438 * 14 13 12 39 39 H 1.07998 * 120.03437 * 180.27589 * 15 14 13 40 40 H 0.96995 * 120.00592 * 179.97438 * 21 20 18 41 41 H 1.08005 * 120.03296 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96682 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5734 -0.6447 -0.0003 6 6 2.2997 -1.0845 -0.0005 7 6 1.8492 -2.5226 -0.0006 8 7 1.7028 -2.9884 -1.3818 9 6 1.3062 -4.2527 -1.6282 10 8 1.0694 -5.0066 -0.7041 11 7 1.1709 -4.6810 -2.8988 12 6 0.7393 -6.0551 -3.1667 13 6 0.6690 -6.2785 -4.6554 14 6 -0.5084 -6.0270 -5.3360 15 6 -0.5744 -6.2253 -6.7011 16 6 0.5397 -6.6890 -7.3886 17 8 0.4761 -6.8910 -8.7295 18 6 1.6224 -7.2318 -9.3523 19 1 2.5173 -7.4121 -8.7753 20 6 1.6521 -7.3504 -10.7333 21 7 0.5619 -7.1309 -11.4361 22 14 3.2404 -7.8217 -11.5962 23 1 3.6911 -9.1513 -11.1121 24 1 3.0087 -7.8816 -13.0618 25 1 4.2842 -6.8076 -11.3007 26 6 1.7188 -6.9460 -6.7013 27 6 1.7804 -6.7395 -5.3372 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.4066 1.3434 -0.0011 32 1 2.5901 -3.1355 0.5129 33 1 0.8916 -2.6034 0.5136 34 1 1.8906 -2.3866 -2.1191 35 1 1.3587 -4.0793 -3.6362 36 1 1.4535 -6.7522 -2.7284 37 1 -0.2447 -6.2190 -2.7274 38 1 -1.3759 -5.6714 -4.8000 39 1 -1.4928 -6.0245 -7.2327 40 1 0.5829 -7.2135 -12.4023 41 1 2.5867 -7.3071 -7.2331 42 1 2.6972 -6.9388 -4.8024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413725846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:17 Heat of formation + Delta-G solvation = -8.034195 kcal Electronic energy + Delta-G solvation = -26187.427290 eV Core-core repulsion = 22135.248124 eV Total energy + Delta-G solvation = -4052.179166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.82158 -40.07183 -39.11082 -36.98662 -35.75428 -35.32846 -34.39308 -32.43698 -32.09208 -30.31669 -30.01503 -28.60024 -26.34598 -25.62374 -24.45742 -22.68519 -22.07795 -21.32199 -21.07237 -20.65310 -18.76792 -18.09351 -17.59962 -17.15736 -17.05071 -16.34640 -15.96119 -15.27639 -14.96602 -14.72024 -14.64352 -14.50549 -14.07004 -13.81815 -13.72608 -13.70597 -13.58024 -13.41724 -13.09447 -12.80805 -12.65949 -12.48738 -12.09669 -11.70532 -11.45581 -11.41212 -10.98960 -10.97644 -10.81967 -10.72227 -10.52378 -10.38310 -9.49787 -9.44859 -9.24383 -8.93088 -8.86429 -8.30945 -7.35808 -6.54994 -4.14069 0.84968 1.97352 2.10756 2.18058 2.25419 2.87687 3.07555 3.08717 3.11351 3.12940 3.68508 3.88528 4.17212 4.20961 4.37516 4.53580 4.72749 4.98818 4.99682 5.13809 5.16163 5.21180 5.27194 5.30987 5.41781 5.51359 5.62978 5.64407 5.79318 5.88103 5.88873 6.09174 6.09866 6.32897 6.50561 6.58067 6.75410 6.79364 6.94946 7.12734 7.23344 7.25180 7.32877 7.69020 7.89455 7.91904 8.49926 8.90133 9.58032 10.62353 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.001923 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.934567 B =14558.877739 C =15205.818835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 N -0.489 5.489 4 C 0.183 3.817 5 O -0.197 6.197 6 C -0.072 4.072 7 C 0.231 3.769 8 N -0.749 5.749 9 C 0.705 3.295 10 O -0.594 6.594 11 N -0.735 5.735 12 C 0.198 3.802 13 C -0.216 4.216 14 C -0.053 4.053 15 C -0.196 4.196 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.238 4.238 27 C -0.050 4.050 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.252 0.748 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.399 0.601 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.128 0.872 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 12.614 20.249 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 N -0.218 5.218 4 C -0.044 4.044 5 O -0.083 6.083 6 C -0.125 4.125 7 C 0.107 3.893 8 N -0.407 5.407 9 C 0.405 3.595 10 O -0.473 6.473 11 N -0.390 5.390 12 C 0.075 3.925 13 C -0.217 4.217 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.257 4.257 27 C -0.069 4.069 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.268 0.732 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.233 0.767 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.269 12.464 20.677 24.363 hybrid contribution 1.498 -0.133 -1.209 1.929 sum 4.767 12.331 19.469 23.533 Atomic orbital electron populations 1.20221 0.86092 1.03668 1.03442 1.21671 0.98206 0.87422 1.03307 1.70441 1.01422 1.31619 1.18332 1.28151 0.97656 0.79287 0.99281 1.84469 1.29922 1.24621 1.69295 1.23077 0.81095 0.97555 1.10802 1.19262 1.01924 0.84282 0.83878 1.45138 1.74913 1.12764 1.07881 1.15920 0.78251 0.81409 0.83948 1.90929 1.57944 1.54981 1.43442 1.45522 1.72680 1.15376 1.05398 1.19856 0.99715 0.80643 0.92260 1.19211 0.95515 1.13075 0.93908 1.20539 0.96420 0.97190 0.93043 1.20222 0.98274 1.09185 0.93846 1.19446 0.93219 0.91493 0.85268 1.83978 1.34845 1.74253 1.14436 1.21307 0.87629 1.48082 0.89986 0.88965 1.25317 0.99093 0.96649 0.95394 1.70019 1.27380 1.44596 1.07319 0.85764 0.79908 0.79333 0.78352 1.19408 1.20196 1.19440 1.21159 0.99432 1.10580 0.94524 1.20650 0.96647 0.95986 0.93568 0.90205 0.90320 0.90335 0.73213 0.89671 0.88143 0.76740 0.76784 0.91677 0.91585 0.86917 0.86376 0.91798 0.85436 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.22 36.01 0.37 -0.14 16 2 C 0.01 0.13 7.11 -82.81 -0.59 -0.46 16 3 N -0.49 -4.56 11.29 -11.18 -0.13 -4.69 16 4 C 0.18 1.24 13.23 52.10 0.69 1.92 16 5 O -0.20 -1.66 10.78 5.37 0.06 -1.60 16 6 C -0.07 -0.61 6.75 -35.68 -0.24 -0.85 16 7 C 0.23 1.95 6.01 -5.19 -0.03 1.92 16 8 N -0.75 -6.96 5.55 -66.41 -0.37 -7.33 16 9 C 0.70 8.85 8.57 -86.93 -0.74 8.11 16 10 O -0.59 -9.61 16.34 5.28 0.09 -9.53 16 11 N -0.74 -8.76 5.55 -66.42 -0.37 -9.13 16 12 C 0.20 2.67 5.80 -5.20 -0.03 2.64 16 13 C -0.22 -3.34 5.25 -104.58 -0.55 -3.89 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 15 C -0.20 -3.87 9.99 -39.39 -0.39 -4.26 16 16 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 17 O -0.17 -4.74 9.76 0.04 0.00 -4.74 16 18 C -0.39 -10.61 9.49 30.88 0.29 -10.32 16 19 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.48 13.67 55.48 0.76 -23.72 16 22 Si 0.94 19.86 29.55 -169.99 -5.02 14.83 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.24 -4.84 9.17 -39.40 -0.36 -5.20 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.43 7.17 -51.93 -0.37 0.06 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.25 0.44 8.06 -52.48 -0.42 0.02 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.79 7.17 -51.93 -0.37 0.41 16 34 H 0.40 3.08 8.48 -40.82 -0.35 2.73 16 35 H 0.40 4.19 8.48 -40.82 -0.35 3.85 16 36 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.13 2.62 5.64 -52.48 -0.30 2.32 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -33.62 370.19 -7.06 -40.68 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.94 Total: 8.26 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.71 Total: -8.61 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.11 Total: -44.87 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.14 Total: -15.87 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.62 -7.06 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413725846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.646 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds