Wall clock time and date at job start Tue Mar 31 2020 16:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34473 * 126.16440 * 2 1 4 4 C 1.30262 * 108.69811 * 180.02562 * 3 2 1 5 5 O 1.33967 * 108.76190 * 359.97438 * 4 3 2 6 6 C 1.34326 * 126.16468 * 180.02562 * 2 1 3 7 7 C 1.50708 * 126.44446 * 359.97438 * 6 2 1 8 8 N 1.46501 * 109.47133 * 90.00082 * 7 6 2 9 9 C 1.34774 * 120.00091 * 180.02562 * 8 7 6 10 10 O 1.21592 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00268 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00498 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47349 * 180.02562 * 12 11 9 14 14 C 1.38304 * 119.92687 * 269.72200 * 13 12 11 15 15 C 1.38103 * 120.06474 * 179.72832 * 14 13 12 16 16 C 1.38881 * 119.93132 * 0.56704 * 15 14 13 17 17 O 1.35751 * 120.07128 * 179.68455 * 16 15 14 18 18 C 1.34831 * 117.00385 * 174.49222 * 17 16 15 19 19 H 1.08001 * 119.99433 * 5.04793 * 18 17 16 20 20 C 1.38645 * 119.99856 * 185.05908 * 18 17 16 21 21 N 1.31553 * 120.00695 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47277 * 59.99711 * 22 20 18 24 24 H 1.48505 * 109.47275 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47390 * 299.99886 * 22 20 18 26 26 C 1.38877 * 119.86064 * 359.70948 * 16 15 14 27 27 C 1.38099 * 119.93509 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47213 * 90.02226 * 1 2 3 29 29 H 1.09006 * 109.46904 * 210.02457 * 1 2 3 30 30 H 1.09000 * 109.47026 * 330.02259 * 1 2 3 31 31 H 1.08004 * 125.61708 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47065 * 209.99928 * 7 6 2 33 33 H 1.08995 * 109.46961 * 329.99867 * 7 6 2 34 34 H 0.97004 * 119.99625 * 359.97438 * 8 7 6 35 35 H 0.97003 * 120.00401 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.46452 * 299.99940 * 12 11 9 37 37 H 1.09000 * 109.46812 * 59.99484 * 12 11 9 38 38 H 1.07993 * 119.96681 * 359.97438 * 14 13 12 39 39 H 1.07998 * 120.03437 * 180.27589 * 15 14 13 40 40 H 0.96995 * 120.00592 * 179.97438 * 21 20 18 41 41 H 1.08005 * 120.03296 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96682 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5734 -0.6447 -0.0003 6 6 2.2997 -1.0845 -0.0005 7 6 1.8492 -2.5226 -0.0006 8 7 1.7028 -2.9884 -1.3818 9 6 1.3062 -4.2527 -1.6282 10 8 1.0694 -5.0066 -0.7041 11 7 1.1709 -4.6810 -2.8988 12 6 0.7393 -6.0551 -3.1667 13 6 0.6690 -6.2785 -4.6554 14 6 -0.5084 -6.0270 -5.3360 15 6 -0.5744 -6.2253 -6.7011 16 6 0.5397 -6.6890 -7.3886 17 8 0.4761 -6.8910 -8.7295 18 6 1.6224 -7.2318 -9.3523 19 1 2.5173 -7.4121 -8.7753 20 6 1.6521 -7.3504 -10.7333 21 7 0.5619 -7.1309 -11.4361 22 14 3.2404 -7.8217 -11.5962 23 1 3.6911 -9.1513 -11.1121 24 1 3.0087 -7.8816 -13.0618 25 1 4.2842 -6.8076 -11.3007 26 6 1.7188 -6.9460 -6.7013 27 6 1.7804 -6.7395 -5.3372 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.4066 1.3434 -0.0011 32 1 2.5901 -3.1355 0.5129 33 1 0.8916 -2.6034 0.5136 34 1 1.8906 -2.3866 -2.1191 35 1 1.3587 -4.0793 -3.6362 36 1 1.4535 -6.7522 -2.7284 37 1 -0.2447 -6.2190 -2.7274 38 1 -1.3759 -5.6714 -4.8000 39 1 -1.4928 -6.0245 -7.2327 40 1 0.5829 -7.2135 -12.4023 41 1 2.5867 -7.3071 -7.2331 42 1 2.6972 -6.9388 -4.8024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413725846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:17 Heat of formation + Delta-G solvation = -34.404871 kcal Electronic energy + Delta-G solvation = -26188.570808 eV Core-core repulsion = 22135.248124 eV Total energy + Delta-G solvation = -4053.322684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.40425 -41.15174 -40.66303 -38.55197 -36.48475 -36.07641 -35.57186 -34.27884 -32.84068 -31.82575 -31.29226 -29.34087 -27.67881 -26.85429 -25.69315 -23.63464 -23.28505 -22.25838 -21.95405 -21.87811 -19.90331 -19.65840 -18.85189 -18.20460 -17.77719 -17.22265 -16.86735 -16.41035 -16.34310 -16.03413 -15.84829 -15.61206 -15.45525 -15.30412 -14.89600 -14.54155 -14.40582 -14.34652 -14.21174 -14.07598 -13.73740 -13.57333 -13.19747 -13.01436 -13.00530 -12.52846 -12.37544 -12.20915 -12.14335 -12.05895 -11.60750 -11.48381 -11.19800 -10.80044 -10.42876 -9.84543 -9.83064 -9.77167 -9.00989 -8.48017 -6.16321 0.24378 0.55927 0.59066 1.35772 1.44890 1.51517 1.54316 1.68577 2.00317 2.14659 2.17312 2.81307 3.13614 3.25811 3.43851 3.49507 3.59537 3.81235 3.90170 4.05136 4.13322 4.18839 4.39612 4.49422 4.58238 4.62677 4.73155 4.77854 4.79166 4.82685 4.95454 5.05748 5.11610 5.14914 5.27873 5.29712 5.37565 5.47896 5.53808 5.70025 5.76920 5.93563 6.01705 6.17725 6.66646 6.96679 7.02453 7.53771 7.76140 8.74499 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.001923 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.934567 B =14558.877739 C =15205.818835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 N -0.526 5.526 4 C 0.198 3.802 5 O -0.208 6.208 6 C -0.082 4.082 7 C 0.235 3.765 8 N -0.735 5.735 9 C 0.707 3.293 10 O -0.629 6.629 11 N -0.729 5.729 12 C 0.204 3.796 13 C -0.181 4.181 14 C -0.042 4.042 15 C -0.205 4.205 16 C 0.122 3.878 17 O -0.229 6.229 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.245 4.245 27 C -0.045 4.045 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.294 0.706 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.408 0.592 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 13.543 22.844 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 N -0.255 5.255 4 C -0.028 4.028 5 O -0.095 6.095 6 C -0.135 4.135 7 C 0.111 3.889 8 N -0.392 5.392 9 C 0.407 3.593 10 O -0.511 6.511 11 N -0.385 5.385 12 C 0.081 3.919 13 C -0.182 4.182 14 C -0.060 4.060 15 C -0.225 4.225 16 C 0.071 3.929 17 O -0.135 6.135 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.264 4.264 27 C -0.064 4.064 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.309 0.691 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.244 0.756 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.731 13.438 23.328 27.334 hybrid contribution 1.006 -0.264 -1.580 1.892 sum 5.737 13.174 21.748 26.066 Atomic orbital electron populations 1.20288 0.85111 1.04233 1.03800 1.21991 0.99067 0.87450 1.02824 1.70469 1.02626 1.32265 1.20138 1.29162 0.98250 0.78988 0.96426 1.84475 1.29920 1.25469 1.69594 1.22960 0.81219 0.97320 1.11986 1.19256 1.02194 0.84304 0.83183 1.45010 1.73687 1.11792 1.08751 1.15931 0.78041 0.81909 0.83426 1.90915 1.59550 1.56185 1.44434 1.45250 1.72640 1.14879 1.05694 1.19745 1.00521 0.81640 0.90031 1.19501 0.94400 1.09298 0.95051 1.20897 0.97986 0.95591 0.91534 1.20463 0.97464 1.09199 0.95350 1.20012 0.95303 0.93182 0.84418 1.83948 1.35514 1.77420 1.16646 1.21784 0.88195 1.48256 0.90735 0.87928 1.26575 1.02933 0.96546 0.95935 1.70166 1.30105 1.47836 1.07535 0.84665 0.75249 0.79523 0.76919 1.18210 1.19769 1.18111 1.21246 0.98376 1.10774 0.96018 1.20951 0.98383 0.94902 0.92122 0.89861 0.89261 0.90297 0.69113 0.90181 0.87443 0.75631 0.75737 0.91295 0.90800 0.83343 0.86714 0.91805 0.86258 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.22 71.24 0.73 -0.17 16 2 C 0.01 0.11 7.11 41.26 0.29 0.40 16 3 N -0.53 -8.90 11.29 -304.06 -3.43 -12.34 16 4 C 0.20 2.19 13.23 130.48 1.73 3.92 16 5 O -0.21 -3.07 10.78 -3.71 -0.04 -3.11 16 6 C -0.08 -1.24 6.75 24.79 0.17 -1.07 16 7 C 0.23 3.51 6.01 85.64 0.51 4.02 16 8 N -0.74 -11.77 5.55 -482.29 -2.68 -14.45 16 9 C 0.71 15.68 8.57 179.06 1.53 17.21 16 10 O -0.63 -18.76 16.34 -4.01 -0.07 -18.83 16 11 N -0.73 -14.73 5.55 -482.30 -2.68 -17.41 16 12 C 0.20 4.68 5.80 85.63 0.50 5.18 16 13 C -0.18 -4.99 5.25 -19.84 -0.10 -5.10 16 14 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16 15 C -0.21 -8.09 9.99 22.39 0.22 -7.87 16 16 C 0.12 5.73 6.65 22.58 0.15 5.88 16 17 O -0.23 -13.32 9.76 -22.76 -0.22 -13.54 16 18 C -0.41 -23.34 9.49 67.92 0.64 -22.69 16 19 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 20 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 21 N -0.92 -55.25 13.67 21.61 0.30 -54.96 16 22 Si 1.02 41.70 29.55 68.60 2.03 43.73 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 C -0.24 -9.92 9.17 22.39 0.21 -9.72 16 27 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.81 7.17 -2.38 -0.02 0.80 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.29 0.03 8.06 -2.91 -0.02 0.01 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.47 7.17 -2.39 -0.02 1.45 16 34 H 0.41 5.18 8.48 -92.71 -0.79 4.39 16 35 H 0.41 7.03 8.48 -92.71 -0.79 6.24 16 36 H 0.07 1.62 8.08 -2.38 -0.02 1.60 16 37 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.12 4.96 5.64 -2.91 -0.02 4.95 16 42 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -77.47 370.19 0.20 -77.26 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -0.48 Total: 26.61 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 7.48 Total: -12.97 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -8.49 Total: -99.16 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.33 Total: -35.48 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -77.47 0.20 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413725846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.857 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds