Wall clock time and date at job start Tue Mar 31 2020 17:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47095 * 2 1 4 4 C 1.53004 * 109.46935 * 239.99830 * 2 1 3 5 5 N 1.46497 * 109.47253 * 60.00245 * 4 2 1 6 6 C 1.34776 * 120.00322 * 179.97438 * 5 4 2 7 7 O 1.21571 * 119.99384 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00323 * 179.97438 * 6 5 4 9 9 C 1.39242 * 120.00223 * 185.63721 * 8 6 5 10 10 C 1.39689 * 119.57758 * 174.99424 * 9 8 6 11 11 C 1.38646 * 119.49506 * 179.97438 * 10 9 8 12 12 C 1.38354 * 118.67148 * 359.73159 * 11 10 9 13 13 C 1.40570 * 119.13096 * 0.51307 * 12 11 10 14 14 C 1.41331 * 119.78607 * 179.75110 * 13 12 11 15 15 H 1.07997 * 120.00450 * 6.09739 * 14 13 12 16 16 C 1.40030 * 119.99880 * 186.09964 * 14 13 12 17 17 N 1.30747 * 119.99915 * 6.11852 * 16 14 13 18 18 Si 1.86805 * 120.00092 * 186.11652 * 16 14 13 19 19 H 1.48494 * 109.47239 * 265.00356 * 18 16 14 20 20 H 1.48496 * 109.47020 * 25.00388 * 18 16 14 21 21 H 1.48503 * 109.47034 * 145.00330 * 18 16 14 22 22 N 1.31909 * 119.57372 * 354.98014 * 9 8 6 23 23 C 1.50700 * 109.47212 * 119.99943 * 2 1 3 24 24 C 1.34511 * 125.78885 * 269.71992 * 23 2 1 25 25 C 1.41386 * 106.84214 * 179.88523 * 24 23 2 26 26 C 1.34518 * 106.83748 * 0.37597 * 25 24 23 27 27 O 1.34297 * 108.42126 * 359.76239 * 26 25 24 28 28 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47346 * 299.99856 * 1 2 3 30 30 H 1.09000 * 109.47147 * 60.00294 * 1 2 3 31 31 H 0.96695 * 114.00228 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47257 * 299.99717 * 4 2 1 33 33 H 1.09004 * 109.46383 * 179.97438 * 4 2 1 34 34 H 0.97008 * 119.99963 * 359.97438 * 5 4 2 35 35 H 0.97008 * 119.99731 * 5.64806 * 8 6 5 36 36 H 1.07997 * 120.24874 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.66285 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.43348 * 180.28117 * 12 11 10 39 39 H 0.97000 * 120.00031 * 180.02562 * 17 16 14 40 40 H 1.08001 * 126.57868 * 0.02562 * 24 23 2 41 41 H 1.08003 * 126.58129 * 180.15668 * 25 24 23 42 42 H 1.08000 * 125.78786 * 179.75415 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0307 -2.4454 6 6 1.8777 -0.4909 -3.6696 7 8 2.5766 -1.4794 -3.7810 8 7 1.4280 0.1441 -4.7700 9 6 1.6654 -0.3959 -6.0313 10 6 1.1066 0.2121 -7.1579 11 6 1.3445 -0.3267 -8.4131 12 6 2.1387 -1.4553 -8.5113 13 6 2.6680 -2.0237 -7.3396 14 6 3.4767 -3.1797 -7.4234 15 1 3.7677 -3.5664 -8.3889 16 6 3.9008 -3.8238 -6.2546 17 7 3.4527 -3.4291 -5.0914 18 14 5.1066 -5.2468 -6.3571 19 1 4.3586 -6.5295 -6.3696 20 1 5.9071 -5.1285 -7.6022 21 1 6.0127 -5.2135 -5.1811 22 7 2.4153 -1.4749 -6.1469 23 6 2.0324 -0.7104 1.2305 24 6 2.2996 -0.1354 2.4167 25 6 2.7407 -1.1641 3.2805 26 6 2.7246 -2.3049 2.5679 27 8 2.2946 -2.0241 1.3270 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9703 1.4237 -0.0004 32 1 1.6767 -1.7489 -1.2492 33 1 3.1300 -0.7209 -1.2494 34 1 0.9937 0.7578 -2.3565 35 1 0.9392 0.9775 -4.6833 36 1 0.4939 1.0952 -7.0520 37 1 0.9215 0.1278 -9.2968 38 1 2.3463 -1.8960 -9.4752 39 1 3.7466 -3.8750 -4.2817 40 1 2.1949 0.9110 2.6629 41 1 3.0374 -1.0544 4.3132 42 1 3.0093 -3.2810 2.9319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414490650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:42 Heat of formation + Delta-G solvation = 5.139610 kcal Electronic energy + Delta-G solvation = -28082.473712 eV Core-core repulsion = 24030.865805 eV Total energy + Delta-G solvation = -4051.607907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81740 -39.60371 -38.43280 -37.39177 -34.29798 -33.75637 -33.08519 -32.94318 -31.83914 -30.24732 -29.09422 -28.66459 -26.59044 -25.37463 -22.86342 -22.00078 -21.62965 -21.08257 -20.34657 -19.79833 -18.34250 -18.00497 -17.38586 -16.42898 -16.31249 -16.02462 -15.30053 -14.98802 -14.71206 -14.44093 -14.29470 -14.19824 -13.64528 -13.35921 -13.02777 -13.00985 -12.86618 -12.79463 -12.66562 -12.57765 -12.18984 -11.89022 -11.80164 -11.50138 -11.13220 -10.90220 -10.61101 -10.55413 -10.43126 -10.11741 -9.92225 -9.61851 -9.11176 -8.96964 -8.72720 -8.47477 -7.91939 -7.16778 -6.89766 -6.11755 -4.33175 1.49539 2.39615 2.70512 2.88267 3.15653 3.19199 3.20477 3.23355 3.31160 3.91763 4.10776 4.25276 4.32596 4.48514 4.74919 4.84321 4.84546 4.93758 4.99119 5.42920 5.49775 5.60969 5.69571 5.73774 5.84088 5.88114 5.95637 6.08742 6.15136 6.26126 6.52215 6.65305 6.82764 6.87208 6.89622 6.95916 7.26212 7.28982 7.40402 7.66499 7.78645 7.86176 8.21632 8.34889 8.70077 8.85267 9.10463 9.62016 10.31134 10.53459 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003437 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.822659 B = 8144.142440 C =10073.438433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.209 3.791 3 O -0.538 6.538 4 C 0.125 3.875 5 N -0.754 5.754 6 C 0.665 3.335 7 O -0.465 6.465 8 N -0.672 5.672 9 C 0.387 3.613 10 C -0.358 4.358 11 C -0.036 4.036 12 C -0.307 4.307 13 C 0.273 3.727 14 C -0.428 4.428 15 H 0.082 0.918 16 C 0.059 3.941 17 N -0.653 5.653 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.263 1.263 21 H -0.278 1.278 22 N -0.474 5.474 23 C -0.043 4.043 24 C -0.191 4.191 25 C -0.220 4.220 26 C -0.034 4.034 27 O -0.164 6.164 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.385 0.615 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.388 0.612 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.272 0.728 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 6.397 16.493 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 O -0.344 6.344 4 C -0.001 4.001 5 N -0.415 5.415 6 C 0.363 3.637 7 O -0.329 6.329 8 N -0.321 5.321 9 C 0.148 3.852 10 C -0.384 4.384 11 C -0.060 4.060 12 C -0.331 4.331 13 C 0.148 3.852 14 C -0.458 4.458 15 H 0.100 0.900 16 C -0.170 4.170 17 N -0.271 5.271 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.203 1.203 22 N -0.192 5.192 23 C -0.094 4.094 24 C -0.210 4.210 25 C -0.239 4.239 26 C -0.102 4.102 27 O -0.060 6.060 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.222 0.778 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.252 4.861 17.161 18.130 hybrid contribution 0.335 0.578 -0.261 0.717 sum -2.917 5.439 16.900 17.992 Atomic orbital electron populations 1.21776 0.90328 1.03494 1.03531 1.19640 0.95232 0.81126 0.87337 1.86578 1.27796 1.23730 1.96330 1.21565 0.99438 0.96582 0.82508 1.45114 1.58502 1.33735 1.04149 1.16375 0.82699 0.84656 0.79929 1.91368 1.35526 1.22658 1.83379 1.42529 1.59198 1.26305 1.04058 1.18315 0.93036 0.91790 0.82102 1.20434 1.17566 1.07688 0.92692 1.20546 0.95578 0.94731 0.95132 1.21617 1.10240 1.02500 0.98701 1.18375 0.89644 0.91602 0.85560 1.19554 1.25655 1.06979 0.93617 0.89997 1.26148 0.97023 0.98248 0.95576 1.70266 1.29449 1.29731 0.97655 0.86538 0.80946 0.81790 0.78898 1.19803 1.18700 1.20319 1.68628 1.16952 1.08432 1.25212 1.23035 1.05921 0.81915 0.98537 1.21554 1.05922 1.00933 0.92624 1.21860 1.07916 0.92659 1.01504 1.24148 1.03049 1.00728 0.82295 1.84086 1.64634 1.25405 1.31858 0.90357 0.91297 0.90557 0.76660 0.90345 0.91446 0.77795 0.77193 0.89141 0.88642 0.88607 0.91613 0.83196 0.83421 0.78013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.65 37.16 0.32 -0.98 16 2 C 0.21 2.23 0.99 -91.77 -0.09 2.14 16 3 O -0.54 -5.20 12.33 -35.23 -0.43 -5.63 16 4 C 0.12 1.74 4.54 -4.04 -0.02 1.72 16 5 N -0.75 -11.23 5.15 -65.23 -0.34 -11.57 16 6 C 0.67 13.80 8.52 -86.92 -0.74 13.06 16 7 O -0.47 -12.07 12.23 5.30 0.06 -12.00 16 8 N -0.67 -13.54 5.39 -15.79 -0.09 -13.62 16 9 C 0.39 9.64 7.43 -154.99 -1.15 8.49 16 10 C -0.36 -8.16 9.96 -38.89 -0.39 -8.55 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.31 -7.88 9.83 -38.66 -0.38 -8.26 16 13 C 0.27 7.83 6.53 -85.00 -0.55 7.27 16 14 C -0.43 -11.99 9.13 -37.73 -0.34 -12.33 16 15 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 16 C 0.06 1.60 5.48 -17.34 -0.09 1.51 16 17 N -0.65 -18.51 9.19 55.55 0.51 -18.00 16 18 Si 0.89 19.63 29.56 -169.99 -5.03 14.61 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 N -0.47 -13.58 5.77 -10.26 -0.06 -13.64 16 23 C -0.04 -0.48 5.86 -35.63 -0.21 -0.69 16 24 C -0.19 -1.92 10.36 -39.70 -0.41 -2.33 16 25 C -0.22 -2.03 10.91 -39.70 -0.43 -2.46 16 26 C -0.03 -0.32 12.09 29.42 0.36 0.03 16 27 O -0.16 -2.01 10.26 5.72 0.06 -1.95 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.70 6.86 -51.93 -0.36 0.34 16 31 H 0.38 2.90 9.04 45.56 0.41 3.31 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.39 4.66 7.21 -40.82 -0.29 4.37 16 35 H 0.40 6.13 8.72 -40.82 -0.36 5.77 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 39 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -35.27 360.45 -8.78 -44.05 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -4.37 Total: 14.92 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.54 Total: -2.59 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.03 Total: -56.83 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.31 Total: -19.59 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.27 -8.78 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.186 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds