Wall clock time and date at job start Tue Mar 31 2020 16:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30275 * 126.28301 * 2 1 4 4 N 1.28671 * 109.38204 * 179.97438 * 3 2 1 5 5 C 1.30281 * 109.37992 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.27975 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47298 * 90.02014 * 6 5 4 8 8 C 1.50697 * 109.47300 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99979 * 359.72931 * 8 7 6 10 10 N 1.34775 * 120.00258 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00131 * 179.72741 * 10 8 7 12 12 C 1.50697 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93075 * 269.72349 * 12 11 10 14 14 C 1.38102 * 120.07106 * 179.73001 * 13 12 11 15 15 C 1.38878 * 119.92721 * 0.56973 * 14 13 12 16 16 O 1.35748 * 120.06779 * 179.68659 * 15 14 13 17 17 C 1.34840 * 117.00059 * 174.48884 * 16 15 14 18 18 H 1.07999 * 119.99720 * 5.04753 * 17 16 15 19 19 C 1.38650 * 120.00029 * 185.05555 * 17 16 15 20 20 N 1.31560 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99980 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47039 * 90.00120 * 21 19 17 23 23 H 1.48504 * 109.47214 * 209.99787 * 21 19 17 24 24 H 1.48499 * 109.47452 * 330.00151 * 21 19 17 25 25 C 1.38880 * 119.86498 * 359.70431 * 15 14 13 26 26 C 1.38099 * 119.92981 * 359.97438 * 25 15 14 27 27 O 1.34356 * 107.43252 * 0.23436 * 5 4 3 28 28 H 1.09001 * 109.46904 * 89.97577 * 1 2 3 29 29 H 1.08995 * 109.47075 * 209.97603 * 1 2 3 30 30 H 1.09001 * 109.47261 * 329.98331 * 1 2 3 31 31 H 1.08996 * 109.47117 * 330.01640 * 6 5 4 32 32 H 1.09001 * 109.46977 * 210.01863 * 6 5 4 33 33 H 1.09004 * 109.47192 * 60.00041 * 7 6 5 34 34 H 1.09001 * 109.46983 * 299.99845 * 7 6 5 35 35 H 0.96996 * 120.00108 * 359.72750 * 10 8 7 36 36 H 1.09005 * 109.46822 * 300.00079 * 11 10 8 37 37 H 1.08999 * 109.47302 * 60.00285 * 11 10 8 38 38 H 1.08004 * 119.96743 * 359.97438 * 13 12 11 39 39 H 1.07996 * 120.03793 * 180.27581 * 14 13 12 40 40 H 0.97005 * 120.00071 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.03825 * 179.97438 * 25 15 14 42 42 H 1.07997 * 119.97227 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4638 0.0003 7 6 5.2411 -1.7482 1.4427 8 6 6.4930 -2.5871 1.4427 9 8 6.9942 -2.9284 0.3923 10 7 7.0530 -2.9622 2.6098 11 6 8.2667 -3.7827 2.6097 12 6 8.6845 -4.0617 4.0305 13 6 9.5515 -3.1995 4.6767 14 6 9.9319 -3.4494 5.9806 15 6 9.4521 -4.5741 6.6389 16 8 9.8292 -4.8259 7.9184 17 6 9.2394 -5.8692 8.5364 18 1 8.5647 -6.5102 7.9885 19 6 9.4991 -6.1189 9.8753 20 7 10.3214 -5.3382 10.5426 21 14 8.6816 -7.5637 10.7316 22 1 9.5390 -8.7686 10.5969 23 1 8.4966 -7.2463 12.1705 24 1 7.3593 -7.8249 10.1083 25 6 8.5860 -5.4410 5.9854 26 6 8.2041 -5.1821 4.6837 27 8 2.3021 -1.0831 -0.0056 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 5.6147 -0.9262 -0.5132 32 1 4.6245 -2.4053 -0.5140 33 1 4.4440 -2.2859 1.9562 34 1 5.4342 -0.8068 1.9570 35 1 6.6524 -2.6889 3.4499 36 1 8.0684 -4.7245 2.0980 37 1 9.0654 -3.2499 2.0937 38 1 9.9285 -2.3278 4.1625 39 1 10.6055 -2.7734 6.4862 40 1 10.5028 -5.5127 11.4794 41 1 8.2115 -6.3168 6.4945 42 1 7.5309 -5.8560 4.1748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417631812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:11 Heat of formation + Delta-G solvation = -10.841200 kcal Electronic energy + Delta-G solvation = -25800.407208 eV Core-core repulsion = 21748.106321 eV Total energy + Delta-G solvation = -4052.300887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.59659 -39.94856 -39.10026 -36.96509 -36.52785 -34.94814 -34.47117 -32.54602 -32.37919 -30.36134 -30.14323 -28.60104 -26.39857 -25.50844 -24.36286 -23.05652 -22.38832 -22.10683 -20.70351 -20.46604 -18.14122 -18.02301 -17.56183 -17.26625 -16.95010 -16.09461 -15.99420 -15.26862 -15.02713 -14.81133 -14.63173 -14.21947 -13.95201 -13.90597 -13.74353 -13.59233 -13.39006 -13.21599 -12.85920 -12.82714 -12.76500 -12.64324 -12.21051 -12.16087 -11.78328 -11.68897 -11.44842 -11.26853 -11.02036 -10.85572 -10.74091 -10.52657 -10.14170 -9.79903 -9.47507 -9.08593 -8.95077 -8.33918 -7.37919 -6.56848 -4.15926 0.73992 1.82529 1.97637 2.03782 2.07935 2.48489 3.04131 3.06337 3.11253 3.16982 3.51525 3.86853 3.98030 4.30757 4.36639 4.44083 4.67471 4.72558 4.73909 4.86844 4.97600 4.98153 5.06986 5.12322 5.16958 5.20430 5.34309 5.35036 5.41562 5.50123 5.60433 5.74459 5.84822 6.07308 6.29622 6.38415 6.54831 6.75184 6.90650 7.08860 7.21555 7.30518 7.45200 7.66594 7.87589 7.93312 8.08905 8.88323 9.56007 10.60508 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.001767 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.537588 B =15839.675637 C =16755.992162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.158 3.842 3 N -0.290 5.290 4 N -0.283 5.283 5 C 0.168 3.832 6 C -0.007 4.007 7 C -0.141 4.141 8 C 0.514 3.486 9 O -0.547 6.547 10 N -0.719 5.719 11 C 0.179 3.821 12 C -0.217 4.217 13 C -0.054 4.054 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.051 4.051 27 O -0.225 6.225 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.128 0.872 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 6.099 -17.728 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 N -0.137 5.137 4 N -0.130 5.130 5 C -0.043 4.043 6 C -0.046 4.046 7 C -0.182 4.182 8 C 0.300 3.700 9 O -0.425 6.425 10 N -0.370 5.370 11 C 0.057 3.943 12 C -0.219 4.219 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.257 4.257 26 C -0.069 4.069 27 O -0.104 6.104 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.515 7.205 -18.069 24.882 hybrid contribution -0.976 -1.835 0.962 2.290 sum -16.491 5.370 -17.106 24.360 Atomic orbital electron populations 1.20368 0.80131 1.05837 1.05288 1.28061 0.97918 0.79644 0.99606 1.74419 0.96098 1.25645 1.17540 1.74433 1.12206 1.09198 1.17124 1.28044 0.85211 0.91685 0.99379 1.19921 0.87446 0.99124 0.98122 1.21656 0.97239 1.02093 0.97219 1.20298 0.85246 0.80347 0.84117 1.90720 1.64197 1.56371 1.31225 1.46353 1.28862 1.53438 1.08350 1.20008 0.85696 0.94479 0.94140 1.19195 1.06864 0.99900 0.95918 1.20539 0.95805 0.97528 0.93403 1.20225 1.07118 0.98673 0.95437 1.19445 0.91437 0.92460 0.86081 1.83981 1.56747 1.46805 1.19963 1.21358 1.26977 1.05083 0.93590 0.88901 1.25327 0.96788 0.98924 0.95431 1.70037 1.32471 1.36694 1.10021 0.85689 0.79270 0.79699 0.78658 1.19771 1.20159 1.19140 1.21161 1.05354 1.03115 0.96043 1.20638 0.97051 0.95453 0.93796 1.84794 1.17625 1.38359 1.69631 0.88284 0.88778 0.87456 0.86077 0.87498 0.88216 0.87729 0.76191 0.91465 0.91371 0.86914 0.86338 0.91834 0.85407 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.16 1.35 8.48 -12.94 -0.11 1.24 16 3 N -0.29 -3.37 12.22 32.55 0.40 -2.97 16 4 N -0.28 -3.45 12.22 32.55 0.40 -3.05 16 5 C 0.17 1.65 7.73 -12.94 -0.10 1.55 16 6 C -0.01 -0.06 5.13 -27.88 -0.14 -0.20 16 7 C -0.14 -1.08 5.68 -27.88 -0.16 -1.23 16 8 C 0.51 5.55 7.83 -10.99 -0.09 5.46 16 9 O -0.55 -7.72 15.98 5.55 0.09 -7.63 16 10 N -0.72 -7.81 5.55 -61.47 -0.34 -8.16 16 11 C 0.18 2.29 5.80 -5.19 -0.03 2.26 16 12 C -0.22 -3.29 5.25 -104.57 -0.55 -3.84 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 14 C -0.20 -3.83 9.99 -39.39 -0.39 -4.22 16 15 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 16 O -0.17 -4.71 9.76 0.03 0.00 -4.71 16 17 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 18 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.35 13.67 55.48 0.76 -23.60 16 21 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 25 C -0.24 -4.77 9.17 -39.39 -0.36 -5.14 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 27 O -0.22 -2.09 10.87 5.39 0.06 -2.03 16 28 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.12 0.99 8.10 -51.93 -0.42 0.56 16 32 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.85 8.46 -40.82 -0.35 3.50 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -33.74 372.60 -5.54 -39.28 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.11 Total: 4.84 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.38 Total: -12.31 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 1.21 Total: -37.77 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.15 Total: -14.37 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.74 -5.54 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.444 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds