Wall clock time and date at job start Tue Mar 31 2020 16:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30275 * 126.28301 * 2 1 4 4 N 1.28671 * 109.38204 * 179.97438 * 3 2 1 5 5 C 1.30281 * 109.37992 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.27975 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47298 * 90.02014 * 6 5 4 8 8 C 1.50697 * 109.47300 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99979 * 359.72931 * 8 7 6 10 10 N 1.34775 * 120.00258 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00131 * 179.72741 * 10 8 7 12 12 C 1.50697 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93075 * 269.72349 * 12 11 10 14 14 C 1.38102 * 120.07106 * 179.73001 * 13 12 11 15 15 C 1.38878 * 119.92721 * 0.56973 * 14 13 12 16 16 O 1.35748 * 120.06779 * 179.68659 * 15 14 13 17 17 C 1.34840 * 117.00059 * 174.48884 * 16 15 14 18 18 H 1.07999 * 119.99720 * 5.04753 * 17 16 15 19 19 C 1.38650 * 120.00029 * 185.05555 * 17 16 15 20 20 N 1.31560 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99980 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47039 * 90.00120 * 21 19 17 23 23 H 1.48504 * 109.47214 * 209.99787 * 21 19 17 24 24 H 1.48499 * 109.47452 * 330.00151 * 21 19 17 25 25 C 1.38880 * 119.86498 * 359.70431 * 15 14 13 26 26 C 1.38099 * 119.92981 * 359.97438 * 25 15 14 27 27 O 1.34356 * 107.43252 * 0.23436 * 5 4 3 28 28 H 1.09001 * 109.46904 * 89.97577 * 1 2 3 29 29 H 1.08995 * 109.47075 * 209.97603 * 1 2 3 30 30 H 1.09001 * 109.47261 * 329.98331 * 1 2 3 31 31 H 1.08996 * 109.47117 * 330.01640 * 6 5 4 32 32 H 1.09001 * 109.46977 * 210.01863 * 6 5 4 33 33 H 1.09004 * 109.47192 * 60.00041 * 7 6 5 34 34 H 1.09001 * 109.46983 * 299.99845 * 7 6 5 35 35 H 0.96996 * 120.00108 * 359.72750 * 10 8 7 36 36 H 1.09005 * 109.46822 * 300.00079 * 11 10 8 37 37 H 1.08999 * 109.47302 * 60.00285 * 11 10 8 38 38 H 1.08004 * 119.96743 * 359.97438 * 13 12 11 39 39 H 1.07996 * 120.03793 * 180.27581 * 14 13 12 40 40 H 0.97005 * 120.00071 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.03825 * 179.97438 * 25 15 14 42 42 H 1.07997 * 119.97227 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4638 0.0003 7 6 5.2411 -1.7482 1.4427 8 6 6.4930 -2.5871 1.4427 9 8 6.9942 -2.9284 0.3923 10 7 7.0530 -2.9622 2.6098 11 6 8.2667 -3.7827 2.6097 12 6 8.6845 -4.0617 4.0305 13 6 9.5515 -3.1995 4.6767 14 6 9.9319 -3.4494 5.9806 15 6 9.4521 -4.5741 6.6389 16 8 9.8292 -4.8259 7.9184 17 6 9.2394 -5.8692 8.5364 18 1 8.5647 -6.5102 7.9885 19 6 9.4991 -6.1189 9.8753 20 7 10.3214 -5.3382 10.5426 21 14 8.6816 -7.5637 10.7316 22 1 9.5390 -8.7686 10.5969 23 1 8.4966 -7.2463 12.1705 24 1 7.3593 -7.8249 10.1083 25 6 8.5860 -5.4410 5.9854 26 6 8.2041 -5.1821 4.6837 27 8 2.3021 -1.0831 -0.0056 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 5.6147 -0.9262 -0.5132 32 1 4.6245 -2.4053 -0.5140 33 1 4.4440 -2.2859 1.9562 34 1 5.4342 -0.8068 1.9570 35 1 6.6524 -2.6889 3.4499 36 1 8.0684 -4.7245 2.0980 37 1 9.0654 -3.2499 2.0937 38 1 9.9285 -2.3278 4.1625 39 1 10.6055 -2.7734 6.4862 40 1 10.5028 -5.5127 11.4794 41 1 8.2115 -6.3168 6.4945 42 1 7.5309 -5.8560 4.1748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417631812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:10 Heat of formation + Delta-G solvation = -37.971148 kcal Electronic energy + Delta-G solvation = -25801.583651 eV Core-core repulsion = 21748.106321 eV Total energy + Delta-G solvation = -4053.477330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.30145 -41.04436 -40.54726 -38.51832 -37.25539 -35.80256 -35.42722 -34.27893 -33.06392 -31.84290 -31.43725 -29.27158 -27.75443 -26.89096 -25.47278 -23.69713 -23.64610 -23.12429 -22.12987 -21.34938 -19.87515 -18.96552 -18.69747 -18.26602 -17.88752 -17.02442 -16.89974 -16.40824 -16.31747 -15.98430 -15.72627 -15.54004 -15.43987 -15.09081 -14.66678 -14.46464 -14.37737 -14.12713 -14.04178 -13.63924 -13.57185 -13.52175 -13.29005 -13.23870 -13.02200 -12.95256 -12.55520 -12.39608 -12.35022 -12.22732 -12.11945 -11.94855 -11.20162 -11.07859 -10.79800 -10.52188 -10.05205 -9.80801 -9.00837 -8.48540 -6.16901 0.08125 0.54845 0.57920 1.21681 1.27105 1.35746 1.44075 1.52814 1.63885 2.16736 2.27261 2.79994 2.91757 3.18052 3.40949 3.48776 3.63954 3.80034 3.86903 4.03195 4.03578 4.15789 4.17925 4.30885 4.39063 4.47307 4.56524 4.57283 4.57581 4.73087 4.78081 4.80264 4.82165 4.89960 5.04977 5.06385 5.14332 5.27029 5.44007 5.53183 5.69370 5.75207 6.01249 6.16622 6.57528 6.96268 7.21777 7.23423 7.75719 8.74216 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.001767 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.537588 B =15839.675637 C =16755.992162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.170 3.830 3 N -0.333 5.333 4 N -0.318 5.318 5 C 0.171 3.829 6 C -0.002 4.002 7 C -0.130 4.130 8 C 0.520 3.480 9 O -0.579 6.579 10 N -0.715 5.715 11 C 0.184 3.816 12 C -0.182 4.182 13 C -0.044 4.044 14 C -0.206 4.206 15 C 0.121 3.879 16 O -0.230 6.230 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.251 1.251 25 C -0.245 4.245 26 C -0.045 4.045 27 O -0.228 6.228 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.167 5.541 -20.137 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 N -0.179 5.179 4 N -0.163 5.163 5 C -0.041 4.041 6 C -0.041 4.041 7 C -0.171 4.171 8 C 0.307 3.693 9 O -0.459 6.459 10 N -0.367 5.367 11 C 0.061 3.939 12 C -0.184 4.184 13 C -0.063 4.063 14 C -0.225 4.225 15 C 0.070 3.930 16 O -0.136 6.136 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.264 4.264 26 C -0.064 4.064 27 O -0.108 6.108 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.165 0.835 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.187 6.683 -20.532 28.231 hybrid contribution -0.256 -1.510 1.283 1.998 sum -18.443 5.173 -19.249 27.156 Atomic orbital electron populations 1.20728 0.76598 1.07356 1.06971 1.29068 0.99442 0.78758 0.96810 1.74355 0.96384 1.27187 1.19966 1.74351 1.12984 1.10466 1.18521 1.28245 0.85827 0.91260 0.98732 1.19935 0.86633 0.99074 0.98493 1.21594 0.96125 1.02126 0.97248 1.20672 0.85574 0.79806 0.83252 1.90720 1.65243 1.57639 1.32330 1.46172 1.28264 1.53188 1.09049 1.19902 0.86789 0.95401 0.91823 1.19524 1.04078 0.98078 0.96676 1.20899 0.94990 0.98525 0.91865 1.20460 1.07237 0.97965 0.96874 1.20010 0.93235 0.94337 0.85382 1.83950 1.59278 1.48159 1.22257 1.21834 1.27318 1.05477 0.94294 0.87837 1.26589 0.97425 1.02044 0.95970 1.70183 1.35430 1.39624 1.10438 0.84592 0.78702 0.75725 0.77255 1.18928 1.19742 1.17475 1.21258 1.05082 1.02544 0.97499 1.20959 0.96872 0.96233 0.92294 1.84817 1.17541 1.38610 1.69840 0.86297 0.86699 0.86394 0.86483 0.86726 0.86163 0.86743 0.75138 0.90829 0.90790 0.83488 0.86841 0.91826 0.86207 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.23 0.75 0.53 16 2 C 0.17 2.60 8.48 88.34 0.75 3.35 16 3 N -0.33 -7.48 12.22 -165.50 -2.02 -9.50 16 4 N -0.32 -7.50 12.22 -165.50 -2.02 -9.53 16 5 C 0.17 3.10 7.73 88.34 0.68 3.78 16 6 C 0.00 -0.03 5.13 29.85 0.15 0.12 16 7 C -0.13 -1.57 5.68 29.85 0.17 -1.40 16 8 C 0.52 9.44 7.83 87.66 0.69 10.13 16 9 O -0.58 -14.68 15.98 -3.04 -0.05 -14.73 16 10 N -0.72 -12.67 5.55 -466.78 -2.59 -15.26 16 11 C 0.18 3.92 5.80 85.63 0.50 4.42 16 12 C -0.18 -4.88 5.25 -19.83 -0.10 -4.98 16 13 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 14 C -0.21 -8.11 9.99 22.39 0.22 -7.88 16 15 C 0.12 5.68 6.65 22.58 0.15 5.83 16 16 O -0.23 -13.36 9.76 -22.81 -0.22 -13.58 16 17 C -0.41 -23.20 9.49 67.92 0.64 -22.56 16 18 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 19 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 20 N -0.92 -55.17 13.67 21.61 0.30 -54.88 16 21 Si 1.02 41.47 29.55 68.60 2.03 43.49 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 24 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 25 C -0.24 -9.77 9.17 22.39 0.21 -9.56 16 26 C -0.05 -1.36 9.69 22.25 0.22 -1.14 16 27 O -0.23 -3.78 10.87 -3.61 -0.04 -3.82 16 28 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.12 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.41 6.14 8.46 -92.71 -0.78 5.35 16 36 H 0.07 1.58 8.08 -2.38 -0.02 1.56 16 37 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 41 H 0.12 4.91 5.64 -2.91 -0.02 4.90 16 42 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -79.16 372.60 1.37 -77.79 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.29 Total: 21.27 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 5.70 Total: -21.26 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -6.34 Total: -89.16 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.31 Total: -32.13 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -79.16 1.37 -77.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417631812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.818 kcal (2) G-P(sol) polarization free energy of solvation -79.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds