Wall clock time and date at job start Tue Mar 31 2020 16:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47269 * 2 1 4 4 N 1.46495 * 109.46832 * 239.99918 * 2 1 3 5 5 C 1.34775 * 120.00322 * 60.00537 * 4 2 1 6 6 O 1.21283 * 119.99767 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00412 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47504 * 179.97438 * 7 5 4 9 9 C 1.38322 * 119.96374 * 269.72393 * 8 7 5 10 10 C 1.38285 * 120.13704 * 179.76503 * 9 8 7 11 11 C 1.38121 * 120.06490 * 0.50490 * 10 9 8 12 12 C 1.38856 * 119.93510 * 359.75367 * 11 10 9 13 13 O 1.35745 * 120.07139 * 179.97438 * 12 11 10 14 14 C 1.34833 * 117.00027 * 354.48062 * 13 12 11 15 15 H 1.07993 * 119.99798 * 5.06086 * 14 13 12 16 16 C 1.38659 * 120.00043 * 185.05891 * 14 13 12 17 17 N 1.31554 * 119.99994 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47352 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47014 * 119.99761 * 18 16 14 21 21 H 1.48499 * 109.46932 * 239.99579 * 18 16 14 22 22 C 1.38078 * 119.96405 * 89.99397 * 8 7 5 23 23 C 1.50702 * 109.46833 * 119.99914 * 2 1 3 24 24 N 1.34490 * 126.29234 * 299.71296 * 23 2 1 25 25 C 1.31130 * 105.61874 * 180.26526 * 24 23 2 26 26 O 1.33647 * 106.89305 * 359.97438 * 25 24 23 27 27 N 1.21298 * 109.81561 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46780 * 300.00464 * 1 2 3 29 29 H 1.09002 * 109.46583 * 59.99611 * 1 2 3 30 30 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47488 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47635 * 299.99744 * 3 2 1 33 33 H 1.09004 * 109.47598 * 60.00037 * 3 2 1 34 34 H 0.97006 * 120.00054 * 240.00359 * 4 2 1 35 35 H 1.09007 * 109.46954 * 299.99678 * 7 5 4 36 36 H 1.08997 * 109.47285 * 59.99240 * 7 5 4 37 37 H 1.08002 * 119.93217 * 359.97438 * 9 8 7 38 38 H 1.07997 * 119.96494 * 180.25484 * 10 9 8 39 39 H 1.08004 * 120.03329 * 179.76755 * 11 10 9 40 40 H 0.97002 * 120.00140 * 180.02562 * 17 16 14 41 41 H 1.08003 * 120.03462 * 359.96509 * 22 8 7 42 42 H 1.07995 * 126.55036 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.6928 -0.2302 -2.4203 6 8 0.9953 0.7557 -2.5315 7 6 2.1955 -0.9402 -3.6507 8 6 1.6927 -0.2302 -4.8812 9 6 0.4869 -0.6011 -5.4486 10 6 0.0198 0.0512 -6.5749 11 6 0.7614 1.0686 -7.1428 12 6 1.9748 1.4397 -6.5788 13 8 2.7062 2.4388 -7.1350 14 6 2.2562 2.9527 -8.2975 15 1 1.3099 2.6255 -8.7021 16 6 3.0084 3.9014 -8.9734 17 7 4.1614 4.2996 -8.4808 18 14 2.3846 4.6138 -10.5836 19 1 1.0720 4.0054 -10.9186 20 1 2.2274 6.0841 -10.4463 21 1 3.3581 4.3189 -11.6655 22 6 2.4387 0.7861 -5.4443 23 6 2.0323 -0.7104 1.2305 24 7 1.7911 -0.3599 2.5063 25 6 2.4211 -1.2448 3.2408 26 8 3.0172 -2.0946 2.3989 27 7 2.7817 -1.7718 1.2536 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 2.5760 -1.4794 -1.1072 35 1 3.2856 -0.9398 -3.6505 36 1 1.8326 -1.9680 -3.6509 37 1 -0.0925 -1.3995 -5.0090 38 1 -0.9240 -0.2379 -7.0131 39 1 0.3979 1.5752 -8.0247 40 1 4.6875 4.9635 -8.9535 41 1 3.3820 1.0726 -5.0030 42 1 2.4523 -1.2801 4.3197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420174762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:13 Heat of formation + Delta-G solvation = 39.544116 kcal Electronic energy + Delta-G solvation = -27376.898853 eV Core-core repulsion = 23326.782838 eV Total energy + Delta-G solvation = -4050.116015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.08966 -40.28577 -38.89763 -37.32473 -36.35746 -35.22399 -32.68583 -32.42910 -32.16612 -31.18312 -29.12152 -27.49513 -27.00362 -25.38826 -25.12597 -24.10143 -22.18511 -21.53831 -20.67765 -19.78232 -18.69132 -18.49831 -17.58225 -17.12367 -16.82214 -16.49859 -15.42276 -15.31814 -14.93727 -14.48336 -14.40679 -14.33824 -13.93947 -13.84836 -13.42095 -13.36342 -13.02167 -12.65888 -12.49712 -12.35043 -12.30994 -12.01210 -11.97598 -11.75707 -11.58048 -11.46212 -11.36162 -11.22900 -10.79324 -10.72339 -10.58859 -10.56526 -10.39134 -9.60867 -9.27948 -9.24252 -8.79030 -8.01193 -7.15992 -6.39229 -3.98042 0.73415 1.78093 2.11977 2.44532 2.55139 2.72392 2.82674 3.16020 3.17208 3.19983 3.22890 3.81288 4.01226 4.45300 4.58376 4.78193 4.80459 4.93864 5.08934 5.15621 5.16980 5.27246 5.43794 5.52583 5.53045 5.56123 5.61077 5.67140 5.71890 5.80824 5.98806 6.07931 6.15373 6.23474 6.31858 6.39649 6.71350 6.97476 7.13189 7.32360 7.39691 7.43139 7.49972 7.70250 7.88596 8.06176 8.27128 9.06775 9.78215 10.79225 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002266 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.158917 B =12352.700738 C =12815.734017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.271 3.729 3 C -0.160 4.160 4 N -0.734 5.734 5 C 0.522 3.478 6 O -0.510 6.510 7 C -0.093 4.093 8 C -0.032 4.032 9 C -0.196 4.196 10 C -0.075 4.075 11 C -0.230 4.230 12 C 0.155 3.845 13 O -0.180 6.180 14 C -0.389 4.389 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.173 4.173 23 C 0.174 3.826 24 N -0.474 5.474 25 C 0.162 3.838 26 O 0.080 5.920 27 N -0.381 5.381 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.404 0.596 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 -13.434 21.808 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.183 3.817 3 C -0.219 4.219 4 N -0.390 5.390 5 C 0.309 3.691 6 O -0.384 6.384 7 C -0.133 4.133 8 C -0.033 4.033 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.101 3.899 13 O -0.084 6.084 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.193 4.193 23 C -0.099 4.099 24 N -0.207 5.207 25 C -0.079 4.079 26 O 0.021 5.979 27 N -0.087 5.087 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -3.802 -12.466 20.905 24.635 hybrid contribution 0.023 -0.137 -0.229 0.268 sum -3.779 -12.603 20.676 24.508 Atomic orbital electron populations 1.22231 0.91663 1.02782 1.05014 1.18382 0.94880 0.91186 0.77209 1.22245 1.01291 0.93275 1.05070 1.46115 1.55389 1.32799 1.04684 1.20717 0.80026 0.84714 0.83615 1.90702 1.36222 1.25209 1.86225 1.20587 1.02527 0.99732 0.90416 1.18624 0.94853 0.95930 0.93882 1.20343 0.97401 1.04070 0.99656 1.20673 0.98100 0.95222 0.95303 1.21176 0.97107 1.02486 1.04193 1.19272 0.90397 0.87903 0.92284 1.83977 1.46615 1.41969 1.35835 1.21364 1.05783 1.22367 0.97075 0.89078 1.25277 0.95370 0.96624 0.99334 1.70051 1.11733 1.29600 1.38621 0.85656 0.78766 0.78861 0.80185 1.19125 1.20199 1.20201 1.19942 1.01723 0.99373 0.98243 1.25882 0.96656 0.92570 0.94822 1.71794 1.22400 1.25704 1.00763 1.30582 0.90586 0.85316 1.01401 1.85309 1.55499 1.45990 1.11131 1.74524 1.18373 1.16384 0.99417 0.90814 0.88504 0.92613 0.92449 0.88404 0.90796 0.76059 0.88147 0.88304 0.87967 0.87512 0.85641 0.92174 0.86857 0.71929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.38 37.16 0.31 -1.50 16 2 C 0.27 3.14 1.02 -132.97 -0.14 3.01 16 3 C -0.16 -1.96 8.38 37.15 0.31 -1.65 16 4 N -0.73 -8.60 5.10 -48.69 -0.25 -8.84 16 5 C 0.52 7.53 7.24 -10.99 -0.08 7.45 16 6 O -0.51 -9.23 12.24 5.55 0.07 -9.17 16 7 C -0.09 -1.26 5.83 -29.04 -0.17 -1.43 16 8 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 9 C -0.20 -3.55 9.70 -39.53 -0.38 -3.93 16 10 C -0.07 -1.45 10.04 -39.61 -0.40 -1.84 16 11 C -0.23 -5.24 9.17 -39.40 -0.36 -5.60 16 12 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 13 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16 14 C -0.39 -11.18 9.49 30.89 0.29 -10.89 16 15 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 18 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.17 -3.82 9.65 -39.39 -0.38 -4.20 16 23 C 0.17 1.82 6.52 -156.37 -1.02 0.80 16 24 N -0.47 -4.21 11.55 -13.72 -0.16 -4.36 16 25 C 0.16 0.79 13.40 51.99 0.70 1.49 16 26 O 0.08 0.57 11.31 18.09 0.20 0.78 16 27 N -0.38 -3.76 11.11 30.88 0.34 -3.42 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.31 6.17 -51.93 -0.32 0.99 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.43 6.17 -51.93 -0.32 1.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.07 7.68 -40.82 -0.31 3.75 16 35 H 0.10 1.19 8.09 -51.92 -0.42 0.77 16 36 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 42 H 0.27 -0.33 8.06 -52.49 -0.42 -0.75 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -35.86 361.08 -5.62 -41.48 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.88 Total: 7.30 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.13 Total: -14.74 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.70 Total: -41.77 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.27 Total: -13.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.86 -5.62 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420174762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.027 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds