Wall clock time and date at job start Tue Mar 31 2020 16:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47269 * 2 1 4 4 N 1.46495 * 109.46832 * 239.99918 * 2 1 3 5 5 C 1.34775 * 120.00322 * 60.00537 * 4 2 1 6 6 O 1.21283 * 119.99767 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00412 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47504 * 179.97438 * 7 5 4 9 9 C 1.38322 * 119.96374 * 269.72393 * 8 7 5 10 10 C 1.38285 * 120.13704 * 179.76503 * 9 8 7 11 11 C 1.38121 * 120.06490 * 0.50490 * 10 9 8 12 12 C 1.38856 * 119.93510 * 359.75367 * 11 10 9 13 13 O 1.35745 * 120.07139 * 179.97438 * 12 11 10 14 14 C 1.34833 * 117.00027 * 354.48062 * 13 12 11 15 15 H 1.07993 * 119.99798 * 5.06086 * 14 13 12 16 16 C 1.38659 * 120.00043 * 185.05891 * 14 13 12 17 17 N 1.31554 * 119.99994 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47352 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47014 * 119.99761 * 18 16 14 21 21 H 1.48499 * 109.46932 * 239.99579 * 18 16 14 22 22 C 1.38078 * 119.96405 * 89.99397 * 8 7 5 23 23 C 1.50702 * 109.46833 * 119.99914 * 2 1 3 24 24 N 1.34490 * 126.29234 * 299.71296 * 23 2 1 25 25 C 1.31130 * 105.61874 * 180.26526 * 24 23 2 26 26 O 1.33647 * 106.89305 * 359.97438 * 25 24 23 27 27 N 1.21298 * 109.81561 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46780 * 300.00464 * 1 2 3 29 29 H 1.09002 * 109.46583 * 59.99611 * 1 2 3 30 30 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47488 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47635 * 299.99744 * 3 2 1 33 33 H 1.09004 * 109.47598 * 60.00037 * 3 2 1 34 34 H 0.97006 * 120.00054 * 240.00359 * 4 2 1 35 35 H 1.09007 * 109.46954 * 299.99678 * 7 5 4 36 36 H 1.08997 * 109.47285 * 59.99240 * 7 5 4 37 37 H 1.08002 * 119.93217 * 359.97438 * 9 8 7 38 38 H 1.07997 * 119.96494 * 180.25484 * 10 9 8 39 39 H 1.08004 * 120.03329 * 179.76755 * 11 10 9 40 40 H 0.97002 * 120.00140 * 180.02562 * 17 16 14 41 41 H 1.08003 * 120.03462 * 359.96509 * 22 8 7 42 42 H 1.07995 * 126.55036 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.6928 -0.2302 -2.4203 6 8 0.9953 0.7557 -2.5315 7 6 2.1955 -0.9402 -3.6507 8 6 1.6927 -0.2302 -4.8812 9 6 0.4869 -0.6011 -5.4486 10 6 0.0198 0.0512 -6.5749 11 6 0.7614 1.0686 -7.1428 12 6 1.9748 1.4397 -6.5788 13 8 2.7062 2.4388 -7.1350 14 6 2.2562 2.9527 -8.2975 15 1 1.3099 2.6255 -8.7021 16 6 3.0084 3.9014 -8.9734 17 7 4.1614 4.2996 -8.4808 18 14 2.3846 4.6138 -10.5836 19 1 1.0720 4.0054 -10.9186 20 1 2.2274 6.0841 -10.4463 21 1 3.3581 4.3189 -11.6655 22 6 2.4387 0.7861 -5.4443 23 6 2.0323 -0.7104 1.2305 24 7 1.7911 -0.3599 2.5063 25 6 2.4211 -1.2448 3.2408 26 8 3.0172 -2.0946 2.3989 27 7 2.7817 -1.7718 1.2536 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 2.5760 -1.4794 -1.1072 35 1 3.2856 -0.9398 -3.6505 36 1 1.8326 -1.9680 -3.6509 37 1 -0.0925 -1.3995 -5.0090 38 1 -0.9240 -0.2379 -7.0131 39 1 0.3979 1.5752 -8.0247 40 1 4.6875 4.9635 -8.9535 41 1 3.3820 1.0726 -5.0030 42 1 2.4523 -1.2801 4.3197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420174762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:13 Heat of formation + Delta-G solvation = 12.050853 kcal Electronic energy + Delta-G solvation = -27378.091051 eV Core-core repulsion = 23326.782838 eV Total energy + Delta-G solvation = -4051.308213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.69974 -41.44771 -40.60837 -38.56688 -37.78632 -36.02635 -34.35425 -33.81096 -33.13070 -32.38724 -30.84220 -28.45753 -28.42304 -27.24517 -26.07149 -24.66566 -23.45719 -23.11492 -22.08749 -20.84757 -19.70934 -19.25502 -19.11343 -18.68487 -17.96248 -17.35051 -16.82814 -16.61066 -16.16911 -15.98585 -15.91864 -15.55502 -15.31269 -15.08673 -14.92898 -14.74381 -14.33513 -13.99993 -13.68331 -13.63070 -13.37903 -13.30105 -13.00433 -12.90322 -12.85489 -12.59809 -12.47030 -12.41484 -12.37495 -12.21315 -12.09529 -12.07990 -11.23040 -11.19867 -10.85140 -10.77164 -10.27364 -9.63670 -8.97276 -8.47125 -6.15474 0.22822 0.51470 0.76422 1.16697 1.33841 1.42596 1.52705 1.60300 1.85764 2.13915 2.17542 2.50584 2.83548 3.15339 3.26459 3.44153 3.62987 3.80212 3.85695 4.05012 4.09544 4.11340 4.32055 4.41754 4.54972 4.58832 4.60463 4.61077 4.65718 4.68811 4.73183 4.74494 4.95264 5.06772 5.12913 5.13538 5.15177 5.30788 5.33391 5.65683 5.73413 5.76000 6.03250 6.23091 6.43781 6.97637 7.10413 7.23261 7.79687 8.76775 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002266 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.158917 B =12352.700738 C =12815.734017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.269 3.731 3 C -0.154 4.154 4 N -0.719 5.719 5 C 0.524 3.476 6 O -0.553 6.553 7 C -0.091 4.091 8 C -0.023 4.023 9 C -0.178 4.178 10 C -0.073 4.073 11 C -0.246 4.246 12 C 0.112 3.888 13 O -0.235 6.235 14 C -0.412 4.412 15 H 0.101 0.899 16 C -0.026 4.026 17 N -0.923 5.923 18 Si 1.020 2.980 19 H -0.251 1.251 20 H -0.269 1.269 21 H -0.266 1.266 22 C -0.191 4.191 23 C 0.159 3.841 24 N -0.507 5.507 25 C 0.192 3.808 26 O 0.083 5.917 27 N -0.396 5.396 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.415 0.585 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.272 0.728 41 H 0.105 0.895 42 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 -16.367 23.744 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.181 3.819 3 C -0.213 4.213 4 N -0.374 5.374 5 C 0.312 3.688 6 O -0.430 6.430 7 C -0.130 4.130 8 C -0.024 4.024 9 C -0.197 4.197 10 C -0.091 4.091 11 C -0.265 4.265 12 C 0.062 3.938 13 O -0.142 6.142 14 C -0.488 4.488 15 H 0.118 0.882 16 C -0.222 4.222 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.175 1.175 20 H -0.194 1.194 21 H -0.191 1.191 22 C -0.210 4.210 23 C -0.114 4.114 24 N -0.239 5.239 25 C -0.047 4.047 26 O 0.023 5.977 27 N -0.103 5.103 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.252 0.748 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.336 0.664 Dipole moment (debyes) X Y Z Total from point charges -5.323 -15.464 22.889 28.132 hybrid contribution 0.414 0.506 -0.479 0.811 sum -4.909 -14.958 22.410 27.387 Atomic orbital electron populations 1.22113 0.91632 1.02886 1.04199 1.18290 0.94964 0.90764 0.77861 1.22138 1.00928 0.94101 1.04109 1.45941 1.54651 1.32705 1.04111 1.20801 0.79450 0.84098 0.84499 1.90712 1.38423 1.27058 1.86855 1.20689 1.03792 1.01001 0.87560 1.19103 0.94322 0.94167 0.94819 1.20958 0.96792 1.03691 0.98217 1.21124 0.98953 0.93633 0.95372 1.21292 0.96897 1.03859 1.04431 1.19865 0.91655 0.88494 0.93767 1.83937 1.48705 1.44572 1.36977 1.21864 1.06482 1.22972 0.97523 0.88210 1.26620 0.95458 0.96718 1.03448 1.70198 1.13711 1.31222 1.41005 0.84511 0.78811 0.78014 0.74727 1.17480 1.19393 1.19121 1.20196 1.02312 1.00616 0.97883 1.25575 0.97739 0.93215 0.94905 1.71776 1.24237 1.27452 1.00444 1.31753 0.87395 0.82791 1.02796 1.85275 1.55486 1.46207 1.10739 1.74508 1.18518 1.16356 1.00893 0.90036 0.90839 0.91935 0.92790 0.91203 0.89834 0.74819 0.86313 0.83994 0.83526 0.83709 0.86502 0.91878 0.87707 0.66424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.38 71.98 0.60 -2.70 16 2 C 0.27 6.00 1.02 2.86 0.00 6.00 16 3 C -0.15 -3.83 8.38 71.98 0.60 -3.23 16 4 N -0.72 -15.75 5.10 -426.34 -2.17 -17.92 16 5 C 0.52 14.40 7.24 87.66 0.63 15.03 16 6 O -0.55 -20.10 12.24 -3.04 -0.04 -20.14 16 7 C -0.09 -2.22 5.83 29.10 0.17 -2.05 16 8 C -0.02 -0.83 4.37 -19.88 -0.09 -0.91 16 9 C -0.18 -5.87 9.70 22.30 0.22 -5.65 16 10 C -0.07 -2.67 10.04 22.25 0.22 -2.44 16 11 C -0.25 -11.40 9.17 22.39 0.21 -11.20 16 12 C 0.11 5.95 6.65 22.58 0.15 6.10 16 13 O -0.23 -14.87 9.76 -22.71 -0.22 -15.10 16 14 C -0.41 -25.06 9.49 67.92 0.64 -24.42 16 15 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 16 C -0.03 -1.50 5.49 84.84 0.47 -1.04 16 17 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16 18 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 C -0.19 -8.69 9.65 22.39 0.22 -8.47 16 23 C 0.16 3.03 6.52 138.46 0.90 3.93 16 24 N -0.51 -7.75 11.55 -315.37 -3.64 -11.40 16 25 C 0.19 1.14 13.40 130.51 1.75 2.89 16 26 O 0.08 0.95 11.31 74.80 0.85 1.79 16 27 N -0.40 -6.93 11.11 -60.38 -0.67 -7.60 16 28 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 2.00 6.17 -2.39 -0.01 1.98 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 2.15 6.17 -2.39 -0.01 2.14 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.41 7.41 7.68 -92.70 -0.71 6.69 16 35 H 0.12 2.52 8.09 -2.38 -0.02 2.50 16 36 H 0.14 2.29 8.08 -2.39 -0.02 2.27 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.32 -2.55 8.06 -2.91 -0.02 -2.57 16 Total: -1.00 -86.49 361.08 3.49 -83.00 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.37 Total: 27.28 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 6.70 Total: -28.16 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -6.19 Total: -95.12 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: 0.59 Total: -33.44 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -86.49 3.49 -83.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420174762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.046 kcal (2) G-P(sol) polarization free energy of solvation -86.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds