Wall clock time and date at job start Tue Mar 31 2020 16:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47133 * 2 1 4 4 N 1.30250 * 125.62212 * 89.99435 * 3 2 1 5 5 C 1.34475 * 108.70048 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.16585 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47236 * 275.02992 * 6 5 4 8 8 C 1.34768 * 120.00166 * 180.02562 * 7 6 5 9 9 O 1.21591 * 120.00361 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00445 * 179.97438 * 8 7 6 11 11 C 1.39943 * 120.00484 * 174.72950 * 10 8 7 12 12 C 1.38955 * 120.03478 * 326.34751 * 11 10 8 13 13 C 1.38155 * 120.06838 * 180.02562 * 12 11 10 14 14 C 1.38176 * 120.13876 * 359.70055 * 13 12 11 15 15 C 1.38912 * 120.06629 * 0.55355 * 14 13 12 16 16 O 1.35747 * 120.03448 * 179.74558 * 15 14 13 17 17 C 1.34825 * 116.99973 * 173.82546 * 16 15 14 18 18 H 1.07996 * 120.00187 * 354.59146 * 17 16 15 19 19 C 1.38657 * 119.99760 * 174.59112 * 17 16 15 20 20 N 1.31562 * 120.00184 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99892 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46810 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47005 * 120.00058 * 21 19 17 24 24 H 1.48497 * 109.47165 * 240.00211 * 21 19 17 25 25 C 1.38708 * 120.03573 * 146.36795 * 11 10 8 26 26 C 1.34327 * 107.67031 * 0.26488 * 5 4 3 27 27 O 1.33965 * 125.61251 * 269.95168 * 3 2 1 28 28 H 1.09003 * 109.46839 * 60.00709 * 1 2 3 29 29 H 1.09001 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47463 * 300.00712 * 1 2 3 31 31 H 1.08994 * 109.47463 * 239.99288 * 2 1 3 32 32 H 1.09003 * 109.46839 * 119.99291 * 2 1 3 33 33 H 1.09000 * 109.47065 * 155.02612 * 6 5 4 34 34 H 1.09002 * 109.46936 * 35.02299 * 6 5 4 35 35 H 0.97003 * 119.99930 * 359.97438 * 7 6 5 36 36 H 0.97006 * 119.99843 * 354.73322 * 10 8 7 37 37 H 1.07998 * 119.96551 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.93284 * 180.02562 * 13 12 11 39 39 H 1.07993 * 119.96695 * 180.30197 * 14 13 12 40 40 H 0.97001 * 120.00059 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.07020 * 0.02562 * 25 11 10 42 42 H 1.08001 * 126.44425 * 179.73420 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2851 2.1361 1.0588 5 6 2.7146 3.3489 0.6674 6 6 3.1168 4.4847 1.5725 7 7 1.9259 5.2435 1.9627 8 6 2.0441 6.3121 2.7753 9 8 3.1390 6.6462 3.1851 10 7 0.9486 7.0105 3.1340 11 6 1.0553 8.0509 4.0637 12 6 1.9796 7.9674 5.0979 13 6 2.0852 8.9939 6.0165 14 6 1.2769 10.1092 5.9065 15 6 0.3473 10.1963 4.8779 16 8 -0.4500 11.2900 4.7735 17 6 -1.2388 11.3705 3.6831 18 1 -1.1546 10.6317 2.8999 19 6 -2.1583 12.4019 3.5673 20 7 -2.2606 13.3022 4.5211 21 14 -3.2508 12.5139 2.0561 22 1 -2.9414 11.3891 1.1372 23 1 -4.6753 12.4380 2.4685 24 1 -3.0045 13.8032 1.3617 25 6 0.2383 9.1665 3.9541 26 6 2.7153 3.3672 -0.6758 27 8 2.2933 2.1560 -1.0891 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.8095 5.1411 1.0458 34 1 3.6011 4.0851 2.4635 35 1 1.0524 4.9772 1.6356 36 1 0.0861 6.7919 2.7476 37 1 2.6161 7.0992 5.1837 38 1 2.8046 8.9269 6.8192 39 1 1.3652 10.9122 6.6232 40 1 -2.9036 14.0239 4.4399 41 1 -0.4814 9.2334 3.1517 42 1 3.0029 4.1959 -1.3059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425131289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:52 Heat of formation + Delta-G solvation = -3.649215 kcal Electronic energy + Delta-G solvation = -26441.760224 eV Core-core repulsion = 22389.771205 eV Total energy + Delta-G solvation = -4051.989019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.81616 -40.33433 -38.74862 -36.74519 -35.83574 -34.95800 -34.19753 -33.79895 -32.20974 -30.38846 -29.23724 -28.46396 -26.62375 -25.25922 -24.79889 -22.43146 -21.81599 -21.74793 -21.27081 -20.42575 -18.72597 -17.86016 -17.70418 -17.19754 -17.08733 -16.00090 -15.69111 -15.39702 -15.15001 -15.01857 -14.79880 -14.47293 -14.33896 -14.04198 -13.88111 -13.54671 -13.32847 -13.02033 -12.96250 -12.78674 -12.33917 -12.26356 -11.75285 -11.71561 -11.61019 -11.54501 -11.11747 -11.02887 -10.96923 -10.69911 -10.42210 -10.08734 -9.63317 -9.46251 -9.28024 -9.22166 -8.78605 -7.67337 -7.10246 -6.43244 -4.02658 0.95570 1.97669 2.12185 2.27741 2.44069 2.88085 3.11643 3.12570 3.18207 3.31703 3.45824 3.96840 4.22759 4.26587 4.36578 4.58682 4.59382 4.64583 4.80336 5.12480 5.14089 5.21966 5.24546 5.30842 5.31417 5.49557 5.54436 5.61589 5.73462 5.81375 6.04399 6.12191 6.22105 6.29231 6.32161 6.58115 6.81938 7.04147 7.14024 7.29278 7.30004 7.37361 7.46225 7.86344 8.00616 8.02853 8.62754 9.02399 9.73843 10.75029 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.002248 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.887129 B =12451.865178 C =13851.561611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C 0.193 3.807 4 N -0.468 5.468 5 C -0.033 4.033 6 C 0.224 3.776 7 N -0.743 5.743 8 C 0.706 3.294 9 O -0.569 6.569 10 N -0.681 5.681 11 C 0.199 3.801 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.390 4.390 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.258 4.258 26 C -0.049 4.049 27 O -0.201 6.201 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.269 0.731 41 H 0.129 0.871 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 -24.886 -11.579 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.197 5.197 5 C -0.153 4.153 6 C 0.100 3.900 7 N -0.400 5.400 8 C 0.406 3.594 9 O -0.445 6.445 10 N -0.328 5.328 11 C 0.105 3.895 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.107 0.893 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.280 4.280 26 C -0.121 4.121 27 O -0.087 6.087 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.237 0.763 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.713 -24.449 -10.450 27.423 hybrid contribution -1.310 0.145 -1.977 2.376 sum 5.403 -24.304 -12.427 27.827 Atomic orbital electron populations 1.21793 0.92889 1.03162 1.03095 1.20093 0.96998 0.84095 1.05289 1.26427 0.99520 0.97002 0.78497 1.70384 1.15894 1.03286 1.30178 1.21726 1.06169 0.94662 0.92736 1.19218 0.86650 0.87243 0.96892 1.45052 1.10511 1.30820 1.53617 1.15817 0.84645 0.79688 0.79239 1.90960 1.25015 1.69876 1.58675 1.42568 1.09848 1.34830 1.45526 1.17172 0.97392 0.86513 0.88399 1.20572 1.03729 1.01681 0.96522 1.20530 0.97361 0.92714 0.97566 1.20242 1.00064 1.00584 1.01277 1.19066 0.90391 0.86504 0.92569 1.84018 1.47351 1.34475 1.42240 1.21306 1.16512 1.13058 0.95777 0.89258 1.25273 0.97194 0.95211 0.98883 1.70049 1.34470 1.13054 1.32210 0.85666 0.79327 0.78635 0.79869 1.19260 1.20197 1.20170 1.20780 1.07468 0.94424 1.05293 1.24970 1.03670 0.87308 0.96131 1.84481 1.63723 1.22628 1.37841 0.92119 0.90757 0.91596 0.88828 0.87507 0.89601 0.89632 0.76978 0.76314 0.86191 0.86623 0.86408 0.92115 0.85324 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.03 -0.13 6.56 -27.88 -0.18 -0.31 16 3 C 0.19 1.61 7.60 -12.95 -0.10 1.51 16 4 N -0.47 -4.88 11.29 -7.36 -0.08 -4.97 16 5 C -0.03 -0.31 6.47 -82.81 -0.54 -0.85 16 6 C 0.22 2.31 6.21 -5.19 -0.03 2.28 16 7 N -0.74 -8.39 5.55 -66.41 -0.37 -8.76 16 8 C 0.71 10.93 8.30 -86.93 -0.72 10.21 16 9 O -0.57 -10.91 14.05 5.29 0.07 -10.84 16 10 N -0.68 -10.64 5.35 -14.24 -0.08 -10.72 16 11 C 0.20 3.90 6.27 -83.72 -0.52 3.38 16 12 C -0.20 -4.04 8.65 -39.35 -0.34 -4.38 16 13 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 14 C -0.20 -4.41 9.99 -39.35 -0.39 -4.80 16 15 C 0.17 4.14 6.64 -39.13 -0.26 3.88 16 16 O -0.18 -5.08 9.76 0.07 0.00 -5.07 16 17 C -0.39 -10.86 9.44 30.89 0.29 -10.57 16 18 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 19 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 21 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.26 -5.66 9.04 -39.21 -0.35 -6.01 16 26 C -0.05 -0.37 12.08 29.35 0.35 -0.01 16 27 O -0.20 -1.68 10.78 5.35 0.06 -1.62 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 3.67 8.48 -40.82 -0.35 3.32 16 36 H 0.40 4.99 8.83 -40.82 -0.36 4.62 16 37 H 0.12 2.35 6.43 -52.49 -0.34 2.02 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 42 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -35.62 368.24 -7.02 -42.64 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.99 Total: 9.56 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.92 Total: -6.61 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.23 Total: -48.98 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.13 Total: -17.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.62 -7.02 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425131289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.988 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds