Wall clock time and date at job start Tue Mar 31 2020 16:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47133 * 2 1 4 4 N 1.30250 * 125.62212 * 89.99435 * 3 2 1 5 5 C 1.34475 * 108.70048 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.16585 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47236 * 275.02992 * 6 5 4 8 8 C 1.34768 * 120.00166 * 180.02562 * 7 6 5 9 9 O 1.21591 * 120.00361 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00445 * 179.97438 * 8 7 6 11 11 C 1.39943 * 120.00484 * 174.72950 * 10 8 7 12 12 C 1.38955 * 120.03478 * 326.34751 * 11 10 8 13 13 C 1.38155 * 120.06838 * 180.02562 * 12 11 10 14 14 C 1.38176 * 120.13876 * 359.70055 * 13 12 11 15 15 C 1.38912 * 120.06629 * 0.55355 * 14 13 12 16 16 O 1.35747 * 120.03448 * 179.74558 * 15 14 13 17 17 C 1.34825 * 116.99973 * 173.82546 * 16 15 14 18 18 H 1.07996 * 120.00187 * 354.59146 * 17 16 15 19 19 C 1.38657 * 119.99760 * 174.59112 * 17 16 15 20 20 N 1.31562 * 120.00184 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99892 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46810 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47005 * 120.00058 * 21 19 17 24 24 H 1.48497 * 109.47165 * 240.00211 * 21 19 17 25 25 C 1.38708 * 120.03573 * 146.36795 * 11 10 8 26 26 C 1.34327 * 107.67031 * 0.26488 * 5 4 3 27 27 O 1.33965 * 125.61251 * 269.95168 * 3 2 1 28 28 H 1.09003 * 109.46839 * 60.00709 * 1 2 3 29 29 H 1.09001 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47463 * 300.00712 * 1 2 3 31 31 H 1.08994 * 109.47463 * 239.99288 * 2 1 3 32 32 H 1.09003 * 109.46839 * 119.99291 * 2 1 3 33 33 H 1.09000 * 109.47065 * 155.02612 * 6 5 4 34 34 H 1.09002 * 109.46936 * 35.02299 * 6 5 4 35 35 H 0.97003 * 119.99930 * 359.97438 * 7 6 5 36 36 H 0.97006 * 119.99843 * 354.73322 * 10 8 7 37 37 H 1.07998 * 119.96551 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.93284 * 180.02562 * 13 12 11 39 39 H 1.07993 * 119.96695 * 180.30197 * 14 13 12 40 40 H 0.97001 * 120.00059 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.07020 * 0.02562 * 25 11 10 42 42 H 1.08001 * 126.44425 * 179.73420 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2851 2.1361 1.0588 5 6 2.7146 3.3489 0.6674 6 6 3.1168 4.4847 1.5725 7 7 1.9259 5.2435 1.9627 8 6 2.0441 6.3121 2.7753 9 8 3.1390 6.6462 3.1851 10 7 0.9486 7.0105 3.1340 11 6 1.0553 8.0509 4.0637 12 6 1.9796 7.9674 5.0979 13 6 2.0852 8.9939 6.0165 14 6 1.2769 10.1092 5.9065 15 6 0.3473 10.1963 4.8779 16 8 -0.4500 11.2900 4.7735 17 6 -1.2388 11.3705 3.6831 18 1 -1.1546 10.6317 2.8999 19 6 -2.1583 12.4019 3.5673 20 7 -2.2606 13.3022 4.5211 21 14 -3.2508 12.5139 2.0561 22 1 -2.9414 11.3891 1.1372 23 1 -4.6753 12.4380 2.4685 24 1 -3.0045 13.8032 1.3617 25 6 0.2383 9.1665 3.9541 26 6 2.7153 3.3672 -0.6758 27 8 2.2933 2.1560 -1.0891 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.8095 5.1411 1.0458 34 1 3.6011 4.0851 2.4635 35 1 1.0524 4.9772 1.6356 36 1 0.0861 6.7919 2.7476 37 1 2.6161 7.0992 5.1837 38 1 2.8046 8.9269 6.8192 39 1 1.3652 10.9122 6.6232 40 1 -2.9036 14.0239 4.4399 41 1 -0.4814 9.2334 3.1517 42 1 3.0029 4.1959 -1.3059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425131289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:51 Heat of formation + Delta-G solvation = -31.086178 kcal Electronic energy + Delta-G solvation = -26442.949980 eV Core-core repulsion = 22389.771205 eV Total energy + Delta-G solvation = -4053.178775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.43991 -41.70388 -40.46061 -38.34414 -36.81465 -35.65946 -35.56456 -34.56566 -34.19000 -31.34554 -30.72387 -29.97593 -27.60186 -27.16232 -25.24737 -23.75593 -23.47655 -22.55488 -21.91956 -21.81962 -20.17819 -19.42809 -19.17342 -18.11451 -17.79860 -17.30967 -16.97987 -16.63792 -16.28498 -16.13656 -15.94271 -15.70972 -15.62404 -15.45040 -15.25665 -14.80550 -14.55916 -14.24859 -13.97473 -13.65763 -13.52447 -13.50511 -13.21341 -12.77824 -12.70510 -12.61539 -12.38487 -12.31290 -12.08073 -12.05090 -11.64200 -11.56981 -11.30905 -11.17375 -10.72618 -10.28005 -9.90778 -9.32287 -8.83341 -8.45230 -6.13695 0.34333 0.46548 0.72151 1.20697 1.36474 1.45006 1.54649 1.73935 1.84325 2.01169 2.18668 2.85873 2.87816 3.16044 3.20040 3.51259 3.57488 3.84998 4.12986 4.17841 4.24918 4.34432 4.36809 4.45899 4.51810 4.57769 4.65098 4.73394 4.76013 4.86514 4.96776 5.03481 5.06449 5.12679 5.14983 5.23979 5.33415 5.35169 5.48665 5.68985 5.70295 5.90178 6.03363 6.21579 6.67437 6.86442 6.99276 7.38647 7.79383 8.78037 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.002248 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.887129 B =12451.865178 C =13851.561611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.027 4.027 3 C 0.192 3.808 4 N -0.502 5.502 5 C -0.055 4.055 6 C 0.228 3.772 7 N -0.722 5.722 8 C 0.706 3.294 9 O -0.606 6.606 10 N -0.673 5.673 11 C 0.207 3.793 12 C -0.200 4.200 13 C -0.051 4.051 14 C -0.214 4.214 15 C 0.135 3.865 16 O -0.226 6.226 17 C -0.411 4.411 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.250 1.250 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.260 4.260 26 C -0.033 4.033 27 O -0.205 6.205 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.419 0.581 37 H 0.129 0.871 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.129 0.871 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -27.463 -13.792 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.016 4.016 4 N -0.232 5.232 5 C -0.174 4.174 6 C 0.104 3.896 7 N -0.379 5.379 8 C 0.407 3.593 9 O -0.485 6.485 10 N -0.321 5.321 11 C 0.111 3.889 12 C -0.221 4.221 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.084 3.916 16 O -0.132 6.132 17 C -0.487 4.487 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.282 4.282 26 C -0.104 4.104 27 O -0.091 6.091 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.256 0.744 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.972 -27.115 -12.692 30.740 hybrid contribution -1.185 0.686 -1.247 1.851 sum 5.788 -26.430 -13.938 30.435 Atomic orbital electron populations 1.21769 0.92527 1.04148 1.02094 1.20316 0.97162 0.82373 1.06648 1.27100 0.98591 0.97892 0.78021 1.70349 1.17241 1.04111 1.31474 1.21598 1.08069 0.94380 0.93376 1.19204 0.86106 0.87601 0.96642 1.44922 1.11751 1.29197 1.52007 1.15899 0.83806 0.80192 0.79432 1.90935 1.26303 1.71017 1.60214 1.42422 1.11001 1.33838 1.44878 1.17166 0.96242 0.86620 0.88846 1.20862 1.03183 1.01844 0.96163 1.20910 0.96783 0.91166 0.98053 1.20471 1.00212 1.01757 1.00986 1.19581 0.90927 0.86741 0.94352 1.83985 1.49137 1.36823 1.43298 1.21818 1.16772 1.13753 0.96335 0.88079 1.26590 0.98540 0.94427 1.02521 1.70195 1.36153 1.14357 1.35068 0.84526 0.76918 0.79211 0.75517 1.17278 1.19363 1.19611 1.20790 1.07998 0.94633 1.04800 1.25538 1.01566 0.87527 0.95818 1.84514 1.63721 1.22944 1.37952 0.92391 0.88803 0.93244 0.86633 0.86951 0.88551 0.91197 0.75508 0.74379 0.85328 0.82849 0.86210 0.91862 0.85295 0.73254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 71.98 0.71 -0.28 16 2 C -0.03 -0.20 6.56 29.85 0.20 -0.01 16 3 C 0.19 2.87 7.60 88.34 0.67 3.54 16 4 N -0.50 -9.85 11.29 -291.99 -3.30 -13.15 16 5 C -0.06 -0.95 6.47 41.26 0.27 -0.68 16 6 C 0.23 4.35 6.21 85.63 0.53 4.88 16 7 N -0.72 -14.92 5.55 -482.30 -2.68 -17.59 16 8 C 0.71 20.60 8.30 179.06 1.49 22.08 16 9 O -0.61 -22.30 14.05 -4.00 -0.06 -22.36 16 10 N -0.67 -19.83 5.35 -317.24 -1.70 -21.53 16 11 C 0.21 7.86 6.27 38.13 0.24 8.10 16 12 C -0.20 -7.56 8.65 22.42 0.19 -7.36 16 13 C -0.05 -1.88 10.03 22.24 0.22 -1.65 16 14 C -0.21 -9.43 9.99 22.42 0.22 -9.20 16 15 C 0.14 6.81 6.64 22.56 0.15 6.96 16 16 O -0.23 -13.54 9.76 -22.66 -0.22 -13.77 16 17 C -0.41 -23.58 9.44 67.92 0.64 -22.94 16 18 H 0.10 5.30 5.30 -2.91 -0.02 5.28 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 20 N -0.92 -56.07 13.67 21.61 0.30 -55.77 16 21 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 25 C -0.26 -11.45 9.04 22.51 0.20 -11.25 16 26 C -0.03 -0.41 12.08 66.93 0.81 0.40 16 27 O -0.21 -2.97 10.78 -3.78 -0.04 -3.01 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 6.63 8.48 -92.71 -0.79 5.85 16 36 H 0.42 9.51 8.83 -92.70 -0.82 8.69 16 37 H 0.13 4.75 6.43 -2.91 -0.02 4.73 16 38 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.13 5.56 5.72 -2.91 -0.02 5.54 16 42 H 0.25 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -80.34 368.24 0.83 -79.51 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.51 Total: 31.77 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 7.01 Total: -8.25 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -7.38 Total: -108.04 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.32 Total: -39.13 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -80.34 0.83 -79.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425131289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.422 kcal (2) G-P(sol) polarization free energy of solvation -80.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds