Wall clock time and date at job start Tue Mar 31 2020 16:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30269 * 126.28220 * 2 1 4 4 N 1.28661 * 109.38412 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37996 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.28342 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47144 * 90.02073 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 O 1.34363 * 107.43660 * 0.24265 * 5 4 3 28 28 H 1.09001 * 109.47748 * 89.97364 * 1 2 3 29 29 H 1.09000 * 109.46874 * 209.97380 * 1 2 3 30 30 H 1.09000 * 109.47171 * 329.97185 * 1 2 3 31 31 H 1.09002 * 109.46571 * 330.02309 * 6 5 4 32 32 H 1.08998 * 109.47190 * 210.02756 * 6 5 4 33 33 H 1.09008 * 109.46644 * 60.00215 * 7 6 5 34 34 H 1.08998 * 109.47635 * 300.00411 * 7 6 5 35 35 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 37 37 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 38 38 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2422 -1.7489 1.4391 8 6 6.4941 -2.5878 1.4376 9 8 6.9975 -2.9241 0.3868 10 7 7.0543 -2.9644 2.6042 11 6 8.2716 -3.7794 2.6029 12 6 8.6890 -4.0614 4.0232 13 6 9.5474 -3.1951 4.6760 14 6 9.9330 -3.4507 5.9791 15 6 9.4568 -4.5690 6.6350 16 6 8.5995 -5.4436 5.9806 17 8 8.1345 -6.5467 6.6206 18 6 8.6362 -6.8004 7.8461 19 1 9.3121 -6.0968 8.3092 20 6 8.2844 -7.9648 8.5118 21 7 7.4615 -8.8220 7.9475 22 14 8.9801 -8.3166 10.2093 23 1 8.5783 -7.2341 11.1431 24 1 8.4537 -9.6154 10.7006 25 1 10.4618 -8.3804 10.1336 26 6 8.2145 -5.1844 4.6714 27 8 2.3021 -1.0831 -0.0069 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 5.6144 -0.9258 -0.5165 32 1 4.6243 -2.4049 -0.5176 33 1 4.4453 -2.2869 1.9528 34 1 5.4355 -0.8078 1.9539 35 1 6.6514 -2.6957 3.4447 36 1 9.0685 -3.2412 2.0896 37 1 8.0783 -4.7203 2.0877 38 1 9.9171 -2.3173 4.1669 39 1 10.6036 -2.7727 6.4859 40 1 9.7543 -4.7654 7.6545 41 1 7.2156 -9.6367 8.4131 42 1 7.5449 -5.8608 4.1609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433696453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:14 Heat of formation + Delta-G solvation = -9.843435 kcal Electronic energy + Delta-G solvation = -25930.360778 eV Core-core repulsion = 21878.103158 eV Total energy + Delta-G solvation = -4052.257620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.56909 -39.95807 -39.08913 -36.90804 -36.49998 -34.95628 -34.52927 -32.50741 -32.37065 -30.91150 -29.26523 -28.62661 -26.54047 -25.46825 -24.66618 -23.03201 -22.38792 -21.76506 -20.88189 -20.48940 -18.17340 -17.73685 -17.52068 -17.22781 -16.83691 -16.09467 -15.86913 -15.30328 -15.10426 -14.94884 -14.71530 -14.43238 -13.95233 -13.89268 -13.70944 -13.52335 -13.42558 -13.19259 -12.82734 -12.73960 -12.64113 -12.44717 -12.23375 -12.16881 -11.75545 -11.68004 -11.42714 -11.24439 -10.97518 -10.88088 -10.76176 -10.53232 -10.14348 -9.78133 -9.46342 -9.10432 -8.92906 -8.30222 -7.38218 -6.53180 -4.12893 0.76858 1.80313 1.90031 2.02514 2.21649 2.49628 3.06966 3.08414 3.11809 3.16966 3.53123 3.89074 4.00635 4.33011 4.39627 4.44669 4.68769 4.74952 4.77035 4.87484 4.89850 5.01384 5.04484 5.09944 5.19226 5.22347 5.37523 5.43497 5.48801 5.53123 5.68189 5.78913 5.85291 6.02345 6.19700 6.35622 6.50050 6.76134 6.94355 7.12524 7.22102 7.30479 7.42558 7.65932 7.90676 7.95867 8.08711 8.92022 9.59949 10.64374 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.001861 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.558440 B =15039.759308 C =16037.183041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.159 3.841 3 N -0.290 5.290 4 N -0.284 5.284 5 C 0.168 3.832 6 C -0.008 4.008 7 C -0.141 4.141 8 C 0.516 3.484 9 O -0.545 6.545 10 N -0.718 5.718 11 C 0.167 3.833 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.171 4.171 27 O -0.224 6.224 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 14.364 -12.003 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 N -0.138 5.138 4 N -0.130 5.130 5 C -0.043 4.043 6 C -0.046 4.046 7 C -0.181 4.181 8 C 0.302 3.698 9 O -0.422 6.422 10 N -0.369 5.369 11 C 0.045 3.955 12 C -0.075 4.075 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.470 4.470 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.191 4.191 27 O -0.103 6.103 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.938 14.929 -12.767 21.581 hybrid contribution -0.148 -1.244 1.449 1.916 sum -9.085 13.685 -11.318 19.948 Atomic orbital electron populations 1.20371 0.80131 1.05851 1.05290 1.28061 0.97927 0.79640 0.99554 1.74407 0.96099 1.25655 1.17608 1.74419 1.12219 1.09200 1.17186 1.28036 0.85228 0.91663 0.99357 1.19925 0.87450 0.99188 0.98085 1.21646 0.97187 1.02017 0.97296 1.20278 0.85253 0.80284 0.83959 1.90723 1.64053 1.56367 1.31106 1.46129 1.28386 1.53766 1.08593 1.20181 0.86090 0.95315 0.93923 1.19255 0.98753 0.95373 0.94149 1.20486 1.04057 1.01032 0.95900 1.20754 0.98065 0.96239 0.94343 1.21247 1.04199 0.97312 1.01720 1.19328 0.91703 0.87992 0.91399 1.83979 1.57099 1.36481 1.30317 1.21278 1.28720 1.06272 0.90757 0.89067 1.25300 0.96534 0.94622 0.99998 1.70020 1.31363 1.10072 1.38053 0.85774 0.79173 0.78269 0.80193 1.19468 1.20226 1.19447 1.20081 1.06069 0.99648 0.93300 1.84804 1.17616 1.38330 1.69572 0.88281 0.88741 0.87474 0.86074 0.87423 0.88064 0.87704 0.76037 0.90766 0.90710 0.87461 0.87246 0.85450 0.91862 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.16 16 2 C 0.16 1.41 8.48 -12.94 -0.11 1.30 16 3 N -0.29 -3.44 12.22 32.55 0.40 -3.04 16 4 N -0.28 -3.51 12.22 32.55 0.40 -3.11 16 5 C 0.17 1.71 7.73 -12.94 -0.10 1.61 16 6 C -0.01 -0.06 5.13 -27.88 -0.14 -0.21 16 7 C -0.14 -1.13 5.68 -27.88 -0.16 -1.29 16 8 C 0.52 5.83 7.83 -10.98 -0.09 5.75 16 9 O -0.54 -7.93 15.98 5.56 0.09 -7.85 16 10 N -0.72 -8.25 5.55 -61.47 -0.34 -8.59 16 11 C 0.17 2.27 5.80 -5.19 -0.03 2.24 16 12 C -0.07 -1.20 5.25 -104.65 -0.55 -1.74 16 13 C -0.20 -3.06 9.70 -39.53 -0.38 -3.44 16 14 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 15 C -0.23 -4.58 9.17 -39.40 -0.36 -4.94 16 16 C 0.15 3.40 6.65 -39.11 -0.26 3.14 16 17 O -0.18 -4.80 9.76 0.05 0.00 -4.80 16 18 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 19 H 0.09 2.26 5.21 -52.49 -0.27 1.98 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 22 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 C -0.17 -3.33 9.65 -39.39 -0.38 -3.71 16 27 O -0.22 -2.18 10.87 5.37 0.06 -2.12 16 28 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.09 8.46 -40.82 -0.35 3.75 16 36 H 0.07 0.97 8.09 -51.93 -0.42 0.56 16 37 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -33.99 372.61 -5.54 -39.54 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.11 Total: 5.46 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.38 Total: -12.16 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 1.21 Total: -38.55 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.15 Total: -14.77 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.99 -5.54 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433696453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.694 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds