Wall clock time and date at job start Tue Mar 31 2020 16:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30269 * 126.28220 * 2 1 4 4 N 1.28661 * 109.38412 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37996 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.28342 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47144 * 90.02073 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 O 1.34363 * 107.43660 * 0.24265 * 5 4 3 28 28 H 1.09001 * 109.47748 * 89.97364 * 1 2 3 29 29 H 1.09000 * 109.46874 * 209.97380 * 1 2 3 30 30 H 1.09000 * 109.47171 * 329.97185 * 1 2 3 31 31 H 1.09002 * 109.46571 * 330.02309 * 6 5 4 32 32 H 1.08998 * 109.47190 * 210.02756 * 6 5 4 33 33 H 1.09008 * 109.46644 * 60.00215 * 7 6 5 34 34 H 1.08998 * 109.47635 * 300.00411 * 7 6 5 35 35 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 37 37 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 38 38 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2422 -1.7489 1.4391 8 6 6.4941 -2.5878 1.4376 9 8 6.9975 -2.9241 0.3868 10 7 7.0543 -2.9644 2.6042 11 6 8.2716 -3.7794 2.6029 12 6 8.6890 -4.0614 4.0232 13 6 9.5474 -3.1951 4.6760 14 6 9.9330 -3.4507 5.9791 15 6 9.4568 -4.5690 6.6350 16 6 8.5995 -5.4436 5.9806 17 8 8.1345 -6.5467 6.6206 18 6 8.6362 -6.8004 7.8461 19 1 9.3121 -6.0968 8.3092 20 6 8.2844 -7.9648 8.5118 21 7 7.4615 -8.8220 7.9475 22 14 8.9801 -8.3166 10.2093 23 1 8.5783 -7.2341 11.1431 24 1 8.4537 -9.6154 10.7006 25 1 10.4618 -8.3804 10.1336 26 6 8.2145 -5.1844 4.6714 27 8 2.3021 -1.0831 -0.0069 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 5.6144 -0.9258 -0.5165 32 1 4.6243 -2.4049 -0.5176 33 1 4.4453 -2.2869 1.9528 34 1 5.4355 -0.8078 1.9539 35 1 6.6514 -2.6957 3.4447 36 1 9.0685 -3.2412 2.0896 37 1 8.0783 -4.7203 2.0877 38 1 9.9171 -2.3173 4.1669 39 1 10.6036 -2.7727 6.4859 40 1 9.7543 -4.7654 7.6545 41 1 7.2156 -9.6367 8.4131 42 1 7.5449 -5.8608 4.1609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433696453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:13 Heat of formation + Delta-G solvation = -37.150475 kcal Electronic energy + Delta-G solvation = -25931.544900 eV Core-core repulsion = 21878.103158 eV Total energy + Delta-G solvation = -4053.441742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.31039 -41.08576 -40.55713 -38.48680 -37.26434 -35.90435 -35.46839 -34.28828 -33.11709 -32.18467 -30.78924 -29.33806 -27.72168 -27.13163 -25.72609 -23.71176 -23.28921 -23.13463 -22.39373 -21.41561 -19.63564 -18.96858 -18.60695 -18.27155 -17.80796 -16.99662 -16.96120 -16.67920 -16.35196 -16.11668 -15.86380 -15.58875 -15.50465 -15.10706 -14.59165 -14.51061 -14.27862 -14.08802 -13.93162 -13.65427 -13.57823 -13.52585 -13.29841 -13.28787 -13.00621 -12.96458 -12.52565 -12.40011 -12.38290 -12.26909 -12.14641 -11.96372 -11.22954 -11.11071 -10.80121 -10.53563 -10.12299 -9.75281 -9.03297 -8.47151 -6.15609 0.06982 0.38913 0.70690 1.21145 1.26203 1.35672 1.45719 1.51469 1.59351 2.17264 2.22908 2.79932 2.90442 3.16114 3.39072 3.41055 3.61047 3.78552 3.82161 3.98970 4.09712 4.14411 4.29283 4.31649 4.37702 4.43283 4.53221 4.54690 4.56985 4.70398 4.72452 4.74644 4.78477 4.88281 5.02215 5.05765 5.11609 5.26184 5.36180 5.62543 5.70736 5.72091 6.01370 6.16882 6.50683 6.97651 7.17634 7.20811 7.77746 8.75552 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.001861 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.558440 B =15039.759308 C =16037.183041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.170 3.830 3 N -0.331 5.331 4 N -0.315 5.315 5 C 0.171 3.829 6 C -0.003 4.003 7 C -0.129 4.129 8 C 0.520 3.480 9 O -0.577 6.577 10 N -0.714 5.714 11 C 0.173 3.827 12 C -0.059 4.059 13 C -0.169 4.169 14 C -0.071 4.071 15 C -0.235 4.235 16 C 0.111 3.889 17 O -0.232 6.232 18 C -0.413 4.413 19 H 0.103 0.897 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.017 2.983 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.181 4.181 27 O -0.229 6.229 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 16.792 -12.208 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 N -0.177 5.177 4 N -0.161 5.161 5 C -0.041 4.041 6 C -0.042 4.042 7 C -0.170 4.170 8 C 0.308 3.692 9 O -0.457 6.457 10 N -0.366 5.366 11 C 0.050 3.950 12 C -0.060 4.060 13 C -0.188 4.188 14 C -0.089 4.089 15 C -0.255 4.255 16 C 0.060 3.940 17 O -0.138 6.138 18 C -0.489 4.489 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.836 3.164 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.183 1.183 26 C -0.200 4.200 27 O -0.109 6.109 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.250 0.750 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.552 17.438 -12.989 23.365 hybrid contribution -0.253 -1.724 1.234 2.135 sum -8.806 15.714 -11.755 21.509 Atomic orbital electron populations 1.20730 0.76626 1.07345 1.06977 1.29068 0.99453 0.78748 0.96832 1.74345 0.96362 1.27087 1.19937 1.74339 1.12960 1.10310 1.18441 1.28218 0.85779 0.91281 0.98839 1.19931 0.86781 0.99071 0.98379 1.21589 0.95829 1.02166 0.97409 1.20712 0.85619 0.79773 0.83100 1.90718 1.65127 1.57675 1.32208 1.46026 1.27856 1.53401 1.09298 1.20051 0.87421 0.95656 0.91874 1.19470 0.97669 0.93783 0.95051 1.21013 1.01430 1.01142 0.95176 1.21165 0.97680 0.95200 0.94820 1.21374 1.04133 0.98278 1.01697 1.19884 0.93437 0.87895 0.92742 1.83944 1.59639 1.39134 1.31115 1.21770 1.28999 1.06905 0.91222 0.87971 1.26571 0.96855 0.94174 1.04480 1.70171 1.34173 1.11087 1.40381 0.84666 0.78722 0.78332 0.74644 1.18052 1.19836 1.18254 1.20236 1.06380 1.00925 0.92504 1.84829 1.17615 1.38689 1.69800 0.86278 0.86842 0.86279 0.86188 0.86977 0.86453 0.86238 0.75034 0.89325 0.91641 0.83365 0.83477 0.86271 0.91878 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 71.24 0.75 0.46 16 2 C 0.17 2.78 8.48 88.34 0.75 3.53 16 3 N -0.33 -7.65 12.22 -165.50 -2.02 -9.67 16 4 N -0.31 -7.62 12.22 -165.50 -2.02 -9.64 16 5 C 0.17 3.29 7.73 88.34 0.68 3.97 16 6 C 0.00 -0.04 5.13 29.85 0.15 0.11 16 7 C -0.13 -1.79 5.68 29.85 0.17 -1.62 16 8 C 0.52 10.64 7.83 87.66 0.69 11.32 16 9 O -0.58 -15.89 15.98 -3.01 -0.05 -15.94 16 10 N -0.71 -14.63 5.55 -466.79 -2.59 -17.22 16 11 C 0.17 4.26 5.80 85.63 0.50 4.76 16 12 C -0.06 -1.76 5.25 -19.88 -0.10 -1.87 16 13 C -0.17 -4.55 9.70 22.30 0.22 -4.34 16 14 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 15 C -0.24 -9.48 9.17 22.39 0.21 -9.28 16 16 C 0.11 5.19 6.65 22.58 0.15 5.34 16 17 O -0.23 -13.45 9.76 -22.74 -0.22 -13.68 16 18 C -0.41 -23.30 9.49 67.92 0.64 -22.66 16 19 H 0.10 5.24 5.21 -2.91 -0.02 5.22 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 21 N -0.92 -55.47 13.67 21.61 0.30 -55.17 16 22 Si 1.02 41.75 29.55 68.60 2.03 43.77 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 C -0.18 -7.10 9.65 22.39 0.22 -6.88 16 27 O -0.23 -4.16 10.87 -3.69 -0.04 -4.20 16 28 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.12 1.88 8.10 -2.39 -0.02 1.86 16 32 H 0.11 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.41 7.22 8.46 -92.71 -0.78 6.43 16 36 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -79.54 372.61 1.37 -78.17 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.29 Total: 23.46 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.70 Total: -19.89 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -6.34 Total: -91.70 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.31 Total: -33.81 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -79.54 1.37 -78.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433696453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.020 kcal (2) G-P(sol) polarization free energy of solvation -79.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds