Wall clock time and date at job start Tue Mar 31 2020 15:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 116.99934 * 2 1 4 4 C 1.38572 * 120.12189 * 359.97436 * 3 2 1 5 5 C 1.38228 * 120.23434 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.48988 * 359.97438 * 5 4 3 7 7 C 1.38526 * 120.23369 * 359.76000 * 6 5 4 8 8 O 1.35664 * 120.12103 * 180.25917 * 7 6 5 9 9 C 1.40243 * 120.12317 * 179.97438 * 3 2 1 10 10 C 1.47215 * 120.23430 * 359.97438 * 9 3 2 11 11 O 1.21635 * 120.00001 * 89.99903 * 10 9 3 12 12 N 1.34779 * 119.99378 * 269.99434 * 10 9 3 13 13 C 1.40106 * 119.99507 * 179.97438 * 12 10 9 14 14 C 1.40424 * 125.97626 * 0.27536 * 13 12 10 15 15 C 1.35232 * 107.86568 * 180.16557 * 14 13 12 16 16 C 1.50703 * 126.06766 * 179.84878 * 15 14 13 17 17 N 1.34973 * 107.86541 * 359.58490 * 15 14 13 18 18 C 1.46497 * 125.97532 * 180.23120 * 17 15 14 19 19 C 1.50694 * 109.47559 * 89.99685 * 18 17 15 20 20 H 1.08005 * 119.99538 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00366 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46943 * 59.99938 * 23 21 19 25 25 H 1.48494 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47297 * 300.00162 * 23 21 19 27 27 N 1.31229 * 125.97408 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47406 * 300.00369 * 1 2 3 30 30 H 1.09009 * 109.46876 * 60.00556 * 1 2 3 31 31 H 1.07989 * 119.88144 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.75285 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.88366 * 179.97438 * 6 5 4 34 34 H 0.96700 * 114.00047 * 270.25248 * 8 7 6 35 35 H 0.96995 * 120.00843 * 0.02562 * 12 10 9 36 36 H 1.07998 * 126.06357 * 0.02562 * 14 13 12 37 37 H 1.09002 * 109.47152 * 269.68932 * 16 15 14 38 38 H 1.09001 * 109.46980 * 149.69032 * 16 15 14 39 39 H 1.09004 * 109.47113 * 29.69013 * 16 15 14 40 40 H 1.09005 * 109.46929 * 209.99904 * 18 17 15 41 41 H 1.09004 * 109.46704 * 329.99710 * 18 17 15 42 42 H 0.96998 * 120.00028 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3724 -0.0005 5 6 1.9178 3.6053 -0.0011 6 6 3.2977 3.6922 -0.0005 7 6 4.0690 2.5416 0.0055 8 8 5.4228 2.6295 0.0113 9 6 3.4452 1.2851 0.0005 10 6 4.2547 0.0555 0.0017 11 8 4.5896 -0.4532 -1.0512 12 7 4.6248 -0.5064 1.1695 13 6 5.3948 -1.6770 1.1706 14 6 5.8529 -2.3641 0.0349 15 6 6.5543 -3.4408 0.4563 16 6 7.2257 -4.4626 -0.4248 17 7 6.5514 -3.4345 1.8060 18 6 7.2005 -4.4214 2.6725 19 6 8.6105 -3.9798 2.9686 20 1 8.9855 -3.0560 2.5532 21 6 9.4215 -4.7544 3.7707 22 7 8.9647 -5.8789 4.2770 23 14 11.1691 -4.2065 4.1383 24 1 11.1412 -2.8888 4.8224 25 1 11.8271 -5.2069 5.0166 26 1 11.9286 -4.0886 2.8677 27 7 5.8186 -2.3198 2.2332 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2142 2.3160 -0.0005 32 1 1.3238 4.5074 -0.0011 33 1 3.7759 4.6605 -0.0014 34 1 5.8190 2.6569 -0.8704 35 1 4.3576 -0.1010 2.0091 36 1 5.6745 -2.0838 -0.9927 37 1 6.5290 -5.2737 -0.6365 38 1 8.1032 -4.8610 0.0845 39 1 7.5305 -3.9921 -1.3597 40 1 6.6434 -4.5080 3.6054 41 1 7.2206 -5.3886 2.1702 42 1 9.5353 -6.4240 4.8409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433872793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:48 Heat of formation + Delta-G solvation = -3.951508 kcal Electronic energy + Delta-G solvation = -27633.928508 eV Core-core repulsion = 23581.926381 eV Total energy + Delta-G solvation = -4052.002127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.08431 -40.41264 -39.03450 -38.46941 -36.32480 -34.71918 -33.33748 -31.80445 -31.14227 -30.60263 -29.78704 -27.71524 -26.67616 -26.27645 -24.50000 -22.84236 -22.50478 -21.36500 -19.71045 -19.55066 -18.91794 -17.48672 -17.01602 -16.96796 -16.63488 -16.30801 -15.96973 -15.45904 -15.27034 -15.05197 -14.79650 -14.44392 -14.27180 -13.91936 -13.72339 -13.06480 -12.83716 -12.73368 -12.43720 -12.42540 -12.27340 -12.07528 -11.76523 -11.60797 -11.39728 -11.36922 -11.18554 -11.01354 -10.78679 -10.39798 -10.19680 -9.90696 -9.60704 -9.48408 -9.12989 -8.63336 -8.60813 -7.86592 -7.38863 -6.22115 -4.29734 0.64629 0.93742 2.33919 2.75845 2.84648 2.96606 3.18912 3.26241 3.29636 3.34686 3.79033 3.88077 3.96205 4.32677 4.38388 4.58836 4.68831 4.77009 4.81057 4.90407 5.03976 5.11304 5.17424 5.31134 5.50741 5.73450 5.78140 5.86985 5.96000 6.00715 6.11308 6.14420 6.31060 6.52646 6.61745 6.78554 6.91771 6.97927 7.09603 7.31792 7.51761 7.70055 7.72279 7.92882 8.11221 8.31328 8.71173 8.79641 9.36464 10.85065 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.002729 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.908811 B =10259.129331 C =10861.618609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.181 3.819 4 C -0.223 4.223 5 C -0.046 4.046 6 C -0.186 4.186 7 C 0.186 3.814 8 O -0.488 6.488 9 C -0.187 4.187 10 C 0.589 3.411 11 O -0.511 6.511 12 N -0.617 5.617 13 C 0.266 3.734 14 C -0.289 4.289 15 C 0.091 3.909 16 C -0.088 4.088 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.319 5.319 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.402 0.598 35 H 0.411 0.589 36 H 0.158 0.842 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 16.708 -10.773 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.134 3.866 4 C -0.241 4.241 5 C -0.064 4.064 6 C -0.205 4.205 7 C 0.140 3.860 8 O -0.300 6.300 9 C -0.192 4.192 10 C 0.374 3.626 11 O -0.385 6.385 12 N -0.263 5.263 13 C 0.013 3.987 14 C -0.320 4.320 15 C -0.041 4.041 16 C -0.146 4.146 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.150 5.150 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.261 0.739 35 H 0.246 0.754 36 H 0.176 0.824 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.452 15.848 -9.456 24.724 hybrid contribution 0.598 0.662 -0.449 0.999 sum -15.854 16.510 -9.905 24.941 Atomic orbital electron populations 1.23173 0.77503 1.04659 1.01513 1.86145 1.22044 1.26082 1.87410 1.18725 0.90069 0.85038 0.92790 1.21195 1.00447 0.91797 1.10706 1.20920 0.93976 0.97240 0.94276 1.21273 0.93930 0.98195 1.07058 1.18104 0.83451 0.89699 0.94743 1.84746 1.15281 1.95669 1.34306 1.19411 0.91179 0.93969 1.14640 1.17535 0.78877 0.82906 0.83310 1.90742 1.54240 1.62321 1.31168 1.42379 1.50846 1.23648 1.09427 1.18968 0.96958 0.89447 0.93285 1.21235 1.11854 0.99282 0.99616 1.21050 0.99434 0.98173 0.85406 1.20373 1.00497 0.96046 0.97721 1.48990 1.37604 1.19001 1.04350 1.19673 0.92354 0.84206 0.89638 1.21305 0.96239 1.08200 1.31736 0.91766 1.24926 0.99191 0.94646 0.95005 1.69913 1.37198 1.12926 1.33003 0.86409 0.83255 0.78522 0.78481 1.19966 1.20982 1.19922 1.77270 1.16876 1.00692 1.20171 0.87732 0.92198 0.92251 0.84518 0.84784 0.84461 0.73944 0.75432 0.82423 0.91113 0.89915 0.90647 0.93027 0.92810 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.66 9.95 -18.66 -0.19 -3.84 16 3 C 0.18 2.08 6.70 -38.71 -0.26 1.82 16 4 C -0.22 -1.80 9.03 -39.46 -0.36 -2.16 16 5 C -0.05 -0.32 10.02 -39.57 -0.40 -0.72 16 6 C -0.19 -1.56 9.97 -39.46 -0.39 -1.95 16 7 C 0.19 2.09 6.72 -38.71 -0.26 1.83 16 8 O -0.49 -5.53 12.95 -18.69 -0.24 -5.78 16 9 C -0.19 -2.50 5.65 -104.73 -0.59 -3.09 16 10 C 0.59 10.04 6.28 -12.61 -0.08 9.96 16 11 O -0.51 -10.04 14.23 5.25 0.07 -9.96 16 12 N -0.62 -11.17 5.44 -12.16 -0.07 -11.23 16 13 C 0.27 5.84 8.11 -154.43 -1.25 4.59 16 14 C -0.29 -6.30 9.52 -39.83 -0.38 -6.68 16 15 C 0.09 2.00 6.92 -82.28 -0.57 1.43 16 16 C -0.09 -1.56 9.89 36.01 0.36 -1.21 16 17 N -0.32 -7.82 3.59 -58.33 -0.21 -8.02 16 18 C 0.26 6.81 5.81 -5.20 -0.03 6.78 16 19 C -0.54 -15.08 9.39 -34.44 -0.32 -15.40 16 20 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 23 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 N -0.32 -7.79 12.59 31.43 0.40 -7.40 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.06 0.31 7.66 -51.92 -0.40 -0.09 16 31 H 0.14 0.73 6.28 -52.49 -0.33 0.40 16 32 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.40 2.96 9.06 45.56 0.41 3.38 16 35 H 0.41 6.53 8.81 -40.82 -0.36 6.17 16 36 H 0.16 3.35 5.91 -52.49 -0.31 3.04 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.05 1.39 7.65 -51.93 -0.40 1.00 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -35.77 367.70 -6.88 -42.65 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.26 Total: 8.21 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -3.64 Total: -1.90 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.86 Total: -51.34 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.35 Total: -19.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.77 -6.88 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433872793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.696 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds