Wall clock time and date at job start Tue Mar 31 2020 15:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 116.99934 * 2 1 4 4 C 1.38572 * 120.12189 * 359.97436 * 3 2 1 5 5 C 1.38228 * 120.23434 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.48988 * 359.97438 * 5 4 3 7 7 C 1.38526 * 120.23369 * 359.76000 * 6 5 4 8 8 O 1.35664 * 120.12103 * 180.25917 * 7 6 5 9 9 C 1.40243 * 120.12317 * 179.97438 * 3 2 1 10 10 C 1.47215 * 120.23430 * 359.97438 * 9 3 2 11 11 O 1.21635 * 120.00001 * 89.99903 * 10 9 3 12 12 N 1.34779 * 119.99378 * 269.99434 * 10 9 3 13 13 C 1.40106 * 119.99507 * 179.97438 * 12 10 9 14 14 C 1.40424 * 125.97626 * 0.27536 * 13 12 10 15 15 C 1.35232 * 107.86568 * 180.16557 * 14 13 12 16 16 C 1.50703 * 126.06766 * 179.84878 * 15 14 13 17 17 N 1.34973 * 107.86541 * 359.58490 * 15 14 13 18 18 C 1.46497 * 125.97532 * 180.23120 * 17 15 14 19 19 C 1.50694 * 109.47559 * 89.99685 * 18 17 15 20 20 H 1.08005 * 119.99538 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00366 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46943 * 59.99938 * 23 21 19 25 25 H 1.48494 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47297 * 300.00162 * 23 21 19 27 27 N 1.31229 * 125.97408 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47406 * 300.00369 * 1 2 3 30 30 H 1.09009 * 109.46876 * 60.00556 * 1 2 3 31 31 H 1.07989 * 119.88144 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.75285 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.88366 * 179.97438 * 6 5 4 34 34 H 0.96700 * 114.00047 * 270.25248 * 8 7 6 35 35 H 0.96995 * 120.00843 * 0.02562 * 12 10 9 36 36 H 1.07998 * 126.06357 * 0.02562 * 14 13 12 37 37 H 1.09002 * 109.47152 * 269.68932 * 16 15 14 38 38 H 1.09001 * 109.46980 * 149.69032 * 16 15 14 39 39 H 1.09004 * 109.47113 * 29.69013 * 16 15 14 40 40 H 1.09005 * 109.46929 * 209.99904 * 18 17 15 41 41 H 1.09004 * 109.46704 * 329.99710 * 18 17 15 42 42 H 0.96998 * 120.00028 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3724 -0.0005 5 6 1.9178 3.6053 -0.0011 6 6 3.2977 3.6922 -0.0005 7 6 4.0690 2.5416 0.0055 8 8 5.4228 2.6295 0.0113 9 6 3.4452 1.2851 0.0005 10 6 4.2547 0.0555 0.0017 11 8 4.5896 -0.4532 -1.0512 12 7 4.6248 -0.5064 1.1695 13 6 5.3948 -1.6770 1.1706 14 6 5.8529 -2.3641 0.0349 15 6 6.5543 -3.4408 0.4563 16 6 7.2257 -4.4626 -0.4248 17 7 6.5514 -3.4345 1.8060 18 6 7.2005 -4.4214 2.6725 19 6 8.6105 -3.9798 2.9686 20 1 8.9855 -3.0560 2.5532 21 6 9.4215 -4.7544 3.7707 22 7 8.9647 -5.8789 4.2770 23 14 11.1691 -4.2065 4.1383 24 1 11.1412 -2.8888 4.8224 25 1 11.8271 -5.2069 5.0166 26 1 11.9286 -4.0886 2.8677 27 7 5.8186 -2.3198 2.2332 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2142 2.3160 -0.0005 32 1 1.3238 4.5074 -0.0011 33 1 3.7759 4.6605 -0.0014 34 1 5.8190 2.6569 -0.8704 35 1 4.3576 -0.1010 2.0091 36 1 5.6745 -2.0838 -0.9927 37 1 6.5290 -5.2737 -0.6365 38 1 8.1032 -4.8610 0.0845 39 1 7.5305 -3.9921 -1.3597 40 1 6.6434 -4.5080 3.6054 41 1 7.2206 -5.3886 2.1702 42 1 9.5353 -6.4240 4.8409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433872793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:47 Heat of formation + Delta-G solvation = -30.256690 kcal Electronic energy + Delta-G solvation = -27635.069186 eV Core-core repulsion = 23581.926381 eV Total energy + Delta-G solvation = -4053.142806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42312 -41.67026 -40.16024 -39.43059 -37.05218 -36.36613 -35.32086 -33.25107 -32.71974 -31.99225 -30.48301 -28.69614 -28.21877 -27.90304 -25.75858 -24.59832 -23.21165 -22.66983 -21.33154 -20.98745 -19.82685 -18.82837 -18.52594 -17.96153 -17.81562 -17.69915 -17.18590 -16.72860 -16.43441 -16.35474 -15.97761 -15.89495 -15.46150 -15.11705 -15.01248 -14.70831 -14.32535 -13.84651 -13.67026 -13.62695 -13.50880 -13.34602 -13.17851 -13.02051 -12.86250 -12.68719 -12.37011 -12.25513 -12.14357 -11.99659 -11.98649 -11.57522 -11.39115 -11.02896 -10.74353 -9.93548 -9.62964 -9.33937 -9.19125 -8.34008 -6.51855 -0.09871 0.24229 0.81442 1.28907 1.36369 1.38204 1.39580 1.49366 2.10675 2.13356 2.25736 2.37730 2.50615 2.95677 3.23736 3.39940 3.82564 3.93278 4.00708 4.10800 4.17727 4.35569 4.38735 4.38816 4.43873 4.62223 4.72590 4.74136 4.75709 4.84101 4.94673 4.96295 5.08327 5.09365 5.20588 5.23352 5.33270 5.52197 5.54115 5.79356 5.87004 6.15431 6.23748 6.26472 6.60034 6.63445 6.89266 7.00715 7.19047 8.72129 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.002729 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.908811 B =10259.129331 C =10861.618609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.341 6.341 3 C 0.168 3.832 4 C -0.215 4.215 5 C -0.029 4.029 6 C -0.181 4.181 7 C 0.174 3.826 8 O -0.507 6.507 9 C -0.222 4.222 10 C 0.593 3.407 11 O -0.543 6.543 12 N -0.615 5.615 13 C 0.271 3.729 14 C -0.299 4.299 15 C 0.091 3.909 16 C -0.085 4.085 17 N -0.340 5.340 18 C 0.275 3.725 19 C -0.556 4.556 20 H 0.049 0.951 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.264 1.264 27 N -0.358 5.358 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.177 0.823 33 H 0.161 0.839 34 H 0.414 0.586 35 H 0.418 0.582 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 19.029 -11.632 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.121 3.879 4 C -0.233 4.233 5 C -0.047 4.047 6 C -0.200 4.200 7 C 0.128 3.872 8 O -0.321 6.321 9 C -0.227 4.227 10 C 0.381 3.619 11 O -0.419 6.419 12 N -0.263 5.263 13 C 0.018 3.982 14 C -0.330 4.330 15 C -0.040 4.040 16 C -0.143 4.143 17 N -0.123 5.123 18 C 0.157 3.843 19 C -0.594 4.594 20 H 0.067 0.933 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.202 1.202 25 H -0.195 1.195 26 H -0.189 1.189 27 N -0.189 5.189 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.195 0.805 33 H 0.179 0.821 34 H 0.275 0.725 35 H 0.255 0.745 36 H 0.182 0.818 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.503 18.187 -10.330 27.273 hybrid contribution 0.762 0.030 -0.242 0.799 sum -16.742 18.217 -10.572 26.906 Atomic orbital electron populations 1.23471 0.75197 1.05680 1.03364 1.86092 1.24641 1.27087 1.87638 1.18940 0.89543 0.86090 0.93313 1.21573 1.01848 0.90817 1.09081 1.21453 0.93633 0.98354 0.91258 1.21574 0.94576 0.97952 1.05883 1.18346 0.83463 0.89911 0.95483 1.84704 1.15954 1.95701 1.35705 1.19339 0.91886 0.92638 1.18808 1.18249 0.78003 0.83504 0.82182 1.90689 1.55478 1.63621 1.32073 1.42609 1.50451 1.22588 1.10610 1.19330 0.96048 0.90005 0.92842 1.21399 1.12278 0.99451 0.99832 1.21762 0.98685 0.98808 0.84754 1.20516 1.00110 0.95868 0.97782 1.48822 1.38915 1.19409 1.05133 1.19268 0.91451 0.84772 0.88829 1.21410 0.97336 1.07976 1.32681 0.93310 1.25737 1.03173 0.94497 0.94331 1.69994 1.38768 1.13662 1.33129 0.85405 0.78303 0.78076 0.78716 1.20172 1.19548 1.18917 1.77188 1.18515 1.01612 1.21563 0.87364 0.90294 0.90288 0.81375 0.80546 0.82103 0.72543 0.74487 0.81788 0.88737 0.91208 0.87870 0.95799 0.92802 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -8.08 9.95 -89.69 -0.89 -8.97 16 3 C 0.17 3.68 6.70 22.84 0.15 3.84 16 4 C -0.21 -2.75 9.03 22.35 0.20 -2.55 16 5 C -0.03 -0.28 10.02 22.27 0.22 -0.06 16 6 C -0.18 -2.50 9.97 22.35 0.22 -2.28 16 7 C 0.17 3.76 6.72 22.84 0.15 3.92 16 8 O -0.51 -11.48 12.95 -89.80 -1.16 -12.65 16 9 C -0.22 -5.93 5.65 -19.93 -0.11 -6.04 16 10 C 0.59 20.90 6.28 86.60 0.54 21.45 16 11 O -0.54 -22.07 14.23 -4.14 -0.06 -22.13 16 12 N -0.62 -23.20 5.44 -310.63 -1.69 -24.89 16 13 C 0.27 12.40 8.11 133.34 1.08 13.48 16 14 C -0.30 -13.37 9.52 22.11 0.21 -13.16 16 15 C 0.09 4.07 6.92 41.38 0.29 4.35 16 16 C -0.08 -2.97 9.89 71.24 0.70 -2.27 16 17 N -0.34 -17.45 3.59 -338.45 -1.22 -18.67 16 18 C 0.28 15.13 5.81 85.63 0.50 15.63 16 19 C -0.56 -32.14 9.39 25.60 0.24 -31.90 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 21 C 0.02 1.33 5.46 84.66 0.46 1.79 16 22 N -0.92 -52.78 13.29 21.45 0.28 -52.49 16 23 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 N -0.36 -18.27 12.59 -54.47 -0.69 -18.96 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 30 H 0.08 0.61 7.66 -2.38 -0.02 0.59 16 31 H 0.17 1.02 6.28 -2.92 -0.02 1.01 16 32 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 33 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.41 6.24 9.06 -74.06 -0.67 5.57 16 35 H 0.42 13.99 8.81 -92.71 -0.82 13.17 16 36 H 0.16 7.11 5.91 -2.91 -0.02 7.09 16 37 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.07 2.64 7.71 -2.39 -0.02 2.62 16 39 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.02 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.05 2.90 7.65 -2.39 -0.02 2.88 16 42 H 0.27 14.72 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -80.57 367.70 2.19 -78.38 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.39 Total: 26.86 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 5.98 Total: 7.50 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -3.31 Total: -115.01 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -2.11 Total: -43.75 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -80.57 2.19 -78.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433872793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.128 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds