Wall clock time and date at job start Tue Mar 31 2020 16:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47456 * 2 1 4 4 N 1.30257 * 125.61612 * 89.99974 * 3 2 1 5 5 C 1.34479 * 108.70214 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.16795 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47414 * 275.02448 * 6 5 4 8 8 C 1.34781 * 120.00496 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99367 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.40027 * 119.99918 * 175.49085 * 10 8 7 12 12 C 1.38915 * 120.00279 * 214.85061 * 11 10 8 13 13 C 1.38008 * 119.99644 * 179.81283 * 12 11 10 14 14 C 1.38899 * 120.00285 * 0.44210 * 13 12 11 15 15 O 1.35787 * 119.99969 * 179.76686 * 14 13 12 16 16 C 1.34814 * 116.99935 * 185.36655 * 15 14 13 17 17 H 1.07997 * 120.00401 * 354.96536 * 16 15 14 18 18 C 1.38634 * 119.99907 * 174.96216 * 16 15 14 19 19 N 1.31568 * 120.00023 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99804 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47251 * 89.99736 * 20 18 16 22 22 H 1.48495 * 109.46870 * 209.99702 * 20 18 16 23 23 H 1.48503 * 109.47262 * 329.99768 * 20 18 16 24 24 C 1.38909 * 120.00634 * 359.79057 * 14 13 12 25 25 C 1.38011 * 119.99571 * 359.97438 * 24 14 13 26 26 C 1.34333 * 107.66350 * 0.02562 * 5 4 3 27 27 O 1.33960 * 125.62412 * 269.97936 * 3 2 1 28 28 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46962 * 299.99780 * 1 2 3 30 30 H 1.08999 * 109.47340 * 59.99592 * 1 2 3 31 31 H 1.09002 * 109.46962 * 240.00220 * 2 1 3 32 32 H 1.09006 * 109.47051 * 120.00604 * 2 1 3 33 33 H 1.09004 * 109.47035 * 35.02632 * 6 5 4 34 34 H 1.09003 * 109.47175 * 155.01959 * 6 5 4 35 35 H 0.97006 * 120.00007 * 359.97438 * 7 6 5 36 36 H 0.96993 * 120.00353 * 355.48925 * 10 8 7 37 37 H 1.07997 * 119.99899 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.99722 * 180.18785 * 13 12 11 39 39 H 0.96998 * 119.99999 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.00129 * 179.97438 * 24 14 13 41 41 H 1.07998 * 119.99885 * 179.97438 * 25 24 14 42 42 H 1.08007 * 126.43828 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2853 2.1359 1.0589 5 6 2.7148 3.3487 0.6677 6 6 3.1161 4.4847 1.5728 7 7 1.9249 5.2434 1.9620 8 6 2.0422 6.3122 2.7746 9 8 3.1368 6.6465 3.1851 10 7 0.9463 7.0105 3.1321 11 6 1.0549 8.0621 4.0503 12 6 0.0261 8.3068 4.9511 13 6 0.1349 9.3408 5.8585 14 6 1.2690 10.1427 5.8650 15 8 1.3739 11.1631 6.7548 16 6 2.4468 11.9707 6.6361 17 1 3.2159 11.7442 5.9124 18 6 2.5630 13.0921 7.4429 19 7 3.6103 13.8800 7.3274 20 14 1.2332 13.4835 8.6950 21 1 1.5601 12.8266 9.9861 22 1 1.1568 14.9533 8.8928 23 1 -0.0745 12.9818 8.2015 24 6 2.2958 9.9012 4.9611 25 6 2.1892 8.8641 4.0568 26 6 2.7204 3.3653 -0.6756 27 8 2.2929 2.1562 -1.0889 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.5998 4.0854 2.4643 34 1 3.8092 5.1412 1.0466 35 1 1.0516 4.9769 1.6342 36 1 0.0824 6.7846 2.7534 37 1 -0.8574 7.6856 4.9435 38 1 -0.6637 9.5292 6.5609 39 1 3.6917 14.6644 7.8922 40 1 3.1773 10.5250 4.9660 41 1 2.9872 8.6765 3.3538 42 1 3.0128 4.1924 -1.3056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434673195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:55 Heat of formation + Delta-G solvation = 0.508212 kcal Electronic energy + Delta-G solvation = -26200.183808 eV Core-core repulsion = 22148.375069 eV Total energy + Delta-G solvation = -4051.808739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.84399 -40.33720 -38.89380 -36.94278 -35.88104 -34.98504 -34.06444 -33.74022 -32.26738 -30.34347 -30.20355 -28.25024 -26.56062 -25.02067 -24.81206 -22.57628 -22.00798 -21.55226 -21.26293 -20.49854 -18.68488 -17.94175 -17.57811 -17.27124 -17.15844 -16.65707 -15.70396 -15.54770 -15.19477 -15.08517 -14.69637 -14.29889 -14.21026 -13.91182 -13.76654 -13.71715 -13.36443 -13.04914 -12.87042 -12.67577 -12.35409 -12.31453 -12.22224 -11.79235 -11.68131 -11.63258 -11.56966 -10.99588 -10.92195 -10.70353 -10.26373 -9.97756 -9.66212 -9.32230 -9.23393 -9.19604 -8.71451 -8.22695 -6.99633 -6.36196 -4.01889 0.92874 1.96263 2.11405 2.21197 2.24935 2.86242 3.24451 3.28416 3.31226 3.43244 3.44078 4.20665 4.25326 4.28001 4.33833 4.55045 4.55521 4.57031 4.77389 4.90270 5.11401 5.15538 5.20153 5.21507 5.28925 5.47055 5.52587 5.58616 5.60654 5.69967 5.79013 6.12344 6.14284 6.19832 6.31348 6.62027 6.68768 6.88722 7.14314 7.19711 7.27096 7.36630 7.64670 7.85277 8.00968 8.08391 8.64225 8.98980 9.61382 10.71527 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.001782 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.360644 B =15709.377937 C =16247.929375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C 0.193 3.807 4 N -0.468 5.468 5 C -0.032 4.032 6 C 0.224 3.776 7 N -0.744 5.744 8 C 0.702 3.298 9 O -0.572 6.572 10 N -0.675 5.675 11 C 0.063 3.937 12 C -0.098 4.098 13 C -0.177 4.177 14 C 0.150 3.850 15 O -0.218 6.218 16 C -0.387 4.387 17 H 0.107 0.893 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.206 4.206 25 C -0.066 4.066 26 C -0.050 4.050 27 O -0.201 6.201 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.398 0.602 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -25.997 -18.324 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 C -0.015 4.015 4 N -0.198 5.198 5 C -0.152 4.152 6 C 0.099 3.901 7 N -0.401 5.401 8 C 0.402 3.598 9 O -0.448 6.448 10 N -0.322 5.322 11 C -0.030 4.030 12 C -0.119 4.119 13 C -0.197 4.197 14 C 0.098 3.902 15 O -0.123 6.123 16 C -0.463 4.463 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.225 4.225 25 C -0.087 4.087 26 C -0.122 4.122 27 O -0.087 6.087 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.232 0.768 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.287 -25.670 -17.094 31.475 hybrid contribution -0.991 0.356 -0.578 1.202 sum -7.278 -25.314 -17.672 31.719 Atomic orbital electron populations 1.21789 0.92919 1.03159 1.03029 1.20093 0.96976 0.84111 1.05327 1.26425 0.99559 0.96976 0.78497 1.70395 1.15914 1.03271 1.30171 1.21740 1.06056 0.94670 0.92733 1.19217 0.86678 0.87260 0.96922 1.45031 1.10373 1.30999 1.53680 1.15878 0.84881 0.79633 0.79374 1.90958 1.25199 1.70093 1.58585 1.42275 1.09475 1.34031 1.46445 1.17098 0.98431 0.91964 0.95517 1.20319 0.98311 0.98507 0.94725 1.19956 0.97943 0.98720 1.03072 1.19146 0.93175 0.88893 0.89022 1.83564 1.45170 1.36088 1.47501 1.20779 0.97880 1.04475 1.23184 0.87581 1.24464 0.97423 0.94343 0.97852 1.69657 1.28041 1.14691 1.39450 0.86173 0.82399 0.77236 0.81029 1.19939 1.20896 1.18365 1.21235 1.01063 1.01075 0.99177 1.20947 0.96880 0.92285 0.98550 1.24963 1.03705 0.87391 0.96119 1.84473 1.63599 1.22769 1.37853 0.90758 0.91629 0.92146 0.88817 0.87485 0.89636 0.89594 0.77145 0.76797 0.86650 0.86104 0.91120 0.84598 0.85264 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.89 37.16 0.37 -0.18 16 2 C -0.03 -0.12 6.56 -27.89 -0.18 -0.30 16 3 C 0.19 1.52 7.60 -12.95 -0.10 1.42 16 4 N -0.47 -4.71 11.29 -7.36 -0.08 -4.79 16 5 C -0.03 -0.29 6.48 -82.81 -0.54 -0.83 16 6 C 0.22 2.23 6.21 -5.20 -0.03 2.20 16 7 N -0.74 -7.78 5.55 -66.42 -0.37 -8.15 16 8 C 0.70 10.24 8.41 -86.92 -0.73 9.51 16 9 O -0.57 -10.85 13.78 5.28 0.07 -10.78 16 10 N -0.67 -9.20 5.35 -14.18 -0.08 -9.27 16 11 C 0.06 1.11 6.30 -83.61 -0.53 0.58 16 12 C -0.10 -1.65 9.96 -39.42 -0.39 -2.04 16 13 C -0.18 -3.50 9.98 -39.42 -0.39 -3.89 16 14 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 15 O -0.22 -5.84 8.58 -0.02 0.00 -5.84 16 16 C -0.39 -11.12 9.94 30.88 0.31 -10.81 16 17 H 0.11 3.13 5.43 -52.49 -0.28 2.84 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.82 13.96 55.48 0.77 -25.04 16 20 Si 0.91 21.93 28.62 -169.99 -4.86 17.07 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.21 -4.69 9.16 -39.42 -0.36 -5.06 16 25 C -0.07 -1.35 8.69 -39.41 -0.34 -1.70 16 26 C -0.05 -0.35 12.08 29.35 0.35 0.01 16 27 O -0.20 -1.58 10.77 5.40 0.06 -1.52 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.20 8.48 -40.82 -0.35 2.85 16 36 H 0.40 3.85 8.84 -40.82 -0.36 3.49 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.14 3.26 5.63 -52.49 -0.30 2.97 16 41 H 0.13 2.65 6.22 -52.49 -0.33 2.32 16 42 H 0.22 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -35.23 366.71 -6.86 -42.09 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.98 Total: 6.86 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.92 Total: -6.15 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.25 Total: -47.26 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.13 Total: -18.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.23 -6.86 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434673195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.594 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds