Wall clock time and date at job start Tue Mar 31 2020 16:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47456 * 2 1 4 4 N 1.30257 * 125.61612 * 89.99974 * 3 2 1 5 5 C 1.34479 * 108.70214 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.16795 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47414 * 275.02448 * 6 5 4 8 8 C 1.34781 * 120.00496 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99367 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.40027 * 119.99918 * 175.49085 * 10 8 7 12 12 C 1.38915 * 120.00279 * 214.85061 * 11 10 8 13 13 C 1.38008 * 119.99644 * 179.81283 * 12 11 10 14 14 C 1.38899 * 120.00285 * 0.44210 * 13 12 11 15 15 O 1.35787 * 119.99969 * 179.76686 * 14 13 12 16 16 C 1.34814 * 116.99935 * 185.36655 * 15 14 13 17 17 H 1.07997 * 120.00401 * 354.96536 * 16 15 14 18 18 C 1.38634 * 119.99907 * 174.96216 * 16 15 14 19 19 N 1.31568 * 120.00023 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99804 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47251 * 89.99736 * 20 18 16 22 22 H 1.48495 * 109.46870 * 209.99702 * 20 18 16 23 23 H 1.48503 * 109.47262 * 329.99768 * 20 18 16 24 24 C 1.38909 * 120.00634 * 359.79057 * 14 13 12 25 25 C 1.38011 * 119.99571 * 359.97438 * 24 14 13 26 26 C 1.34333 * 107.66350 * 0.02562 * 5 4 3 27 27 O 1.33960 * 125.62412 * 269.97936 * 3 2 1 28 28 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46962 * 299.99780 * 1 2 3 30 30 H 1.08999 * 109.47340 * 59.99592 * 1 2 3 31 31 H 1.09002 * 109.46962 * 240.00220 * 2 1 3 32 32 H 1.09006 * 109.47051 * 120.00604 * 2 1 3 33 33 H 1.09004 * 109.47035 * 35.02632 * 6 5 4 34 34 H 1.09003 * 109.47175 * 155.01959 * 6 5 4 35 35 H 0.97006 * 120.00007 * 359.97438 * 7 6 5 36 36 H 0.96993 * 120.00353 * 355.48925 * 10 8 7 37 37 H 1.07997 * 119.99899 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.99722 * 180.18785 * 13 12 11 39 39 H 0.96998 * 119.99999 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.00129 * 179.97438 * 24 14 13 41 41 H 1.07998 * 119.99885 * 179.97438 * 25 24 14 42 42 H 1.08007 * 126.43828 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2853 2.1359 1.0589 5 6 2.7148 3.3487 0.6677 6 6 3.1161 4.4847 1.5728 7 7 1.9249 5.2434 1.9620 8 6 2.0422 6.3122 2.7746 9 8 3.1368 6.6465 3.1851 10 7 0.9463 7.0105 3.1321 11 6 1.0549 8.0621 4.0503 12 6 0.0261 8.3068 4.9511 13 6 0.1349 9.3408 5.8585 14 6 1.2690 10.1427 5.8650 15 8 1.3739 11.1631 6.7548 16 6 2.4468 11.9707 6.6361 17 1 3.2159 11.7442 5.9124 18 6 2.5630 13.0921 7.4429 19 7 3.6103 13.8800 7.3274 20 14 1.2332 13.4835 8.6950 21 1 1.5601 12.8266 9.9861 22 1 1.1568 14.9533 8.8928 23 1 -0.0745 12.9818 8.2015 24 6 2.2958 9.9012 4.9611 25 6 2.1892 8.8641 4.0568 26 6 2.7204 3.3653 -0.6756 27 8 2.2929 2.1562 -1.0889 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.5998 4.0854 2.4643 34 1 3.8092 5.1412 1.0466 35 1 1.0516 4.9769 1.6342 36 1 0.0824 6.7846 2.7534 37 1 -0.8574 7.6856 4.9435 38 1 -0.6637 9.5292 6.5609 39 1 3.6917 14.6644 7.8922 40 1 3.1773 10.5250 4.9660 41 1 2.9872 8.6765 3.3538 42 1 3.0128 4.1924 -1.3056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434673195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:54 Heat of formation + Delta-G solvation = -27.136237 kcal Electronic energy + Delta-G solvation = -26201.382561 eV Core-core repulsion = 22148.375069 eV Total energy + Delta-G solvation = -4053.007493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.43499 -41.65778 -40.56591 -38.48244 -36.79722 -35.56642 -35.42559 -34.56223 -34.28787 -31.86395 -31.06140 -29.63932 -27.62673 -26.84056 -25.23327 -24.09428 -23.18340 -22.52675 -21.91246 -21.81130 -20.14271 -19.46060 -19.14896 -18.43263 -17.94906 -17.67571 -16.86288 -16.50953 -16.30015 -15.97056 -15.80009 -15.67371 -15.57595 -15.41461 -15.23484 -14.79257 -14.42764 -14.19885 -14.16832 -13.97456 -13.57165 -13.51236 -13.33171 -13.23383 -12.73023 -12.60246 -12.45788 -12.31774 -12.04028 -12.01396 -11.63085 -11.52177 -11.37449 -11.00506 -10.65487 -10.22277 -9.90275 -9.83580 -8.63191 -8.47493 -6.19675 0.35714 0.51380 0.56386 1.23632 1.33747 1.38822 1.54681 1.74709 1.87272 2.06028 2.30637 2.79127 2.88717 3.05175 3.18843 3.26257 3.58469 3.85499 4.09773 4.12654 4.18589 4.26088 4.37320 4.48603 4.51676 4.58227 4.64455 4.70934 4.76747 4.87374 4.98246 5.06399 5.07593 5.15684 5.19688 5.27859 5.34708 5.38605 5.50767 5.62908 5.76757 5.92825 5.95455 6.23072 6.68359 6.86198 6.97384 7.48056 7.59451 8.64339 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.001782 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.360644 B =15709.377937 C =16247.929375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C 0.192 3.808 4 N -0.503 5.503 5 C -0.055 4.055 6 C 0.228 3.772 7 N -0.721 5.721 8 C 0.700 3.300 9 O -0.618 6.618 10 N -0.661 5.661 11 C 0.089 3.911 12 C -0.080 4.080 13 C -0.166 4.166 14 C 0.110 3.890 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.076 0.924 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.976 3.024 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.257 1.257 24 C -0.222 4.222 25 C -0.081 4.081 26 C -0.032 4.032 27 O -0.205 6.205 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.411 0.589 36 H 0.423 0.577 37 H 0.172 0.828 38 H 0.145 0.855 39 H 0.284 0.716 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -28.835 -19.686 36.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.015 4.015 4 N -0.233 5.233 5 C -0.174 4.174 6 C 0.103 3.897 7 N -0.378 5.378 8 C 0.400 3.600 9 O -0.498 6.498 10 N -0.311 5.311 11 C -0.005 4.005 12 C -0.100 4.100 13 C -0.186 4.186 14 C 0.061 3.939 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.093 0.907 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.181 1.181 24 C -0.242 4.242 25 C -0.101 4.101 26 C -0.104 4.104 27 O -0.091 6.091 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.247 0.753 36 H 0.262 0.738 37 H 0.189 0.811 38 H 0.162 0.838 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -9.566 -28.592 -18.527 35.387 hybrid contribution -0.002 0.877 -0.440 0.981 sum -9.568 -27.715 -18.967 34.920 Atomic orbital electron populations 1.21763 0.92345 1.04155 1.02177 1.20320 0.97332 0.82359 1.06571 1.27091 0.98594 0.97850 0.78007 1.70356 1.17321 1.04096 1.31512 1.21572 1.08067 0.94340 0.93374 1.19147 0.86375 0.87717 0.96413 1.44841 1.11558 1.29372 1.52017 1.16041 0.84194 0.80247 0.79471 1.90951 1.27102 1.71425 1.60322 1.42059 1.10661 1.32692 1.45639 1.17209 0.97002 0.91175 0.95124 1.20809 0.99428 0.97456 0.92347 1.20375 0.96745 0.97907 1.03531 1.19681 0.95028 0.89485 0.89722 1.83503 1.44498 1.37382 1.49456 1.20683 0.98312 1.05535 1.23063 0.90673 1.25345 0.99854 0.94015 0.99897 1.69751 1.30085 1.15667 1.41149 0.85145 0.79170 0.77703 0.78241 1.19197 1.19298 1.18121 1.21123 1.00475 1.01961 1.00624 1.20938 0.98371 0.92515 0.98304 1.25529 1.01494 0.87598 0.95736 1.84509 1.63586 1.23064 1.37930 0.88865 0.93122 0.92265 0.86702 0.87088 0.91854 0.88763 0.75303 0.73805 0.81096 0.83761 0.90609 0.87677 0.85925 0.73194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 71.98 0.71 -0.05 16 2 C -0.03 -0.18 6.56 29.85 0.20 0.01 16 3 C 0.19 2.69 7.60 88.34 0.67 3.36 16 4 N -0.50 -9.48 11.29 -291.99 -3.30 -12.78 16 5 C -0.05 -0.90 6.48 41.26 0.27 -0.63 16 6 C 0.23 4.30 6.21 85.63 0.53 4.83 16 7 N -0.72 -13.54 5.55 -482.30 -2.68 -16.22 16 8 C 0.70 19.11 8.41 179.05 1.51 20.62 16 9 O -0.62 -23.33 13.78 -4.01 -0.06 -23.39 16 10 N -0.66 -15.79 5.35 -317.03 -1.69 -17.49 16 11 C 0.09 2.92 6.30 38.16 0.24 3.16 16 12 C -0.08 -2.36 9.96 22.38 0.22 -2.14 16 13 C -0.17 -6.16 9.98 22.37 0.22 -5.94 16 14 C 0.11 5.30 6.65 22.59 0.15 5.45 16 15 O -0.24 -13.33 8.58 -22.99 -0.20 -13.53 16 16 C -0.40 -24.34 9.94 67.91 0.68 -23.66 16 17 H 0.08 4.88 5.43 -2.91 -0.02 4.86 16 18 C 0.01 0.41 5.49 84.83 0.47 0.87 16 19 N -0.93 -56.81 13.96 21.61 0.30 -56.51 16 20 Si 0.98 46.08 28.62 68.60 1.96 48.04 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.22 -10.70 9.16 22.38 0.20 -10.49 16 25 C -0.08 -3.34 8.69 22.38 0.19 -3.14 16 26 C -0.03 -0.36 12.08 66.93 0.81 0.45 16 27 O -0.20 -2.73 10.77 -3.58 -0.04 -2.77 16 28 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 5.36 8.48 -92.70 -0.79 4.57 16 36 H 0.42 6.11 8.84 -92.71 -0.82 5.30 16 37 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 40 H 0.11 5.63 5.63 -2.91 -0.02 5.61 16 41 H 0.12 5.21 6.22 -2.91 -0.02 5.19 16 42 H 0.25 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -82.33 366.71 0.86 -81.47 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.51 Total: 20.47 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 7.07 Total: -7.31 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -7.37 Total: -103.00 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.29 Total: -39.68 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.96 Total: 48.04 kcal Total: -82.33 0.86 -81.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434673195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.334 kcal (2) G-P(sol) polarization free energy of solvation -82.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds