Wall clock time and date at job start Tue Mar 31 2020 16:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30254 * 125.62133 * 2 1 4 4 C 1.34471 * 108.70072 * 179.73655 * 3 2 1 5 5 C 1.34323 * 107.66922 * 0.39112 * 4 3 2 6 6 C 1.50705 * 126.44397 * 179.87599 * 5 4 3 7 7 N 1.46504 * 109.46942 * 89.71553 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 O 1.33964 * 125.61703 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46770 * 270.02835 * 1 2 3 29 29 H 1.08999 * 109.46651 * 30.02317 * 1 2 3 30 30 H 1.08999 * 109.46799 * 150.02706 * 1 2 3 31 31 H 1.07998 * 126.16435 * 180.26625 * 4 3 2 32 32 H 1.08997 * 109.46955 * 329.71388 * 6 5 4 33 33 H 1.08995 * 109.47053 * 209.71076 * 6 5 4 34 34 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 35 35 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 37 37 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 38 38 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0059 5 6 3.5698 -0.6757 0.0008 6 6 4.7937 -1.5550 0.0018 7 7 5.1894 -1.8396 1.3834 8 6 6.2657 -2.6122 1.6305 9 8 6.9080 -3.0734 0.7069 10 7 6.6300 -2.8737 2.9016 11 6 7.7995 -3.7140 3.1703 12 6 7.9888 -3.8503 4.6591 13 6 8.7751 -2.9398 5.3418 14 6 8.9515 -3.0618 6.7079 15 6 8.3375 -4.0901 7.3959 16 6 7.5522 -5.0090 6.7126 17 8 6.9523 -6.0242 7.3850 18 6 7.2551 -6.1557 8.6923 19 1 7.8827 -5.4230 9.1776 20 6 6.7606 -7.2318 9.4135 21 7 5.9965 -8.1246 8.8223 22 14 7.1807 -7.4143 11.2245 23 1 6.1579 -6.7147 12.0428 24 1 7.2025 -8.8548 11.5849 25 1 8.5157 -6.8185 11.4855 26 6 7.3774 -4.8841 5.3402 27 8 2.2873 -1.0890 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 4.4157 1.3161 0.0114 32 1 5.6084 -1.0443 -0.5116 33 1 4.5699 -2.4898 -0.5119 34 1 4.6771 -1.4713 2.1202 35 1 6.1173 -2.5060 3.6384 36 1 8.6854 -3.2546 2.7316 37 1 7.6468 -4.7001 2.7320 38 1 9.2521 -2.1319 4.8069 39 1 9.5663 -2.3496 7.2381 40 1 8.4715 -4.1819 8.4636 41 1 5.6509 -8.8775 9.3268 42 1 6.7642 -5.5951 4.8065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434773261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:05 Heat of formation + Delta-G solvation = -6.420634 kcal Electronic energy + Delta-G solvation = -26067.389654 eV Core-core repulsion = 22015.280457 eV Total energy + Delta-G solvation = -4052.109197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.77060 -40.07685 -39.10137 -36.92457 -35.46562 -35.17976 -34.46801 -32.55922 -32.34822 -30.89437 -29.43563 -28.95884 -26.21982 -25.41958 -24.70703 -22.71278 -21.74902 -21.49390 -21.10220 -20.82367 -18.85940 -17.82323 -17.41651 -17.15377 -16.97171 -16.24578 -15.83431 -15.18982 -15.02285 -14.81633 -14.55234 -14.45602 -14.35751 -14.08873 -13.65863 -13.59498 -13.53580 -13.41256 -13.18441 -12.83737 -12.66185 -12.41841 -12.14848 -11.69904 -11.69628 -11.40540 -10.97374 -10.95826 -10.84936 -10.72673 -10.50023 -10.38523 -9.48272 -9.43420 -9.22029 -8.91861 -8.87674 -8.28115 -7.35593 -6.51325 -4.10906 0.86638 1.82759 2.13815 2.22384 2.24801 2.87638 3.08538 3.09751 3.13856 3.14425 3.60814 3.90615 4.18249 4.22856 4.53032 4.57958 4.70174 4.89643 4.90485 4.99916 5.04627 5.06673 5.19309 5.26149 5.43848 5.51837 5.60359 5.73960 5.82416 5.88325 5.88718 6.04890 6.10683 6.22642 6.48079 6.52878 6.77729 6.79280 6.97624 7.16389 7.24970 7.28399 7.33287 7.68177 7.90763 7.92844 8.49967 8.94000 9.62463 10.66389 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.001981 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.912999 B =14131.729515 C =15224.293479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.199 3.801 3 N -0.488 5.488 4 C -0.011 4.011 5 C -0.071 4.071 6 C 0.230 3.770 7 N -0.750 5.750 8 C 0.707 3.293 9 O -0.592 6.592 10 N -0.734 5.734 11 C 0.187 3.813 12 C -0.074 4.074 13 C -0.194 4.194 14 C -0.077 4.077 15 C -0.225 4.225 16 C 0.149 3.851 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.170 4.170 27 O -0.195 6.195 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.187 0.813 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.399 0.601 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 15.786 -14.431 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 N -0.218 5.218 4 C -0.151 4.151 5 C -0.124 4.124 6 C 0.106 3.894 7 N -0.407 5.407 8 C 0.407 3.593 9 O -0.471 6.471 10 N -0.388 5.388 11 C 0.064 3.936 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.190 4.190 27 O -0.082 6.082 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.204 0.796 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.291 15.481 -15.309 22.663 hybrid contribution 0.079 -0.346 1.765 1.801 sum -6.212 15.135 -13.544 21.239 Atomic orbital electron populations 1.20323 0.81066 1.05308 1.05026 1.26455 0.96645 0.78610 0.99041 1.70524 1.02025 1.30240 1.18993 1.23217 0.95286 0.92854 1.03716 1.23337 0.83674 0.95335 1.10061 1.19303 0.88456 0.97926 0.83744 1.45130 1.31684 1.55928 1.07981 1.15844 0.80524 0.79169 0.83764 1.90934 1.55882 1.56843 1.43400 1.45261 1.32728 1.55186 1.05640 1.20026 0.86970 0.94681 0.91967 1.19269 0.98864 0.95902 0.93410 1.20488 1.05104 1.01357 0.94407 1.20750 0.97880 0.96873 0.93986 1.21244 1.04200 0.98103 1.00923 1.19331 0.90953 0.88723 0.91430 1.83982 1.57818 1.42370 1.23768 1.21323 1.32926 1.10503 0.82200 0.89028 1.25302 0.96165 0.94620 1.00411 1.70032 1.30789 1.11852 1.36856 0.85706 0.79098 0.78125 0.80471 1.19855 1.20205 1.19164 1.20099 1.05921 1.01147 0.91801 1.84431 1.16516 1.37723 1.69499 0.88591 0.87944 0.89122 0.79556 0.87943 0.89562 0.76669 0.76622 0.90962 0.90907 0.87461 0.87277 0.85470 0.91933 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.20 1.73 8.34 -12.94 -0.11 1.62 16 3 N -0.49 -4.97 11.29 -11.10 -0.13 -5.09 16 4 C -0.01 -0.10 11.80 -17.78 -0.21 -0.31 16 5 C -0.07 -0.63 6.75 -35.69 -0.24 -0.87 16 6 C 0.23 2.03 6.22 -5.19 -0.03 2.00 16 7 N -0.75 -7.41 5.55 -66.41 -0.37 -7.77 16 8 C 0.71 9.38 8.57 -86.91 -0.74 8.63 16 9 O -0.59 -9.96 16.34 5.29 0.09 -9.88 16 10 N -0.73 -9.33 5.55 -66.42 -0.37 -9.70 16 11 C 0.19 2.68 5.80 -5.19 -0.03 2.65 16 12 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 13 C -0.19 -3.10 9.70 -39.53 -0.38 -3.48 16 14 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 15 C -0.23 -4.64 9.17 -39.40 -0.36 -5.00 16 16 C 0.15 3.45 6.65 -39.11 -0.26 3.19 16 17 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 18 C -0.39 -10.70 9.49 30.89 0.29 -10.40 16 19 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 22 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.17 -3.38 9.65 -39.39 -0.38 -3.76 16 27 O -0.19 -1.90 10.78 5.37 0.06 -1.85 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.19 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 3.29 8.48 -40.82 -0.35 2.94 16 35 H 0.40 4.50 8.48 -40.82 -0.35 4.15 16 36 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -34.04 372.46 -7.53 -41.57 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.04 Total: 9.09 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.12 Total: -8.11 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.10 Total: -46.61 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.14 Total: -16.59 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.04 -7.53 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434773261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.149 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds