Wall clock time and date at job start Tue Mar 31 2020 16:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30254 * 125.62133 * 2 1 4 4 C 1.34471 * 108.70072 * 179.73655 * 3 2 1 5 5 C 1.34323 * 107.66922 * 0.39112 * 4 3 2 6 6 C 1.50705 * 126.44397 * 179.87599 * 5 4 3 7 7 N 1.46504 * 109.46942 * 89.71553 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 O 1.33964 * 125.61703 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46770 * 270.02835 * 1 2 3 29 29 H 1.08999 * 109.46651 * 30.02317 * 1 2 3 30 30 H 1.08999 * 109.46799 * 150.02706 * 1 2 3 31 31 H 1.07998 * 126.16435 * 180.26625 * 4 3 2 32 32 H 1.08997 * 109.46955 * 329.71388 * 6 5 4 33 33 H 1.08995 * 109.47053 * 209.71076 * 6 5 4 34 34 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 35 35 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 37 37 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 38 38 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0059 5 6 3.5698 -0.6757 0.0008 6 6 4.7937 -1.5550 0.0018 7 7 5.1894 -1.8396 1.3834 8 6 6.2657 -2.6122 1.6305 9 8 6.9080 -3.0734 0.7069 10 7 6.6300 -2.8737 2.9016 11 6 7.7995 -3.7140 3.1703 12 6 7.9888 -3.8503 4.6591 13 6 8.7751 -2.9398 5.3418 14 6 8.9515 -3.0618 6.7079 15 6 8.3375 -4.0901 7.3959 16 6 7.5522 -5.0090 6.7126 17 8 6.9523 -6.0242 7.3850 18 6 7.2551 -6.1557 8.6923 19 1 7.8827 -5.4230 9.1776 20 6 6.7606 -7.2318 9.4135 21 7 5.9965 -8.1246 8.8223 22 14 7.1807 -7.4143 11.2245 23 1 6.1579 -6.7147 12.0428 24 1 7.2025 -8.8548 11.5849 25 1 8.5157 -6.8185 11.4855 26 6 7.3774 -4.8841 5.3402 27 8 2.2873 -1.0890 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 4.4157 1.3161 0.0114 32 1 5.6084 -1.0443 -0.5116 33 1 4.5699 -2.4898 -0.5119 34 1 4.6771 -1.4713 2.1202 35 1 6.1173 -2.5060 3.6384 36 1 8.6854 -3.2546 2.7316 37 1 7.6468 -4.7001 2.7320 38 1 9.2521 -2.1319 4.8069 39 1 9.5663 -2.3496 7.2381 40 1 8.4715 -4.1819 8.4636 41 1 5.6509 -8.8775 9.3268 42 1 6.7642 -5.5951 4.8065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434773261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:04 Heat of formation + Delta-G solvation = -32.993228 kcal Electronic energy + Delta-G solvation = -26068.541928 eV Core-core repulsion = 22015.280457 eV Total energy + Delta-G solvation = -4053.261471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.43896 -41.21438 -40.67447 -38.52691 -36.40799 -35.86864 -35.69096 -34.29045 -33.21163 -32.15349 -30.81453 -29.90556 -27.59136 -26.92147 -25.74044 -23.39480 -23.25766 -22.49796 -22.14080 -22.04519 -19.99785 -19.38429 -18.81061 -18.13071 -17.80119 -17.23332 -16.93462 -16.68526 -16.30846 -16.11755 -15.87369 -15.61495 -15.37336 -15.30174 -14.96445 -14.81704 -14.40123 -14.18601 -13.92314 -13.90144 -13.80813 -13.61186 -13.30486 -13.21900 -13.02144 -12.53491 -12.38691 -12.37016 -12.26959 -12.11831 -11.68582 -11.55558 -11.20751 -10.81431 -10.49106 -9.90064 -9.87428 -9.75403 -9.03285 -8.47316 -6.15780 0.16887 0.39922 0.70912 1.35517 1.42670 1.45788 1.52843 1.58474 1.93032 2.08641 2.17229 2.81359 3.07728 3.12386 3.33795 3.43213 3.57119 3.83632 3.96721 4.10038 4.11238 4.31807 4.39133 4.44420 4.53692 4.60951 4.62319 4.64903 4.69060 4.74129 4.94101 5.00627 5.02597 5.11736 5.24725 5.26493 5.31744 5.38737 5.62527 5.71067 5.72279 5.86201 6.01638 6.17465 6.63039 6.95277 6.97558 7.46900 7.78061 8.75781 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.001981 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.912999 B =14131.729515 C =15224.293479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.199 3.801 3 N -0.518 5.518 4 C -0.011 4.011 5 C -0.079 4.079 6 C 0.234 3.766 7 N -0.736 5.736 8 C 0.708 3.292 9 O -0.628 6.628 10 N -0.728 5.728 11 C 0.193 3.807 12 C -0.058 4.058 13 C -0.166 4.166 14 C -0.070 4.070 15 C -0.234 4.234 16 C 0.110 3.890 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.252 1.252 26 C -0.180 4.180 27 O -0.210 6.210 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.207 0.793 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.409 0.591 35 H 0.408 0.592 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 18.763 -14.691 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 N -0.248 5.248 4 C -0.150 4.150 5 C -0.132 4.132 6 C 0.110 3.890 7 N -0.393 5.393 8 C 0.408 3.592 9 O -0.509 6.509 10 N -0.384 5.384 11 C 0.070 3.930 12 C -0.059 4.059 13 C -0.185 4.185 14 C -0.088 4.088 15 C -0.253 4.253 16 C 0.060 3.940 17 O -0.139 6.139 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.175 1.175 26 C -0.200 4.200 27 O -0.098 6.098 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.224 0.776 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.278 18.537 -15.588 24.789 hybrid contribution -0.190 -0.996 1.559 1.860 sum -5.468 17.541 -14.029 23.117 Atomic orbital electron populations 1.20585 0.78370 1.06613 1.06221 1.27345 0.98035 0.78036 0.97351 1.70560 1.02772 1.31055 1.20445 1.23578 0.95612 0.93083 1.02746 1.23277 0.83485 0.95337 1.11098 1.19325 0.88948 0.97747 0.82958 1.45021 1.30550 1.54776 1.08948 1.15894 0.80875 0.79190 0.83254 1.90915 1.57261 1.58339 1.44387 1.45068 1.32453 1.54885 1.05944 1.19896 0.88239 0.94813 0.90074 1.19448 0.97534 0.94487 0.94442 1.21014 1.02523 1.00904 0.94058 1.21170 0.97018 0.96023 0.94617 1.21375 1.04309 0.98766 1.00884 1.19874 0.92502 0.88962 0.92633 1.83948 1.60633 1.45064 1.24282 1.21821 1.33184 1.11096 0.82695 0.87896 1.26590 0.95929 0.94025 1.05626 1.70184 1.33470 1.13181 1.39103 0.84590 0.79556 0.78229 0.73878 1.18779 1.19845 1.17548 1.20236 1.06554 1.02292 0.90955 1.84434 1.17008 1.38439 1.69869 0.87282 0.86791 0.87624 0.77611 0.86675 0.90396 0.75536 0.75622 0.89340 0.92052 0.83261 0.83349 0.86220 0.91896 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 71.24 0.75 0.33 16 2 C 0.20 3.21 8.34 88.35 0.74 3.95 16 3 N -0.52 -9.92 11.29 -303.84 -3.43 -13.35 16 4 C -0.01 -0.18 11.80 83.39 0.98 0.81 16 5 C -0.08 -1.32 6.75 24.79 0.17 -1.15 16 6 C 0.23 3.83 6.22 85.63 0.53 4.37 16 7 N -0.74 -13.30 5.55 -482.29 -2.68 -15.98 16 8 C 0.71 17.56 8.57 179.05 1.53 19.09 16 9 O -0.63 -20.29 16.34 -3.99 -0.07 -20.36 16 10 N -0.73 -16.96 5.55 -482.30 -2.68 -19.64 16 11 C 0.19 5.13 5.80 85.63 0.50 5.62 16 12 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 13 C -0.17 -4.56 9.70 22.30 0.22 -4.34 16 14 C -0.07 -2.16 10.04 22.25 0.22 -1.93 16 15 C -0.23 -9.50 9.17 22.39 0.21 -9.30 16 16 C 0.11 5.26 6.65 22.58 0.15 5.41 16 17 O -0.23 -13.66 9.76 -22.74 -0.22 -13.88 16 18 C -0.41 -23.43 9.49 67.92 0.64 -22.79 16 19 H 0.10 5.32 5.21 -2.91 -0.02 5.30 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 21 N -0.92 -56.09 13.67 21.61 0.30 -55.79 16 22 Si 1.02 42.10 29.55 68.60 2.03 44.12 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 26 C -0.18 -7.29 9.65 22.39 0.22 -7.08 16 27 O -0.21 -3.91 10.78 -3.69 -0.04 -3.95 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 5.96 8.48 -92.70 -0.79 5.17 16 35 H 0.41 8.22 8.48 -92.71 -0.79 7.43 16 36 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 37 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 38 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 39 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 40 H 0.12 4.97 5.64 -2.91 -0.02 4.96 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 42 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -78.71 372.46 -0.06 -78.77 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.48 Total: 29.87 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 7.22 Total: -9.81 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -8.49 Total: -104.77 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.33 Total: -38.19 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -78.71 -0.06 -78.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434773261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.772 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds