Wall clock time and date at job start Tue Mar 31 2020 16:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27568 * 126.41583 * 2 1 4 4 N 1.39148 * 113.16606 * 180.02562 * 3 2 1 5 5 C 1.34956 * 111.12313 * 359.97438 * 4 3 2 6 6 O 1.21296 * 127.49966 * 179.97438 * 5 4 3 7 7 C 1.51439 * 126.41852 * 180.02562 * 2 1 3 8 8 H 1.09004 * 110.73505 * 298.56103 * 7 2 1 9 9 C 1.52991 * 110.60871 * 61.46569 * 7 2 1 10 10 C 1.53003 * 109.47585 * 180.58223 * 9 7 2 11 11 N 1.46498 * 109.47602 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99796 * 179.97438 * 11 10 9 13 13 O 1.21595 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.47533 * 119.99899 * 179.97438 * 12 11 10 15 15 C 1.39670 * 120.19527 * 359.73040 * 14 12 11 16 16 C 1.37830 * 119.91976 * 179.76668 * 15 14 12 17 17 C 1.38576 * 120.32202 * 0.50522 * 16 15 14 18 18 C 1.38022 * 120.40261 * 359.74893 * 17 16 15 19 19 C 1.38839 * 120.07287 * 359.97438 * 18 17 16 20 20 O 1.35515 * 120.16326 * 180.02562 * 19 18 17 21 21 C 1.34813 * 117.00369 * 354.40215 * 20 19 18 22 22 H 1.08004 * 119.99821 * 5.06253 * 21 20 19 23 23 C 1.38693 * 120.00463 * 185.06363 * 21 20 19 24 24 N 1.31518 * 119.99840 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47076 * 89.99896 * 25 23 21 27 27 H 1.48498 * 109.47262 * 210.00203 * 25 23 21 28 28 H 1.48500 * 109.47199 * 330.00035 * 25 23 21 29 29 H 1.08992 * 109.47303 * 269.97893 * 1 2 3 30 30 H 1.09003 * 109.46982 * 29.98789 * 1 2 3 31 31 H 1.09003 * 109.46580 * 149.97501 * 1 2 3 32 32 H 0.97005 * 124.43670 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47482 * 300.58159 * 9 7 2 34 34 H 1.09002 * 109.47007 * 60.58248 * 9 7 2 35 35 H 1.09001 * 109.46659 * 300.00441 * 10 9 7 36 36 H 1.09002 * 109.46471 * 59.99700 * 10 9 7 37 37 H 0.96995 * 119.99452 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.04243 * 0.02562 * 15 14 12 39 39 H 1.07996 * 119.84139 * 180.22653 * 16 15 14 40 40 H 1.07999 * 119.79911 * 179.76757 * 17 16 15 41 41 H 1.07998 * 119.96944 * 180.02562 * 18 17 16 42 42 H 0.97002 * 119.99758 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7077 -0.0006 5 6 3.8037 -0.6292 -0.0004 6 8 4.8580 -1.2288 -0.0012 7 6 2.4061 -1.2186 -0.0005 8 1 2.2430 -1.8189 0.8946 9 6 2.1754 -2.0575 -1.2590 10 6 3.0847 -3.2875 -1.2260 11 7 2.8642 -4.0905 -2.4313 12 6 3.5611 -5.2285 -2.6196 13 8 4.3726 -5.5892 -1.7889 14 6 3.3387 -6.0375 -3.8332 15 6 2.4028 -5.6306 -4.7868 16 6 2.2030 -6.3882 -5.9208 17 6 2.9190 -7.5586 -6.1154 18 6 3.8433 -7.9758 -5.1792 19 6 4.0619 -7.2225 -4.0336 20 8 4.9694 -7.6302 -3.1135 21 6 5.5432 -8.8340 -3.3112 22 1 5.3351 -9.3896 -4.2137 23 6 6.4007 -9.3590 -2.3559 24 7 6.6536 -8.6826 -1.2567 25 14 7.1952 -11.0273 -2.6297 26 1 8.4899 -10.8493 -3.3347 27 1 7.4314 -11.6842 -1.3190 28 1 6.2957 -11.8748 -3.4531 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3632 -0.8898 -0.5142 32 1 4.3361 1.3607 -0.0010 33 1 1.1338 -2.3767 -1.2970 34 1 2.4046 -1.4598 -2.1412 35 1 4.1263 -2.9683 -1.1879 36 1 2.8554 -3.8852 -0.3437 37 1 2.2166 -3.8030 -3.0937 38 1 1.8394 -4.7213 -4.6379 39 1 1.4817 -6.0705 -6.6591 40 1 2.7530 -8.1476 -7.0053 41 1 4.3977 -8.8889 -5.3382 42 1 7.2536 -9.0496 -0.5887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443449223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:59 Heat of formation + Delta-G solvation = -15.365080 kcal Electronic energy + Delta-G solvation = -27342.638832 eV Core-core repulsion = 23290.141775 eV Total energy + Delta-G solvation = -4052.497057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69054 -39.53997 -38.07733 -37.77570 -36.31517 -35.30273 -33.32835 -32.31792 -31.90619 -30.36089 -28.90090 -28.55745 -27.19018 -25.34406 -23.59305 -22.44340 -21.30555 -21.04530 -20.32365 -19.80419 -18.11325 -17.97963 -17.53330 -16.61314 -16.08206 -15.82408 -15.42981 -15.06328 -14.62448 -14.47131 -14.21052 -14.14018 -14.03809 -13.82219 -13.70633 -13.61584 -13.05815 -12.93298 -12.67448 -12.55524 -12.45660 -12.24656 -11.85408 -11.70426 -11.68541 -11.29165 -11.10145 -10.96453 -10.87579 -10.75939 -10.43923 -9.92829 -9.54152 -9.26603 -8.85432 -8.80851 -8.50557 -8.24498 -7.28440 -6.41103 -4.01417 1.19526 1.74445 2.30673 2.33962 2.37365 3.13739 3.14892 3.19643 3.45562 3.54006 3.75804 3.79843 3.95971 4.40636 4.61506 4.67435 4.80053 4.99013 5.06609 5.07167 5.09945 5.12556 5.20227 5.36835 5.48213 5.49056 5.56139 5.71009 5.75076 5.97595 6.04830 6.13924 6.23644 6.38442 6.58310 6.71510 6.93229 6.97181 7.08020 7.21124 7.26115 7.31568 7.66958 7.71658 7.94920 8.15574 8.98028 9.15236 9.70739 10.72546 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.002798 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.110687 B =10005.926248 C =11547.381905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.102 3.898 3 N -0.237 5.237 4 N -0.577 5.577 5 C 0.499 3.501 6 O -0.477 6.477 7 C -0.139 4.139 8 H 0.141 0.859 9 C -0.101 4.101 10 C 0.116 3.884 11 N -0.745 5.745 12 C 0.553 3.447 13 O -0.497 6.497 14 C -0.226 4.226 15 C -0.038 4.038 16 C -0.232 4.232 17 C -0.051 4.051 18 C -0.238 4.238 19 C 0.189 3.811 20 O -0.123 6.123 21 C -0.404 4.404 22 H 0.094 0.906 23 C 0.044 3.956 24 N -0.831 5.831 25 Si 0.941 3.059 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.434 0.566 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.390 0.610 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 15.747 -0.642 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 N -0.045 5.045 4 N -0.325 5.325 5 C 0.283 3.717 6 O -0.346 6.346 7 C -0.163 4.163 8 H 0.158 0.842 9 C -0.140 4.140 10 C -0.008 4.008 11 N -0.401 5.401 12 C 0.342 3.658 13 O -0.371 6.371 14 C -0.231 4.231 15 C -0.057 4.057 16 C -0.251 4.251 17 C -0.070 4.070 18 C -0.257 4.257 19 C 0.129 3.871 20 O -0.021 6.021 21 C -0.480 4.480 22 H 0.111 0.889 23 C -0.164 4.164 24 N -0.462 5.462 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.191 1.191 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.279 0.721 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.225 0.775 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.327 16.148 0.478 20.943 hybrid contribution 0.545 -1.067 -0.531 1.311 sum -12.781 15.081 -0.053 19.769 Atomic orbital electron populations 1.20405 0.84479 1.04710 1.04280 1.25350 0.97561 0.90163 0.96125 1.74605 0.89171 1.26547 1.14212 1.47558 1.04453 1.07822 1.72707 1.21316 0.91337 0.83228 0.75794 1.90908 1.30772 1.65757 1.47168 1.21764 0.93056 0.97711 1.03808 0.84187 1.21475 1.01827 0.95909 0.94764 1.21290 1.00444 0.90303 0.88758 1.45816 1.45102 1.25534 1.23631 1.18230 0.80880 0.80113 0.86583 1.90967 1.32928 1.68995 1.44173 1.18856 1.06196 0.99326 0.98761 1.20744 0.94701 0.97419 0.92874 1.20450 1.06080 0.98724 0.99843 1.20889 0.93905 0.95096 0.97104 1.21157 1.04677 1.03600 0.96289 1.19282 0.87506 0.91442 0.88873 1.84177 1.43622 1.33525 1.40785 1.21495 1.26543 0.93609 1.06365 0.88873 1.25392 0.96752 0.99623 0.94587 1.70136 1.31897 1.37051 1.07138 0.85729 0.79445 0.80088 0.78243 1.19756 1.20135 1.19070 0.89126 0.89588 0.89140 0.72051 0.89088 0.90745 0.90194 0.91449 0.77536 0.87102 0.87315 0.87219 0.85093 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.49 36.01 0.38 0.13 16 2 C 0.10 0.70 6.93 -78.72 -0.55 0.16 16 3 N -0.24 -2.12 12.21 35.53 0.43 -1.68 16 4 N -0.58 -5.76 7.13 31.51 0.22 -5.54 16 5 C 0.50 6.17 8.05 -10.42 -0.08 6.08 16 6 O -0.48 -8.06 16.22 5.54 0.09 -7.97 16 7 C -0.14 -1.24 3.06 -92.08 -0.28 -1.52 16 8 H 0.14 1.09 8.14 -51.93 -0.42 0.66 16 9 C -0.10 -0.91 4.85 -26.73 -0.13 -1.04 16 10 C 0.12 1.71 5.48 -4.04 -0.02 1.69 16 11 N -0.74 -12.06 5.51 -61.35 -0.34 -12.40 16 12 C 0.55 12.47 7.76 -12.47 -0.10 12.37 16 13 O -0.50 -14.15 15.17 -16.57 -0.25 -14.40 16 14 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 15 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 16 C -0.23 -3.79 10.03 -39.61 -0.40 -4.18 16 17 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 18 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 19 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 20 O -0.12 -3.71 7.84 -21.04 -0.16 -3.87 16 21 C -0.40 -11.63 9.49 30.90 0.29 -11.34 16 22 H 0.09 2.42 5.21 -52.48 -0.27 2.15 16 23 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 24 N -0.83 -25.58 13.67 55.48 0.76 -24.83 16 25 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.16 7.57 -51.93 -0.39 -0.24 16 32 H 0.43 3.56 8.96 -183.31 -1.64 1.91 16 33 H 0.09 0.56 7.58 -51.93 -0.39 0.16 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.46 6.21 -51.93 -0.32 1.14 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.39 4.81 6.50 -40.82 -0.27 4.54 16 38 H 0.11 1.42 6.40 -52.48 -0.34 1.08 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -39.51 360.73 -7.84 -47.35 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.02 Total: 7.53 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.99 Total: -5.46 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 1.08 Total: -44.45 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.33 Total: -26.24 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.51 -7.84 -47.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443449223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.985 kcal (2) G-P(sol) polarization free energy of solvation -39.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds