Wall clock time and date at job start Tue Mar 31 2020 16:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27568 * 126.41583 * 2 1 4 4 N 1.39148 * 113.16606 * 180.02562 * 3 2 1 5 5 C 1.34956 * 111.12313 * 359.97438 * 4 3 2 6 6 O 1.21296 * 127.49966 * 179.97438 * 5 4 3 7 7 C 1.51439 * 126.41852 * 180.02562 * 2 1 3 8 8 H 1.09004 * 110.73505 * 298.56103 * 7 2 1 9 9 C 1.52991 * 110.60871 * 61.46569 * 7 2 1 10 10 C 1.53003 * 109.47585 * 180.58223 * 9 7 2 11 11 N 1.46498 * 109.47602 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99796 * 179.97438 * 11 10 9 13 13 O 1.21595 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.47533 * 119.99899 * 179.97438 * 12 11 10 15 15 C 1.39670 * 120.19527 * 359.73040 * 14 12 11 16 16 C 1.37830 * 119.91976 * 179.76668 * 15 14 12 17 17 C 1.38576 * 120.32202 * 0.50522 * 16 15 14 18 18 C 1.38022 * 120.40261 * 359.74893 * 17 16 15 19 19 C 1.38839 * 120.07287 * 359.97438 * 18 17 16 20 20 O 1.35515 * 120.16326 * 180.02562 * 19 18 17 21 21 C 1.34813 * 117.00369 * 354.40215 * 20 19 18 22 22 H 1.08004 * 119.99821 * 5.06253 * 21 20 19 23 23 C 1.38693 * 120.00463 * 185.06363 * 21 20 19 24 24 N 1.31518 * 119.99840 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47076 * 89.99896 * 25 23 21 27 27 H 1.48498 * 109.47262 * 210.00203 * 25 23 21 28 28 H 1.48500 * 109.47199 * 330.00035 * 25 23 21 29 29 H 1.08992 * 109.47303 * 269.97893 * 1 2 3 30 30 H 1.09003 * 109.46982 * 29.98789 * 1 2 3 31 31 H 1.09003 * 109.46580 * 149.97501 * 1 2 3 32 32 H 0.97005 * 124.43670 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47482 * 300.58159 * 9 7 2 34 34 H 1.09002 * 109.47007 * 60.58248 * 9 7 2 35 35 H 1.09001 * 109.46659 * 300.00441 * 10 9 7 36 36 H 1.09002 * 109.46471 * 59.99700 * 10 9 7 37 37 H 0.96995 * 119.99452 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.04243 * 0.02562 * 15 14 12 39 39 H 1.07996 * 119.84139 * 180.22653 * 16 15 14 40 40 H 1.07999 * 119.79911 * 179.76757 * 17 16 15 41 41 H 1.07998 * 119.96944 * 180.02562 * 18 17 16 42 42 H 0.97002 * 119.99758 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7077 -0.0006 5 6 3.8037 -0.6292 -0.0004 6 8 4.8580 -1.2288 -0.0012 7 6 2.4061 -1.2186 -0.0005 8 1 2.2430 -1.8189 0.8946 9 6 2.1754 -2.0575 -1.2590 10 6 3.0847 -3.2875 -1.2260 11 7 2.8642 -4.0905 -2.4313 12 6 3.5611 -5.2285 -2.6196 13 8 4.3726 -5.5892 -1.7889 14 6 3.3387 -6.0375 -3.8332 15 6 2.4028 -5.6306 -4.7868 16 6 2.2030 -6.3882 -5.9208 17 6 2.9190 -7.5586 -6.1154 18 6 3.8433 -7.9758 -5.1792 19 6 4.0619 -7.2225 -4.0336 20 8 4.9694 -7.6302 -3.1135 21 6 5.5432 -8.8340 -3.3112 22 1 5.3351 -9.3896 -4.2137 23 6 6.4007 -9.3590 -2.3559 24 7 6.6536 -8.6826 -1.2567 25 14 7.1952 -11.0273 -2.6297 26 1 8.4899 -10.8493 -3.3347 27 1 7.4314 -11.6842 -1.3190 28 1 6.2957 -11.8748 -3.4531 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3632 -0.8898 -0.5142 32 1 4.3361 1.3607 -0.0010 33 1 1.1338 -2.3767 -1.2970 34 1 2.4046 -1.4598 -2.1412 35 1 4.1263 -2.9683 -1.1879 36 1 2.8554 -3.8852 -0.3437 37 1 2.2166 -3.8030 -3.0937 38 1 1.8394 -4.7213 -4.6379 39 1 1.4817 -6.0705 -6.6591 40 1 2.7530 -8.1476 -7.0053 41 1 4.3977 -8.8889 -5.3382 42 1 7.2536 -9.0496 -0.5887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443449223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:58 Heat of formation + Delta-G solvation = -47.799571 kcal Electronic energy + Delta-G solvation = -27344.045297 eV Core-core repulsion = 23290.141775 eV Total energy + Delta-G solvation = -4053.903522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.49405 -41.25360 -39.81268 -38.75880 -38.01895 -36.61353 -34.38868 -34.26854 -32.95245 -31.77333 -30.55630 -29.06403 -28.27375 -27.32041 -24.91161 -23.81673 -22.90450 -21.98749 -21.36068 -20.99863 -19.84783 -19.23424 -18.91227 -17.87801 -17.46576 -17.11360 -16.50138 -16.36654 -16.23011 -15.96096 -15.78302 -15.60574 -15.34447 -15.23199 -14.66991 -14.45943 -14.35399 -14.27080 -14.11448 -13.55052 -13.45564 -13.25444 -13.02363 -12.97927 -12.78188 -12.71633 -12.64155 -12.51664 -12.31951 -12.12471 -11.76670 -11.42482 -10.84117 -10.82903 -10.62208 -10.11340 -10.02509 -9.76430 -9.02545 -8.44651 -6.16226 0.13857 0.50076 0.74436 1.30967 1.43132 1.47841 1.50743 1.63160 2.10948 2.15395 2.24282 2.74407 2.88121 2.98940 3.23743 3.48139 3.66413 3.82243 3.91603 4.06012 4.10491 4.15643 4.30995 4.40096 4.53280 4.59373 4.66493 4.74712 4.89021 4.94114 4.97916 5.03167 5.06104 5.08462 5.16374 5.38437 5.49689 5.51816 5.62419 5.64116 5.71222 5.95915 6.19208 6.48223 6.72235 6.83537 6.94323 7.50972 7.81318 8.76048 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.002798 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.110687 B =10005.926248 C =11547.381905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.132 3.868 3 N -0.262 5.262 4 N -0.574 5.574 5 C 0.483 3.517 6 O -0.540 6.540 7 C -0.140 4.140 8 H 0.154 0.846 9 C -0.083 4.083 10 C 0.115 3.885 11 N -0.713 5.713 12 C 0.544 3.456 13 O -0.572 6.572 14 C -0.246 4.246 15 C -0.027 4.027 16 C -0.199 4.199 17 C -0.040 4.040 18 C -0.259 4.259 19 C 0.147 3.853 20 O -0.191 6.191 21 C -0.427 4.427 22 H 0.108 0.892 23 C -0.025 4.025 24 N -0.907 5.907 25 Si 1.023 2.977 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.245 1.245 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.438 0.562 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.415 0.585 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.122 0.878 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.267 16.985 -4.135 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 N -0.070 5.070 4 N -0.320 5.320 5 C 0.270 3.730 6 O -0.415 6.415 7 C -0.164 4.164 8 H 0.171 0.829 9 C -0.122 4.122 10 C -0.010 4.010 11 N -0.369 5.369 12 C 0.334 3.666 13 O -0.451 6.451 14 C -0.250 4.250 15 C -0.046 4.046 16 C -0.218 4.218 17 C -0.058 4.058 18 C -0.278 4.278 19 C 0.092 3.908 20 O -0.094 6.094 21 C -0.503 4.503 22 H 0.125 0.875 23 C -0.224 4.224 24 N -0.543 5.543 25 Si 0.842 3.158 26 H -0.188 1.188 27 H -0.197 1.197 28 H -0.169 1.169 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.283 0.717 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.139 0.861 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.774 17.494 -3.105 25.849 hybrid contribution 1.779 -1.148 0.282 2.136 sum -16.995 16.346 -2.823 23.749 Atomic orbital electron populations 1.20718 0.80881 1.06473 1.05935 1.26010 0.98993 0.88039 0.93006 1.74725 0.88232 1.27062 1.16931 1.47655 1.05582 1.07206 1.71595 1.21972 0.92047 0.84077 0.74938 1.90879 1.33187 1.67106 1.50318 1.21838 0.91372 0.98698 1.04466 0.82905 1.21424 1.02777 0.92938 0.95058 1.21327 0.99826 0.92204 0.87598 1.45488 1.43727 1.23342 1.24383 1.18634 0.80398 0.81397 0.86204 1.90949 1.36355 1.71169 1.46651 1.19316 1.07245 0.98565 0.99911 1.21340 0.92741 0.99075 0.91401 1.21204 1.04482 0.96503 0.99563 1.21449 0.91572 0.95822 0.96993 1.21298 1.06459 1.03531 0.96546 1.20140 0.87903 0.93247 0.89555 1.84186 1.46960 1.34655 1.43608 1.22050 1.26979 0.94179 1.07119 0.87496 1.26807 0.97293 1.04307 0.93956 1.70345 1.34726 1.40066 1.09185 0.84547 0.78563 0.74251 0.78479 1.18754 1.19737 1.16860 0.87357 0.88469 0.86648 0.71691 0.84220 0.89880 0.94464 0.92759 0.74643 0.81686 0.81526 0.82841 0.86052 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.08 10.49 71.24 0.75 0.67 16 2 C 0.13 1.40 6.93 46.83 0.32 1.72 16 3 N -0.26 -4.18 12.21 -40.84 -0.50 -4.68 16 4 N -0.57 -11.56 7.13 -172.50 -1.23 -12.79 16 5 C 0.48 12.47 8.05 87.94 0.71 13.18 16 6 O -0.54 -20.15 16.22 -3.08 -0.05 -20.20 16 7 C -0.14 -2.25 3.06 -11.74 -0.04 -2.29 16 8 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 9 C -0.08 -1.27 4.85 30.59 0.15 -1.13 16 10 C 0.11 3.43 5.48 86.38 0.47 3.90 16 11 N -0.71 -22.43 5.51 -466.27 -2.57 -25.00 16 12 C 0.54 25.50 7.76 86.70 0.67 26.17 16 13 O -0.57 -35.63 15.17 16.88 0.26 -35.37 16 14 C -0.25 -10.79 5.89 -19.99 -0.12 -10.91 16 15 C -0.03 -0.79 9.53 22.52 0.21 -0.58 16 16 C -0.20 -5.12 10.03 22.25 0.22 -4.90 16 17 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 18 C -0.26 -11.21 9.16 22.36 0.20 -11.00 16 19 C 0.15 7.72 6.66 22.91 0.15 7.87 16 20 O -0.19 -12.56 7.84 0.91 0.01 -12.55 16 21 C -0.43 -26.54 9.49 67.93 0.64 -25.89 16 22 H 0.11 5.93 5.21 -2.91 -0.02 5.91 16 23 C -0.02 -1.51 5.49 84.85 0.47 -1.05 16 24 N -0.91 -61.34 13.67 21.62 0.30 -61.04 16 25 Si 1.02 45.44 29.55 68.60 2.03 47.46 16 26 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 29 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.12 -0.38 7.57 -2.39 -0.02 -0.40 16 32 H 0.44 7.60 8.96 -213.92 -1.92 5.68 16 33 H 0.14 0.85 7.58 -2.39 -0.02 0.83 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 1.48 6.21 -2.39 -0.01 1.46 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 8.49 6.50 -92.71 -0.60 7.89 16 38 H 0.17 2.96 6.40 -2.91 -0.02 2.94 16 39 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 42 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 Total: -1.00 -105.26 360.73 1.88 -103.38 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -1.42 Total: 26.04 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.05 Total: -5.25 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.00 Total: -103.51 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: 0.21 Total: -68.12 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -105.26 1.88 -103.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443449223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.584 kcal (2) G-P(sol) polarization free energy of solvation -105.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds