Wall clock time and date at job start Tue Mar 31 2020 16:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99896 * 2 1 4 4 C 1.53003 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46993 * 64.99921 * 4 3 2 6 6 C 1.36812 * 120.00387 * 264.82674 * 5 4 3 7 7 H 1.08000 * 120.00322 * 136.99027 * 6 5 4 8 8 C 1.39080 * 119.99593 * 316.99370 * 6 5 4 9 9 N 1.31341 * 120.00209 * 343.51996 * 8 6 5 10 10 Si 1.86801 * 120.00043 * 163.52358 * 8 6 5 11 11 H 1.48499 * 109.46983 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47459 * 119.99600 * 10 8 6 13 13 H 1.48498 * 109.47182 * 239.99896 * 10 8 6 14 14 C 1.34784 * 120.00289 * 84.82252 * 5 4 3 15 15 O 1.21625 * 119.99150 * 4.68036 * 14 5 4 16 16 C 1.47573 * 120.00319 * 184.67273 * 14 5 4 17 17 C 1.39811 * 120.00985 * 323.88042 * 16 14 5 18 18 C 1.37115 * 119.99196 * 179.97438 * 17 16 14 19 19 C 1.39748 * 120.00615 * 0.02562 * 18 17 16 20 20 C 1.47719 * 119.98885 * 179.97438 * 19 18 17 21 21 N 1.31290 * 126.37579 * 359.67822 * 20 19 18 22 22 N 1.28666 * 109.22550 * 180.26620 * 21 20 19 23 23 C 1.30474 * 109.51827 * 0.02562 * 22 21 20 24 24 C 1.50700 * 126.18326 * 179.97438 * 23 22 21 25 25 O 1.34339 * 107.63545 * 0.02562 * 23 22 21 26 26 C 1.39740 * 120.01529 * 0.25177 * 19 18 17 27 27 C 1.37107 * 120.00987 * 359.48697 * 26 19 18 28 28 H 1.09005 * 109.47049 * 59.99927 * 1 2 3 29 29 H 1.08991 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47227 * 300.00504 * 1 2 3 31 31 H 1.08996 * 109.47216 * 59.99655 * 3 2 1 32 32 H 1.09001 * 109.47213 * 299.99304 * 3 2 1 33 33 H 1.08993 * 109.47137 * 305.00243 * 4 3 2 34 34 H 1.08997 * 109.46953 * 184.99645 * 4 3 2 35 35 H 0.96994 * 120.00391 * 180.02562 * 9 8 6 36 36 H 1.08004 * 120.00434 * 359.95643 * 17 16 14 37 37 H 1.08002 * 119.99510 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.47275 * 270.02926 * 24 23 22 39 39 H 1.08998 * 109.46621 * 30.03199 * 24 23 22 40 40 H 1.09002 * 109.46796 * 150.02392 * 24 23 22 41 41 H 1.08003 * 119.99173 * 179.72480 * 26 19 18 42 42 H 1.08002 * 120.00174 * 180.28133 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1996 -0.7849 -1.3042 7 1 3.8528 -1.3565 -2.1523 8 6 4.8728 -1.4199 -0.2660 9 7 5.5711 -0.7133 0.5932 10 14 4.7841 -3.2778 -0.0936 11 1 3.9391 -3.8359 -1.1798 12 1 6.1514 -3.8496 -0.1863 13 1 4.1906 -3.6250 1.2226 14 6 4.1629 1.3215 -2.3500 15 8 4.0476 2.5304 -2.2818 16 6 4.5069 0.6844 -3.6358 17 6 5.3393 -0.4387 -3.6592 18 6 5.6583 -1.0307 -4.8541 19 6 5.1519 -0.5113 -6.0486 20 6 5.4962 -1.1490 -7.3357 21 7 6.2669 -2.1987 -7.5031 22 7 6.3465 -2.4700 -8.7583 23 6 5.6359 -1.6108 -9.4359 24 6 5.4665 -1.5807 -10.9331 25 8 5.0835 -0.7572 -8.5580 26 6 4.3246 0.6147 -6.0260 27 6 4.0009 1.2040 -4.8311 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0901 35 1 6.0409 -1.1562 1.3170 36 1 5.7313 -0.8397 -2.7361 37 1 6.3009 -1.8985 -4.8722 38 1 6.2457 -0.9594 -11.3745 39 1 5.5426 -2.5939 -11.3277 40 1 4.4886 -1.1672 -11.1798 41 1 3.9370 1.0185 -6.9497 42 1 3.3578 2.0715 -4.8135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001450838719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:50 Heat of formation + Delta-G solvation = -23.867014 kcal Electronic energy + Delta-G solvation = -27936.869953 eV Core-core repulsion = 23884.004225 eV Total energy + Delta-G solvation = -4052.865728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.23605 -41.18567 -39.51410 -38.45507 -37.30004 -36.70999 -34.47327 -33.58249 -32.54010 -32.15114 -30.70987 -28.88338 -27.31032 -26.84002 -25.79494 -24.15128 -23.99468 -22.93540 -22.69889 -21.14138 -19.54400 -18.69391 -18.53708 -17.97915 -17.32998 -17.18067 -16.97181 -16.56962 -16.31094 -16.04778 -15.65889 -15.42545 -15.27082 -14.97940 -14.69743 -14.43717 -14.22044 -13.83568 -13.68498 -13.60474 -13.48619 -13.35242 -13.22663 -12.99207 -12.96915 -12.86142 -12.57025 -12.49538 -12.20440 -12.03832 -11.95140 -11.81423 -11.16066 -11.04624 -10.56234 -10.44091 -10.03570 -9.54596 -9.41450 -8.29398 -6.03220 -0.76129 0.40839 0.47903 1.09954 1.27983 1.44766 1.50675 1.60963 2.03312 2.31944 2.71015 2.75328 2.88285 2.99407 3.20688 3.32886 3.75836 3.91027 4.02591 4.05752 4.18917 4.25174 4.36340 4.36553 4.42584 4.50977 4.54849 4.58764 4.59462 4.62256 4.72954 4.73673 4.80767 4.86733 5.05102 5.07035 5.24017 5.30109 5.34957 5.50177 5.56966 5.80213 5.98947 6.39837 6.40917 7.11352 7.15190 7.50121 7.93427 8.74654 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003363 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.225151 B = 8323.224606 C = 9233.583227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.116 3.884 5 N -0.423 5.423 6 C -0.330 4.330 7 H 0.091 0.909 8 C 0.018 3.982 9 N -0.888 5.888 10 Si 0.967 3.033 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.492 3.508 15 O -0.630 6.630 16 C -0.086 4.086 17 C -0.075 4.075 18 C -0.080 4.080 19 C -0.029 4.029 20 C 0.214 3.786 21 N -0.305 5.305 22 N -0.326 5.326 23 C 0.172 3.828 24 C -0.056 4.056 25 O -0.221 6.221 26 C -0.080 4.080 27 C -0.084 4.084 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.273 0.727 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.162 0.838 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 -0.875 -15.228 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.008 4.008 5 N -0.138 5.138 6 C -0.458 4.458 7 H 0.108 0.892 8 C -0.186 4.186 9 N -0.525 5.525 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.206 1.206 14 C 0.282 3.718 15 O -0.519 6.519 16 C -0.090 4.090 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.031 4.031 20 C 0.005 3.995 21 N -0.151 5.151 22 N -0.172 5.172 23 C -0.038 4.038 24 C -0.113 4.113 25 O -0.101 6.101 26 C -0.100 4.100 27 C -0.103 4.103 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.179 0.821 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.524 -1.540 -14.734 15.489 hybrid contribution -0.772 0.411 0.577 1.048 sum -5.295 -1.129 -14.157 15.157 Atomic orbital electron populations 1.22886 0.80586 1.03344 1.00294 1.88061 1.20492 1.27742 1.95329 1.22827 0.94151 0.84715 0.99738 1.21393 0.91561 0.98005 0.89820 1.43354 1.55077 1.07578 1.07798 1.19482 1.35534 0.82194 1.08617 0.89158 1.25974 0.93447 1.03189 0.96013 1.69949 1.28044 1.38086 1.16400 0.85261 0.78147 0.78854 0.78578 1.18552 1.20229 1.20616 1.18810 0.80846 0.86012 0.86096 1.90593 1.59284 1.15028 1.86994 1.20258 0.98697 0.96304 0.93723 1.21791 0.95367 0.93175 0.98998 1.21053 0.98862 1.00181 0.89862 1.17425 1.02610 0.97471 0.85614 1.25453 0.95120 0.93319 0.85577 1.74706 1.17214 1.12978 1.10245 1.74369 1.21063 1.24248 0.97565 1.29242 0.91239 0.85156 0.98118 1.20785 1.06922 1.07533 0.76102 1.84825 1.59184 1.49920 1.16152 1.21082 0.96320 0.93662 0.98926 1.21059 0.99218 0.99675 0.90316 0.94220 0.88860 0.92915 0.91225 0.94822 0.89047 0.91976 0.91732 0.83216 0.83829 0.86021 0.86043 0.86468 0.82085 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -16.00 10.42 -148.98 -1.55 -17.55 16 3 C 0.06 2.51 6.25 71.98 0.45 2.96 16 4 C 0.12 5.45 5.30 86.38 0.46 5.90 16 5 N -0.42 -20.95 2.44 -639.10 -1.56 -22.51 16 6 C -0.33 -16.21 5.86 84.12 0.49 -15.72 16 7 H 0.09 4.39 6.49 -2.91 -0.02 4.37 16 8 C 0.02 0.87 4.93 84.97 0.42 1.29 16 9 N -0.89 -45.83 11.64 21.69 0.25 -45.57 16 10 Si 0.97 39.70 29.58 68.60 2.03 41.73 16 11 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 12 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 14 C 0.49 24.08 7.31 86.71 0.63 24.71 16 15 O -0.63 -33.12 16.48 -4.11 -0.07 -33.19 16 16 C -0.09 -3.60 5.45 -20.05 -0.11 -3.71 16 17 C -0.07 -2.97 7.75 22.39 0.17 -2.80 16 18 C -0.08 -2.76 9.66 22.37 0.22 -2.54 16 19 C -0.03 -0.91 5.88 -20.04 -0.12 -1.03 16 20 C 0.21 6.51 7.98 87.28 0.70 7.21 16 21 N -0.30 -10.19 11.91 -166.32 -1.98 -12.17 16 22 N -0.33 -9.56 12.22 -165.32 -2.02 -11.58 16 23 C 0.17 3.71 8.47 88.31 0.75 4.46 16 24 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 25 O -0.22 -5.54 10.65 -8.02 -0.09 -5.63 16 26 C -0.08 -2.31 9.68 22.37 0.22 -2.10 16 27 C -0.08 -2.87 9.57 22.39 0.21 -2.66 16 28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 4.61 5.84 -2.39 -0.01 4.59 16 34 H 0.06 2.99 7.52 -2.39 -0.02 2.97 16 35 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 36 H 0.15 6.58 5.71 -2.91 -0.02 6.56 16 37 H 0.14 4.66 7.85 -2.91 -0.02 4.64 16 38 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.16 3.50 7.92 -2.91 -0.02 3.48 16 42 H 0.14 4.55 8.01 -2.91 -0.02 4.53 16 Total: -1.00 -68.32 365.05 2.56 -65.75 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.06 Total: 22.45 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.49 Total: 18.27 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -5.31 Total: -91.83 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -1.71 Total: -56.37 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -68.32 2.56 -65.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450838719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.887 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds