Wall clock time and date at job start Tue Mar 31 2020 15:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46979 * 180.02562 * 7 6 4 9 9 C 1.38194 * 119.97105 * 259.72542 * 8 7 6 10 10 C 1.38155 * 120.11253 * 179.72745 * 9 8 7 11 11 C 1.38799 * 120.05087 * 0.54571 * 10 9 8 12 12 O 1.35891 * 120.02770 * 179.70682 * 11 10 9 13 13 C 1.38616 * 119.94185 * 359.72685 * 11 10 9 14 14 C 1.38650 * 119.89647 * 0.02562 * 13 11 10 15 15 O 1.35900 * 120.03128 * 180.02562 * 14 13 11 16 16 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 17 17 N 1.30448 * 108.01917 * 0.02562 * 16 3 2 18 18 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 19 19 C 1.46494 * 125.75336 * 0.23997 * 18 2 1 20 20 C 1.50700 * 109.47034 * 90.00525 * 19 18 2 21 21 H 1.08000 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00281 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00059 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00448 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46888 * 89.99706 * 24 22 20 26 26 H 1.48496 * 109.47230 * 210.00192 * 24 22 20 27 27 H 1.48499 * 109.46619 * 329.99846 * 24 22 20 28 28 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 29 29 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 30 30 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 31 31 H 0.97001 * 120.00147 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.47456 * 299.99853 * 7 6 4 33 33 H 1.08993 * 109.47342 * 60.00310 * 7 6 4 34 34 H 1.07998 * 119.94699 * 0.02562 * 9 8 7 35 35 H 1.07993 * 119.97920 * 180.25102 * 10 9 8 36 36 H 0.96708 * 114.00138 * 270.01867 * 12 11 10 37 37 H 1.08006 * 120.05178 * 180.02562 * 13 11 10 38 38 H 0.96699 * 113.99031 * 269.97669 * 15 14 13 39 39 H 1.07998 * 125.98994 * 179.97438 * 16 3 2 40 40 H 1.09003 * 109.46965 * 209.99756 * 19 18 2 41 41 H 1.09000 * 109.47680 * 330.00516 * 19 18 2 42 42 H 0.96997 * 120.00149 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 6 3.5716 5.8115 -0.0080 9 6 3.9925 6.3989 1.1700 10 6 5.1022 7.2218 1.1763 11 6 5.7905 7.4696 -0.0033 12 8 6.8784 8.2838 0.0024 13 6 5.3669 6.8860 -1.1871 14 6 4.2560 6.0564 -1.1899 15 8 3.8387 5.4824 -2.3489 16 6 3.6591 0.6499 0.0063 17 7 3.6340 -0.6543 0.0092 18 7 2.3017 -1.0822 0.0059 19 6 1.8501 -2.4757 0.0085 20 6 1.7002 -2.9579 -1.4114 21 1 1.9190 -2.2926 -2.2335 22 6 1.2836 -4.2483 -1.6610 23 7 1.0177 -5.0587 -0.6599 24 14 1.0971 -4.8457 -3.4211 25 1 2.3797 -5.4349 -3.8823 26 1 0.0286 -5.8750 -3.4838 27 1 0.7346 -3.7020 -4.2961 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 3.7461 3.2974 -0.0002 32 1 1.7694 5.1014 -0.9030 33 1 1.7621 5.1059 0.8769 34 1 3.4559 6.2105 2.0881 35 1 5.4315 7.6765 2.0988 36 1 6.6729 9.2160 -0.1530 37 1 5.9015 7.0772 -2.1059 38 1 3.1978 6.0129 -2.8418 39 1 4.5449 1.2677 0.0075 40 1 2.5830 -3.0942 0.5267 41 1 0.8897 -2.5456 0.5192 42 1 0.7250 -5.9666 -0.8354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451772407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:03 Heat of formation + Delta-G solvation = -30.705441 kcal Electronic energy + Delta-G solvation = -26983.782299 eV Core-core repulsion = 22930.620034 eV Total energy + Delta-G solvation = -4053.162265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80156 -40.54132 -38.76293 -38.16220 -36.32133 -34.50148 -33.83866 -32.08646 -31.28082 -30.81560 -30.17733 -27.56215 -26.67636 -25.54853 -23.38155 -23.22391 -22.19119 -21.59364 -19.81435 -19.44884 -19.00890 -17.51950 -17.21900 -16.79335 -16.75651 -16.29573 -15.66287 -15.43155 -15.02112 -14.90401 -14.48695 -14.35785 -14.13868 -14.00215 -13.72504 -13.19373 -13.07659 -12.62061 -12.58829 -12.36818 -12.29311 -12.05744 -12.03260 -11.73562 -11.43890 -11.13896 -11.09785 -10.98024 -10.86691 -10.34998 -10.15067 -9.90682 -9.48977 -9.26358 -8.94616 -8.84762 -8.68920 -8.54394 -7.86161 -6.31424 -4.39006 0.63048 0.80698 2.23914 2.84655 2.91487 3.20109 3.26080 3.27347 3.35458 3.56358 3.79650 3.96541 3.97801 4.26433 4.38261 4.43875 4.66140 4.95510 5.02473 5.12727 5.22050 5.31656 5.36736 5.47152 5.53603 5.70021 5.74910 5.81794 5.91831 5.99688 6.08454 6.16201 6.20708 6.44930 6.57776 6.65515 6.83991 6.93619 7.13361 7.20393 7.29683 7.58984 7.78867 7.79896 7.83722 8.42440 8.64669 8.67668 9.27735 10.76783 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.002255 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.840535 B =12414.882107 C =12672.832575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.332 4.332 4 C 0.605 3.395 5 O -0.559 6.559 6 N -0.726 5.726 7 C 0.175 3.825 8 C -0.141 4.141 9 C -0.067 4.067 10 C -0.157 4.157 11 C 0.126 3.874 12 O -0.498 6.498 13 C -0.176 4.176 14 C 0.143 3.857 15 O -0.487 6.487 16 C 0.059 3.941 17 N -0.296 5.296 18 N -0.314 5.314 19 C 0.251 3.749 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.399 0.601 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.392 0.608 37 H 0.136 0.864 38 H 0.393 0.607 39 H 0.174 0.826 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 27.087 2.279 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 C -0.347 4.347 4 C 0.396 3.604 5 O -0.439 6.439 6 N -0.378 5.378 7 C 0.051 3.949 8 C -0.142 4.142 9 C -0.086 4.086 10 C -0.176 4.176 11 C 0.082 3.918 12 O -0.308 6.308 13 C -0.195 4.195 14 C 0.098 3.902 15 O -0.298 6.298 16 C -0.128 4.128 17 N -0.116 5.116 18 N -0.091 5.091 19 C 0.134 3.866 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.233 0.767 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.249 0.751 37 H 0.154 0.846 38 H 0.250 0.750 39 H 0.191 0.809 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.563 24.846 2.599 25.593 hybrid contribution -0.350 1.008 -1.267 1.656 sum 5.214 25.853 1.332 26.408 Atomic orbital electron populations 1.20562 0.86827 1.03714 1.03894 1.21470 0.94938 0.86538 0.94326 1.19654 0.93107 0.92460 1.29478 1.17292 0.84906 0.83861 0.74328 1.90683 1.16697 1.84466 1.52008 1.45681 1.09947 1.04624 1.77549 1.19855 0.92501 0.79779 1.02753 1.20365 0.99037 1.01312 0.93490 1.20927 0.95418 0.94827 0.97439 1.21458 0.96077 1.01674 0.98341 1.18298 0.87129 0.94376 0.92040 1.84839 1.29720 1.21807 1.94443 1.21714 0.98520 1.00201 0.99062 1.18127 0.93272 0.92659 0.86165 1.84896 1.64337 1.47364 1.33200 1.23719 0.96379 0.92591 1.00128 1.77137 0.98587 1.12279 1.23614 1.49357 1.02497 1.08275 1.48988 1.19845 0.96391 0.70954 0.99427 1.21252 1.47319 0.98103 0.91040 0.91668 1.24926 0.94467 0.96020 0.98287 1.69915 1.44599 1.07190 1.31056 0.86320 0.78069 0.78630 0.83495 1.20256 1.20800 1.19596 0.89877 0.90916 0.88848 0.76655 0.90906 0.90836 0.84642 0.84923 0.75124 0.84611 0.74968 0.80864 0.92534 0.92553 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.56 36.01 0.34 -1.35 16 2 C 0.16 3.43 7.01 -81.60 -0.57 2.86 16 3 C -0.33 -6.26 6.13 -105.07 -0.64 -6.91 16 4 C 0.61 10.27 7.81 -12.52 -0.10 10.18 16 5 O -0.56 -10.66 14.84 5.28 0.08 -10.59 16 6 N -0.73 -9.40 5.54 -62.56 -0.35 -9.75 16 7 C 0.17 1.83 5.46 -5.19 -0.03 1.80 16 8 C -0.14 -1.23 5.26 -104.44 -0.55 -1.78 16 9 C -0.07 -0.50 9.66 -39.63 -0.38 -0.89 16 10 C -0.16 -1.12 9.98 -39.40 -0.39 -1.51 16 11 C 0.13 0.97 6.70 -39.23 -0.26 0.71 16 12 O -0.50 -3.35 13.50 -19.40 -0.26 -3.61 16 13 C -0.18 -1.43 9.93 -39.29 -0.39 -1.82 16 14 C 0.14 1.25 6.67 -39.24 -0.26 0.99 16 15 O -0.49 -4.30 12.73 -19.43 -0.25 -4.55 16 16 C 0.06 1.08 11.50 -16.98 -0.20 0.88 16 17 N -0.30 -6.58 12.50 30.86 0.39 -6.19 16 18 N -0.31 -7.27 3.56 -57.77 -0.21 -7.48 16 19 C 0.25 6.35 5.97 -5.20 -0.03 6.32 16 20 C -0.54 -14.73 9.39 -34.44 -0.32 -15.05 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 24 Si 0.91 21.07 29.54 -169.99 -5.02 16.04 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.07 1.30 7.04 -51.93 -0.37 0.93 16 30 H 0.09 1.63 6.51 -51.93 -0.34 1.29 16 31 H 0.40 4.71 7.42 -40.82 -0.30 4.41 16 32 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 33 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 34 H 0.14 0.82 8.03 -52.49 -0.42 0.39 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.39 0.63 9.06 45.56 0.41 1.05 16 37 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.39 1.71 9.06 45.56 0.41 2.12 16 39 H 0.17 2.40 7.50 -52.49 -0.39 2.00 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.06 1.41 7.01 -51.93 -0.36 1.05 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -34.54 369.33 -6.62 -41.16 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.42 Total: 7.33 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.88 Total: -3.84 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.57 Total: -47.52 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.43 Total: -18.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -6.62 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451772407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.452 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds