Wall clock time and date at job start Tue Mar 31 2020 15:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46979 * 180.02562 * 7 6 4 9 9 C 1.38194 * 119.97105 * 259.72542 * 8 7 6 10 10 C 1.38155 * 120.11253 * 179.72745 * 9 8 7 11 11 C 1.38799 * 120.05087 * 0.54571 * 10 9 8 12 12 O 1.35891 * 120.02770 * 179.70682 * 11 10 9 13 13 C 1.38616 * 119.94185 * 359.72685 * 11 10 9 14 14 C 1.38650 * 119.89647 * 0.02562 * 13 11 10 15 15 O 1.35900 * 120.03128 * 180.02562 * 14 13 11 16 16 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 17 17 N 1.30448 * 108.01917 * 0.02562 * 16 3 2 18 18 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 19 19 C 1.46494 * 125.75336 * 0.23997 * 18 2 1 20 20 C 1.50700 * 109.47034 * 90.00525 * 19 18 2 21 21 H 1.08000 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00281 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00059 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00448 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46888 * 89.99706 * 24 22 20 26 26 H 1.48496 * 109.47230 * 210.00192 * 24 22 20 27 27 H 1.48499 * 109.46619 * 329.99846 * 24 22 20 28 28 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 29 29 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 30 30 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 31 31 H 0.97001 * 120.00147 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.47456 * 299.99853 * 7 6 4 33 33 H 1.08993 * 109.47342 * 60.00310 * 7 6 4 34 34 H 1.07998 * 119.94699 * 0.02562 * 9 8 7 35 35 H 1.07993 * 119.97920 * 180.25102 * 10 9 8 36 36 H 0.96708 * 114.00138 * 270.01867 * 12 11 10 37 37 H 1.08006 * 120.05178 * 180.02562 * 13 11 10 38 38 H 0.96699 * 113.99031 * 269.97669 * 15 14 13 39 39 H 1.07998 * 125.98994 * 179.97438 * 16 3 2 40 40 H 1.09003 * 109.46965 * 209.99756 * 19 18 2 41 41 H 1.09000 * 109.47680 * 330.00516 * 19 18 2 42 42 H 0.96997 * 120.00149 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 6 3.5716 5.8115 -0.0080 9 6 3.9925 6.3989 1.1700 10 6 5.1022 7.2218 1.1763 11 6 5.7905 7.4696 -0.0033 12 8 6.8784 8.2838 0.0024 13 6 5.3669 6.8860 -1.1871 14 6 4.2560 6.0564 -1.1899 15 8 3.8387 5.4824 -2.3489 16 6 3.6591 0.6499 0.0063 17 7 3.6340 -0.6543 0.0092 18 7 2.3017 -1.0822 0.0059 19 6 1.8501 -2.4757 0.0085 20 6 1.7002 -2.9579 -1.4114 21 1 1.9190 -2.2926 -2.2335 22 6 1.2836 -4.2483 -1.6610 23 7 1.0177 -5.0587 -0.6599 24 14 1.0971 -4.8457 -3.4211 25 1 2.3797 -5.4349 -3.8823 26 1 0.0286 -5.8750 -3.4838 27 1 0.7346 -3.7020 -4.2961 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 3.7461 3.2974 -0.0002 32 1 1.7694 5.1014 -0.9030 33 1 1.7621 5.1059 0.8769 34 1 3.4559 6.2105 2.0881 35 1 5.4315 7.6765 2.0988 36 1 6.6729 9.2160 -0.1530 37 1 5.9015 7.0772 -2.1059 38 1 3.1978 6.0129 -2.8418 39 1 4.5449 1.2677 0.0075 40 1 2.5830 -3.0942 0.5267 41 1 0.8897 -2.5456 0.5192 42 1 0.7250 -5.9666 -0.8354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451772407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:02 Heat of formation + Delta-G solvation = -58.100287 kcal Electronic energy + Delta-G solvation = -26984.970229 eV Core-core repulsion = 22930.620034 eV Total energy + Delta-G solvation = -4054.350195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30775 -41.23285 -39.96040 -38.80661 -36.96269 -35.83667 -35.49016 -33.83556 -32.77451 -31.70569 -30.87756 -29.20356 -28.25620 -26.55897 -25.24494 -23.79834 -23.39989 -22.47654 -21.24538 -20.56084 -19.99306 -18.86879 -18.57220 -18.02557 -17.41008 -17.28458 -16.81190 -16.45246 -16.36533 -16.23246 -15.96627 -15.51232 -15.31381 -14.95922 -14.62312 -14.43883 -14.33380 -14.05129 -13.87315 -13.68319 -13.57754 -13.40563 -13.08346 -12.96333 -12.93775 -12.71201 -12.70247 -12.31287 -11.85664 -11.73680 -11.65651 -11.57856 -10.84975 -10.76396 -10.26527 -10.07733 -9.85575 -9.51020 -9.41764 -8.38061 -6.54368 0.04313 0.25012 0.69821 1.32398 1.37074 1.38539 1.48686 1.67122 2.26948 2.32726 2.56828 2.70629 2.94006 3.09110 3.44668 3.68673 3.75404 3.79364 3.85631 4.13174 4.15001 4.25159 4.36698 4.50054 4.60712 4.65987 4.68774 4.79816 4.86933 4.91195 4.94378 5.08310 5.17038 5.19406 5.37624 5.45874 5.48797 5.53622 5.67210 5.71089 5.74723 6.05501 6.54569 6.62739 6.78279 6.84598 6.86196 7.16563 7.37228 8.69837 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.002255 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.840535 B =12414.882107 C =12672.832575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.145 3.855 3 C -0.330 4.330 4 C 0.607 3.393 5 O -0.582 6.582 6 N -0.709 5.709 7 C 0.176 3.824 8 C -0.150 4.150 9 C -0.063 4.063 10 C -0.160 4.160 11 C 0.129 3.871 12 O -0.509 6.509 13 C -0.187 4.187 14 C 0.141 3.859 15 O -0.505 6.505 16 C 0.078 3.922 17 N -0.337 5.337 18 N -0.338 5.338 19 C 0.267 3.733 20 C -0.555 4.555 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.916 5.916 24 Si 0.972 3.028 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.407 0.593 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.414 0.586 37 H 0.140 0.860 38 H 0.410 0.590 39 H 0.219 0.781 40 H 0.031 0.969 41 H 0.052 0.948 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 29.102 1.914 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.009 3.991 3 C -0.345 4.345 4 C 0.396 3.604 5 O -0.464 6.464 6 N -0.360 5.360 7 C 0.053 3.947 8 C -0.151 4.151 9 C -0.082 4.082 10 C -0.178 4.178 11 C 0.084 3.916 12 O -0.323 6.323 13 C -0.206 4.206 14 C 0.095 3.905 15 O -0.318 6.318 16 C -0.109 4.109 17 N -0.157 5.157 18 N -0.115 5.115 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.069 0.931 22 C -0.178 4.178 23 N -0.554 5.554 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.242 0.758 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.274 0.726 37 H 0.158 0.842 38 H 0.270 0.730 39 H 0.236 0.764 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.272 26.925 2.234 27.736 hybrid contribution -0.476 0.584 -1.125 1.354 sum 5.796 27.509 1.109 28.135 Atomic orbital electron populations 1.20552 0.85701 1.04101 1.03928 1.21989 0.96003 0.86650 0.94430 1.19972 0.93116 0.93248 1.28197 1.17060 0.85023 0.83695 0.74604 1.90671 1.17726 1.84667 1.53327 1.45589 1.09705 1.05088 1.75576 1.19939 0.93486 0.78385 1.02864 1.20191 0.98849 1.01997 0.94107 1.21104 0.95394 0.94176 0.97509 1.21649 0.95826 1.01515 0.98855 1.18416 0.86923 0.94160 0.92062 1.84779 1.29643 1.23469 1.94445 1.21796 0.98647 1.00580 0.99602 1.18202 0.93465 0.92678 0.86127 1.84839 1.65075 1.48371 1.33558 1.24413 0.97668 0.91621 0.97192 1.77087 0.98437 1.14343 1.25809 1.49107 1.03322 1.07793 1.51284 1.19377 0.95327 0.72318 0.98158 1.21383 1.47930 0.98473 0.91543 0.93124 1.25734 0.93818 0.95951 1.02300 1.69994 1.44833 1.07623 1.32965 0.85346 0.78348 0.78211 0.78558 1.19844 1.19484 1.19461 0.89938 0.91016 0.87836 0.75765 0.91191 0.90335 0.83192 0.83240 0.72561 0.84246 0.73037 0.76442 0.95080 0.93005 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.16 9.56 71.24 0.68 -2.48 16 2 C 0.15 6.11 7.01 42.14 0.30 6.40 16 3 C -0.33 -12.18 6.13 -20.15 -0.12 -12.30 16 4 C 0.61 19.72 7.81 86.66 0.68 20.40 16 5 O -0.58 -21.60 14.84 -4.04 -0.06 -21.66 16 6 N -0.71 -16.88 5.54 -470.11 -2.60 -19.48 16 7 C 0.18 3.35 5.46 85.63 0.47 3.82 16 8 C -0.15 -2.30 5.26 -19.75 -0.10 -2.40 16 9 C -0.06 -0.78 9.66 22.24 0.21 -0.57 16 10 C -0.16 -1.86 9.98 22.38 0.22 -1.63 16 11 C 0.13 1.70 6.70 22.49 0.15 1.85 16 12 O -0.51 -5.66 13.50 -92.32 -1.25 -6.91 16 13 C -0.19 -2.70 9.93 22.46 0.22 -2.48 16 14 C 0.14 2.21 6.67 22.49 0.15 2.36 16 15 O -0.51 -8.16 12.73 -92.42 -1.18 -9.34 16 16 C 0.08 2.74 11.50 85.65 0.99 3.72 16 17 N -0.34 -15.02 12.50 -56.28 -0.70 -15.73 16 18 N -0.34 -16.00 3.56 -336.70 -1.20 -17.20 16 19 C 0.27 14.02 5.97 85.63 0.51 14.53 16 20 C -0.56 -31.08 9.39 25.60 0.24 -30.84 16 21 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 22 C 0.02 1.28 5.46 84.65 0.46 1.74 16 23 N -0.92 -51.71 13.29 21.45 0.28 -51.42 16 24 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.07 2.63 7.04 -2.39 -0.02 2.62 16 30 H 0.10 3.61 6.51 -2.39 -0.02 3.59 16 31 H 0.41 8.52 7.42 -92.71 -0.69 7.83 16 32 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16 33 H 0.08 1.45 8.00 -2.39 -0.02 1.43 16 34 H 0.15 1.37 8.03 -2.91 -0.02 1.35 16 35 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.41 0.33 9.06 -74.05 -0.67 -0.34 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.41 3.05 9.06 -74.06 -0.67 2.38 16 39 H 0.22 5.35 7.50 -2.91 -0.02 5.33 16 40 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 2.71 7.01 -2.39 -0.02 2.70 16 42 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -74.33 369.33 -0.54 -74.87 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.92 Total: 19.52 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.06 Total: 2.13 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.22 Total: -103.83 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -2.48 Total: -37.91 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.33 -0.54 -74.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451772407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.771 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds