Wall clock time and date at job start Tue Mar 31 2020 15:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36068 * 117.00054 * 2 1 4 4 C 1.38556 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.06864 * 179.70631 * 4 3 2 6 6 C 1.38854 * 120.07194 * 0.55287 * 5 4 3 7 7 N 1.40056 * 119.99423 * 179.72438 * 6 5 4 8 8 C 1.34778 * 119.99647 * 214.81122 * 7 6 5 9 9 O 1.21617 * 120.00078 * 355.66165 * 8 7 6 10 10 C 1.47418 * 119.99929 * 175.65689 * 8 7 6 11 11 C 1.41293 * 126.41476 * 359.68933 * 10 8 7 12 12 N 1.30443 * 108.02324 * 179.87803 * 11 10 8 13 13 N 1.39936 * 108.89935 * 0.38982 * 12 11 10 14 14 C 1.46506 * 125.75317 * 179.77737 * 13 12 11 15 15 C 1.50706 * 109.46705 * 269.96923 * 14 13 12 16 16 H 1.07999 * 119.99728 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00141 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46950 * 90.00336 * 19 17 15 21 21 H 1.48505 * 109.46939 * 209.99796 * 19 17 15 22 22 H 1.48489 * 109.47204 * 330.00092 * 19 17 15 23 23 C 1.34270 * 108.49268 * 359.74770 * 13 12 11 24 24 C 1.50702 * 126.29077 * 180.02562 * 23 13 12 25 25 C 1.38821 * 120.00438 * 359.45036 * 6 5 4 26 26 C 1.38498 * 119.93011 * 0.26887 * 25 6 5 27 27 O 1.35984 * 120.03588 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.46578 * 60.00927 * 1 2 3 29 29 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47272 * 300.00945 * 1 2 3 31 31 H 1.07999 * 119.96331 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.96263 * 180.27892 * 5 4 3 33 33 H 0.96993 * 120.00129 * 35.09365 * 7 6 5 34 34 H 1.08002 * 125.98780 * 0.03715 * 11 10 8 35 35 H 1.08996 * 109.47192 * 29.96463 * 14 13 12 36 36 H 1.08991 * 109.47078 * 149.97202 * 14 13 12 37 37 H 0.96996 * 120.00412 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47135 * 269.97541 * 24 23 13 39 39 H 1.08998 * 109.47043 * 29.97973 * 24 23 13 40 40 H 1.08999 * 109.46891 * 149.97523 * 24 23 13 41 41 H 1.08004 * 120.03228 * 180.25401 * 25 6 5 42 42 H 0.96708 * 113.99666 * 90.00880 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6063 0.0067 6 6 3.3045 3.6824 0.0007 7 7 3.9372 4.9319 0.0011 8 6 5.0936 5.1019 -0.6700 9 8 5.6286 4.1524 -1.2097 10 6 5.7099 6.4387 -0.7497 11 6 5.2053 7.6301 -0.1821 12 7 6.0336 8.5961 -0.4688 13 7 7.0877 8.0785 -1.2299 14 6 8.2215 8.8440 -1.7541 15 6 7.8812 9.3709 -3.1245 16 1 6.9167 9.1573 -3.5609 17 6 8.8007 10.1265 -3.8205 18 7 9.9747 10.3878 -3.2883 19 14 8.3792 10.7790 -5.5192 20 1 7.7469 12.1168 -5.3928 21 1 9.6196 10.8923 -6.3278 22 1 7.4360 9.8469 -6.1875 23 6 6.8849 6.7619 -1.3982 24 6 7.7766 5.8117 -2.1553 25 6 4.0635 2.5201 0.0001 26 6 3.4364 1.2852 -0.0002 27 8 4.1778 0.1453 -0.0013 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 0.2137 2.3173 0.0014 32 1 1.3282 4.5111 0.0116 33 1 3.5452 5.6738 0.4877 34 1 4.2947 7.7240 0.3911 35 1 8.4360 9.6787 -1.0869 36 1 9.0966 8.1976 -1.8204 37 1 10.6218 10.9191 -3.7781 38 1 7.4640 5.7736 -3.1988 39 1 8.8086 6.1579 -2.0975 40 1 7.7022 4.8165 -1.7171 41 1 5.1420 2.5787 -0.0004 42 1 4.3927 -0.1850 0.8819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457506861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:52 Heat of formation + Delta-G solvation = -15.585214 kcal Electronic energy + Delta-G solvation = -27120.673729 eV Core-core repulsion = 23068.167127 eV Total energy + Delta-G solvation = -4052.506603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05993 -40.57407 -39.28251 -37.78407 -36.70049 -34.22048 -33.81299 -32.12822 -31.28300 -30.28448 -29.37197 -27.73637 -27.01331 -26.57196 -23.68978 -23.03511 -22.72361 -21.63498 -19.94995 -19.31340 -18.73070 -17.96160 -17.39795 -16.84064 -16.55202 -16.29270 -15.90647 -15.26108 -15.06450 -14.77737 -14.61505 -14.39074 -14.24959 -14.17698 -13.74295 -13.34578 -13.06015 -12.74091 -12.66975 -12.46647 -12.30413 -12.15215 -11.84020 -11.63542 -11.52707 -11.43003 -11.15504 -10.91434 -10.87593 -10.39475 -10.25152 -9.97961 -9.93234 -9.49972 -8.93050 -8.73843 -8.66541 -8.11224 -7.74802 -6.36518 -4.44579 1.02556 1.14768 2.08836 2.69652 2.94406 3.08164 3.16744 3.23293 3.27421 3.40198 3.42967 3.80047 4.09787 4.22026 4.57676 4.73711 4.84325 4.91561 4.94831 5.01677 5.08310 5.15346 5.19273 5.37353 5.44433 5.64294 5.70064 5.71336 5.83279 5.98749 6.08152 6.16753 6.27568 6.40917 6.49984 6.72132 6.76607 6.86486 7.02605 7.07949 7.49996 7.52516 7.61949 7.71659 7.73746 8.28468 8.40694 8.60602 9.22573 10.71698 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002231 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.940502 B =12546.345785 C =12643.042897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.079 3.921 4 C -0.176 4.176 5 C -0.118 4.118 6 C 0.141 3.859 7 N -0.675 5.675 8 C 0.604 3.396 9 O -0.535 6.535 10 C -0.335 4.335 11 C 0.059 3.941 12 N -0.293 5.293 13 N -0.312 5.312 14 C 0.250 3.750 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.171 3.829 24 C -0.095 4.095 25 C -0.109 4.109 26 C 0.093 3.907 27 O -0.484 6.484 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.410 0.590 34 H 0.177 0.823 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.156 0.844 42 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.417 -16.346 10.026 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.033 3.967 4 C -0.195 4.195 5 C -0.139 4.139 6 C 0.046 3.954 7 N -0.320 5.320 8 C 0.396 3.604 9 O -0.413 6.413 10 C -0.351 4.351 11 C -0.128 4.128 12 N -0.113 5.113 13 N -0.089 5.089 14 C 0.133 3.867 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.033 3.967 24 C -0.153 4.153 25 C -0.130 4.130 26 C 0.047 3.953 27 O -0.292 6.292 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.246 0.754 34 H 0.194 0.806 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.173 0.827 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.365 -15.607 9.049 23.697 hybrid contribution -0.892 0.260 -0.268 0.967 sum -16.257 -15.347 8.781 24.020 Atomic orbital electron populations 1.23053 0.78813 1.03835 1.01227 1.86155 1.20909 1.26285 1.89043 1.19412 0.91677 0.84847 1.00773 1.20873 0.99867 0.91263 1.07513 1.20731 0.92525 0.97886 1.02775 1.17442 0.90884 0.85306 1.01750 1.43290 1.25039 1.10881 1.52761 1.17438 0.78960 0.87686 0.76309 1.90714 1.61874 1.41900 1.46768 1.19518 1.02313 0.93886 1.19358 1.23734 0.99256 0.89963 0.99884 1.77156 0.98240 1.22730 1.13138 1.49411 1.18812 1.05215 1.35423 1.19889 0.79679 0.91894 0.95203 1.21232 1.02074 1.34436 1.00164 0.91654 1.24924 0.94553 0.95298 0.98885 1.69910 1.06093 1.38134 1.38497 0.86313 0.78072 0.79442 0.82656 1.20235 1.20754 1.19587 1.21496 0.94661 0.86239 0.94265 1.20599 0.97454 0.97319 0.99884 1.21464 1.02160 0.89368 0.99976 1.17543 0.85896 0.86430 1.05415 1.84913 1.72025 1.39233 1.33061 0.92706 0.88353 0.92776 0.84824 0.85061 0.75435 0.80639 0.92425 0.92455 0.92070 0.89658 0.90710 0.88758 0.82658 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.30 10.28 -34.56 -0.36 -3.66 16 3 C 0.08 0.90 6.70 -39.12 -0.26 0.64 16 4 C -0.18 -1.66 9.03 -39.49 -0.36 -2.02 16 5 C -0.12 -1.16 9.96 -39.37 -0.39 -1.55 16 6 C 0.14 1.72 6.30 -83.66 -0.53 1.19 16 7 N -0.67 -8.18 5.33 -10.81 -0.06 -8.24 16 8 C 0.60 9.64 7.66 -12.52 -0.10 9.54 16 9 O -0.54 -9.80 12.28 5.26 0.06 -9.73 16 10 C -0.34 -5.85 6.13 -105.07 -0.64 -6.49 16 11 C 0.06 0.97 11.50 -16.98 -0.20 0.77 16 12 N -0.29 -6.08 12.50 30.86 0.39 -5.70 16 13 N -0.31 -6.87 3.56 -57.77 -0.21 -7.07 16 14 C 0.25 6.12 5.97 -5.19 -0.03 6.09 16 15 C -0.54 -14.39 9.39 -34.44 -0.32 -14.71 16 16 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.34 13.29 55.43 0.74 -23.61 16 19 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.17 3.38 7.01 -81.59 -0.57 2.81 16 24 C -0.09 -1.67 9.57 36.01 0.34 -1.32 16 25 C -0.11 -1.46 8.63 -39.27 -0.34 -1.80 16 26 C 0.09 1.18 6.71 -39.15 -0.26 0.92 16 27 O -0.48 -5.82 13.28 -34.30 -0.46 -6.27 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.41 3.67 7.79 -40.82 -0.32 3.35 16 34 H 0.18 1.97 7.51 -52.49 -0.39 1.58 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.06 1.39 7.02 -51.93 -0.36 1.02 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.07 1.28 7.05 -51.93 -0.37 0.92 16 40 H 0.09 1.58 6.50 -51.93 -0.34 1.24 16 41 H 0.16 2.33 6.22 -52.48 -0.33 2.00 16 42 H 0.39 2.68 9.07 45.56 0.41 3.09 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -33.29 362.56 -6.26 -39.55 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.06 Total: 6.71 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.76 Total: -3.10 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.86 Total: -44.62 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.75 Total: -19.66 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.29 -6.26 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457506861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.964 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds