Wall clock time and date at job start Tue Mar 31 2020 15:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36068 * 117.00054 * 2 1 4 4 C 1.38556 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.06864 * 179.70631 * 4 3 2 6 6 C 1.38854 * 120.07194 * 0.55287 * 5 4 3 7 7 N 1.40056 * 119.99423 * 179.72438 * 6 5 4 8 8 C 1.34778 * 119.99647 * 214.81122 * 7 6 5 9 9 O 1.21617 * 120.00078 * 355.66165 * 8 7 6 10 10 C 1.47418 * 119.99929 * 175.65689 * 8 7 6 11 11 C 1.41293 * 126.41476 * 359.68933 * 10 8 7 12 12 N 1.30443 * 108.02324 * 179.87803 * 11 10 8 13 13 N 1.39936 * 108.89935 * 0.38982 * 12 11 10 14 14 C 1.46506 * 125.75317 * 179.77737 * 13 12 11 15 15 C 1.50706 * 109.46705 * 269.96923 * 14 13 12 16 16 H 1.07999 * 119.99728 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00141 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46950 * 90.00336 * 19 17 15 21 21 H 1.48505 * 109.46939 * 209.99796 * 19 17 15 22 22 H 1.48489 * 109.47204 * 330.00092 * 19 17 15 23 23 C 1.34270 * 108.49268 * 359.74770 * 13 12 11 24 24 C 1.50702 * 126.29077 * 180.02562 * 23 13 12 25 25 C 1.38821 * 120.00438 * 359.45036 * 6 5 4 26 26 C 1.38498 * 119.93011 * 0.26887 * 25 6 5 27 27 O 1.35984 * 120.03588 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.46578 * 60.00927 * 1 2 3 29 29 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47272 * 300.00945 * 1 2 3 31 31 H 1.07999 * 119.96331 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.96263 * 180.27892 * 5 4 3 33 33 H 0.96993 * 120.00129 * 35.09365 * 7 6 5 34 34 H 1.08002 * 125.98780 * 0.03715 * 11 10 8 35 35 H 1.08996 * 109.47192 * 29.96463 * 14 13 12 36 36 H 1.08991 * 109.47078 * 149.97202 * 14 13 12 37 37 H 0.96996 * 120.00412 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47135 * 269.97541 * 24 23 13 39 39 H 1.08998 * 109.47043 * 29.97973 * 24 23 13 40 40 H 1.08999 * 109.46891 * 149.97523 * 24 23 13 41 41 H 1.08004 * 120.03228 * 180.25401 * 25 6 5 42 42 H 0.96708 * 113.99666 * 90.00880 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6063 0.0067 6 6 3.3045 3.6824 0.0007 7 7 3.9372 4.9319 0.0011 8 6 5.0936 5.1019 -0.6700 9 8 5.6286 4.1524 -1.2097 10 6 5.7099 6.4387 -0.7497 11 6 5.2053 7.6301 -0.1821 12 7 6.0336 8.5961 -0.4688 13 7 7.0877 8.0785 -1.2299 14 6 8.2215 8.8440 -1.7541 15 6 7.8812 9.3709 -3.1245 16 1 6.9167 9.1573 -3.5609 17 6 8.8007 10.1265 -3.8205 18 7 9.9747 10.3878 -3.2883 19 14 8.3792 10.7790 -5.5192 20 1 7.7469 12.1168 -5.3928 21 1 9.6196 10.8923 -6.3278 22 1 7.4360 9.8469 -6.1875 23 6 6.8849 6.7619 -1.3982 24 6 7.7766 5.8117 -2.1553 25 6 4.0635 2.5201 0.0001 26 6 3.4364 1.2852 -0.0002 27 8 4.1778 0.1453 -0.0013 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 0.2137 2.3173 0.0014 32 1 1.3282 4.5111 0.0116 33 1 3.5452 5.6738 0.4877 34 1 4.2947 7.7240 0.3911 35 1 8.4360 9.6787 -1.0869 36 1 9.0966 8.1976 -1.8204 37 1 10.6218 10.9191 -3.7781 38 1 7.4640 5.7736 -3.1988 39 1 8.8086 6.1579 -2.0975 40 1 7.7022 4.8165 -1.7171 41 1 5.1420 2.5787 -0.0004 42 1 4.3927 -0.1850 0.8819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457506861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:52 Heat of formation + Delta-G solvation = -39.656187 kcal Electronic energy + Delta-G solvation = -27121.717525 eV Core-core repulsion = 23068.167127 eV Total energy + Delta-G solvation = -4053.550398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41821 -41.54708 -40.35899 -38.62837 -37.66673 -35.84799 -35.12505 -33.79966 -32.80289 -31.15676 -30.34947 -29.05538 -28.32427 -27.68289 -25.44403 -24.11976 -23.72923 -22.74118 -21.24702 -20.67032 -19.70302 -18.88234 -18.78899 -18.55457 -17.55289 -17.26886 -16.81342 -16.59127 -16.46522 -16.11622 -15.72229 -15.64165 -15.46995 -15.05718 -14.87373 -14.72009 -14.27828 -14.11840 -13.87645 -13.69445 -13.60030 -13.49483 -13.09915 -13.03364 -12.95731 -12.71129 -12.32045 -12.29704 -12.15324 -11.86584 -11.82452 -11.64458 -10.90778 -10.76971 -10.73854 -10.28773 -9.80858 -9.56820 -8.66319 -8.38519 -6.54834 0.17740 0.24937 0.70429 1.30585 1.36964 1.38431 1.48205 1.61280 2.15971 2.32042 2.35687 2.44110 2.70175 2.93707 3.27538 3.70709 3.71968 3.88240 4.03053 4.11341 4.20121 4.26387 4.42909 4.46158 4.50102 4.58098 4.60963 4.74320 4.78088 4.84600 4.88959 4.90495 5.06650 5.14825 5.22537 5.30861 5.40735 5.48488 5.65045 5.73918 5.83351 6.01358 6.34490 6.50597 6.53878 6.82301 6.88591 7.16205 7.23945 8.69235 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002231 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.940502 B =12546.345785 C =12643.042897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.104 4.104 6 C 0.121 3.879 7 N -0.654 5.654 8 C 0.605 3.395 9 O -0.563 6.563 10 C -0.330 4.330 11 C 0.083 3.917 12 N -0.334 5.334 13 N -0.337 5.337 14 C 0.266 3.734 15 C -0.555 4.555 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.916 5.916 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.270 1.270 23 C 0.149 3.851 24 C -0.088 4.088 25 C -0.128 4.128 26 C 0.073 3.927 27 O -0.502 6.502 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.427 0.573 34 H 0.232 0.768 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.274 0.726 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 -16.742 10.272 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.029 3.971 4 C -0.187 4.187 5 C -0.124 4.124 6 C 0.027 3.973 7 N -0.300 5.300 8 C 0.396 3.604 9 O -0.443 6.443 10 C -0.345 4.345 11 C -0.104 4.104 12 N -0.154 5.154 13 N -0.114 5.114 14 C 0.148 3.852 15 C -0.593 4.593 16 H 0.070 0.930 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.195 1.195 23 C 0.013 3.987 24 C -0.146 4.146 25 C -0.149 4.149 26 C 0.028 3.972 27 O -0.313 6.313 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.266 0.734 34 H 0.248 0.752 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -18.858 -16.020 9.338 26.447 hybrid contribution 0.019 0.197 -0.234 0.306 sum -18.839 -15.823 9.104 26.233 Atomic orbital electron populations 1.23385 0.76452 1.05545 1.02514 1.86133 1.23390 1.26138 1.88855 1.19540 0.91349 0.85960 1.00226 1.21263 1.01444 0.90265 1.05758 1.21064 0.91388 0.99406 1.00547 1.17596 0.91939 0.84494 1.03316 1.42976 1.23636 1.11693 1.51686 1.17247 0.79897 0.86569 0.76639 1.90715 1.62959 1.42436 1.48174 1.19752 1.01446 0.95076 1.18270 1.24579 0.99543 0.88226 0.98024 1.77111 0.99014 1.24654 1.14579 1.49117 1.19212 1.05776 1.37261 1.19386 0.80744 0.91182 0.93917 1.21382 1.01620 1.34991 1.01289 0.92987 1.25727 0.94362 0.95319 1.02417 1.69992 1.06858 1.38609 1.39947 0.85352 0.78110 0.78735 0.78313 1.19724 1.19685 1.19496 1.21949 0.96006 0.85720 0.95009 1.20564 0.97091 0.97351 0.99580 1.21343 1.01211 0.90635 1.01673 1.17692 0.86907 0.86178 1.06463 1.84845 1.72293 1.39307 1.34905 0.91789 0.86697 0.90930 0.81455 0.81685 0.73380 0.75158 0.94890 0.93148 0.91661 0.89958 0.90958 0.87996 0.85180 0.74011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.38 10.28 -80.36 -0.83 -7.21 16 3 C 0.08 1.57 6.70 22.57 0.15 1.73 16 4 C -0.17 -2.56 9.03 22.33 0.20 -2.36 16 5 C -0.10 -1.64 9.96 22.40 0.22 -1.42 16 6 C 0.12 2.70 6.30 38.11 0.24 2.94 16 7 N -0.65 -14.32 5.33 -306.36 -1.63 -15.95 16 8 C 0.61 18.72 7.66 86.66 0.66 19.38 16 9 O -0.56 -20.81 12.28 -4.09 -0.05 -20.86 16 10 C -0.33 -11.23 6.13 -20.15 -0.12 -11.35 16 11 C 0.08 2.57 11.50 85.65 0.99 3.55 16 12 N -0.33 -13.81 12.50 -56.27 -0.70 -14.51 16 13 N -0.34 -15.22 3.56 -336.68 -1.20 -16.42 16 14 C 0.27 13.60 5.97 85.63 0.51 14.11 16 15 C -0.55 -30.33 9.39 25.60 0.24 -30.09 16 16 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 17 C 0.02 1.25 5.46 84.65 0.46 1.71 16 18 N -0.92 -51.04 13.29 21.45 0.28 -50.75 16 19 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.15 6.00 7.01 42.14 0.30 6.30 16 24 C -0.09 -3.22 9.57 71.24 0.68 -2.53 16 25 C -0.13 -3.43 8.63 22.47 0.19 -3.23 16 26 C 0.07 1.84 6.71 22.55 0.15 1.99 16 27 O -0.50 -12.32 13.28 -79.41 -1.05 -13.37 16 28 H 0.06 0.47 7.66 -2.39 -0.02 0.46 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 31 H 0.17 1.37 6.29 -2.91 -0.02 1.35 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.43 6.01 7.79 -92.71 -0.72 5.29 16 34 H 0.23 4.13 7.51 -2.91 -0.02 4.11 16 35 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 2.58 7.02 -2.39 -0.02 2.57 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.08 3.01 8.14 -2.39 -0.02 3.00 16 39 H 0.07 2.62 7.05 -2.39 -0.02 2.60 16 40 H 0.10 3.53 6.50 -2.39 -0.02 3.51 16 41 H 0.13 4.10 6.22 -2.91 -0.02 4.08 16 42 H 0.40 5.83 9.07 -74.05 -0.67 5.15 16 Total: -1.00 -74.92 362.56 2.54 -72.38 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.29 Total: 20.14 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 5.99 Total: 1.98 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.25 Total: -97.62 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.93 Total: -41.44 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.92 2.54 -72.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457506861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.723 kcal (2) G-P(sol) polarization free energy of solvation -74.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds