Wall clock time and date at job start Tue Mar 31 2020 16:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29877 * 124.85119 * 2 1 4 4 C 1.36116 * 108.81613 * 179.97438 * 3 2 1 5 5 C 1.39616 * 133.73863 * 180.02562 * 4 3 2 6 6 C 1.36598 * 119.93422 * 179.97438 * 5 4 3 7 7 C 1.39299 * 120.49866 * 359.97438 * 6 5 4 8 8 N 1.40018 * 119.83968 * 179.97438 * 7 6 5 9 9 C 1.34772 * 119.99632 * 146.65602 * 8 7 6 10 10 O 1.21594 * 120.00318 * 354.67747 * 9 8 7 11 11 N 1.34776 * 120.00086 * 174.67715 * 9 8 7 12 12 C 1.47024 * 125.64723 * 0.04414 * 11 9 8 13 13 C 1.54320 * 107.27601 * 181.02090 * 12 11 9 14 14 C 1.55162 * 102.93801 * 22.19075 * 13 12 11 15 15 O 1.42898 * 111.00262 * 82.57647 * 14 13 12 16 16 C 1.50702 * 111.03619 * 206.40975 * 14 13 12 17 17 H 1.08000 * 120.00224 * 356.79392 * 16 14 13 18 18 C 1.37878 * 119.99906 * 176.79978 * 16 14 13 19 19 N 1.31520 * 119.99953 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99999 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47325 * 89.99572 * 20 18 16 22 22 H 1.48494 * 109.47225 * 209.99977 * 20 18 16 23 23 H 1.48503 * 109.47216 * 329.99758 * 20 18 16 24 24 C 1.47418 * 125.65370 * 179.97438 * 11 9 8 25 25 C 1.38539 * 120.31484 * 0.25300 * 7 6 5 26 26 C 1.38609 * 119.68027 * 359.49900 * 25 7 6 27 27 O 1.34289 * 124.85851 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46561 * 90.03497 * 1 2 3 29 29 H 1.08999 * 109.46835 * 210.02833 * 1 2 3 30 30 H 1.08992 * 109.47748 * 330.03300 * 1 2 3 31 31 H 1.07996 * 120.03541 * 359.96920 * 5 4 3 32 32 H 1.08000 * 119.74720 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00026 * 326.65341 * 8 7 6 34 34 H 1.09004 * 109.88420 * 300.44395 * 12 11 9 35 35 H 1.09005 * 109.87873 * 61.60176 * 12 11 9 36 36 H 1.09000 * 110.72298 * 263.83457 * 13 12 11 37 37 H 1.08989 * 110.72230 * 140.55183 * 13 12 11 38 38 H 0.96705 * 114.00043 * 186.35272 * 15 14 13 39 39 H 0.96995 * 119.99183 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36444 * 37.07034 * 24 11 9 41 41 H 1.09003 * 110.46119 * 274.79715 * 24 11 9 42 42 H 1.07997 * 120.15531 * 179.74553 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2492 1.0658 0.0000 4 6 3.5574 0.6898 0.0006 5 6 4.7637 1.3927 0.0013 6 6 5.9486 0.7130 0.0023 7 6 5.9646 -0.6799 0.0031 8 7 7.1871 -1.3626 0.0036 9 6 7.2999 -2.5420 0.6459 10 8 6.3707 -2.9666 1.3053 11 7 8.4428 -3.2509 0.5574 12 6 9.6391 -2.8567 -0.2010 13 6 10.6803 -3.9832 -0.0326 14 6 9.8076 -5.2091 0.3456 15 8 9.2534 -5.8225 -0.8200 16 6 10.5971 -6.2065 1.1537 17 1 11.6456 -6.0352 1.3479 18 6 9.9809 -7.3379 1.6450 19 7 8.7040 -7.5463 1.4089 20 14 10.9594 -8.5738 2.6473 21 1 10.8882 -8.2119 4.0857 22 1 10.3916 -9.9316 2.4498 23 1 12.3764 -8.5604 2.2031 24 6 8.7009 -4.5493 1.2060 25 6 4.7768 -1.3929 -0.0023 26 6 3.5686 -0.7136 0.0019 27 8 2.2745 -1.1019 0.0005 28 1 -0.3632 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5133 31 1 4.7601 2.4726 0.0010 32 1 6.8800 1.2597 0.0024 33 1 7.9527 -0.9866 -0.4584 34 1 9.3877 -2.7387 -1.2550 35 1 10.0370 -1.9220 0.1941 36 1 11.3794 -3.7456 0.7691 37 1 11.2105 -4.1612 -0.9680 38 1 8.6242 -6.5318 -0.6298 39 1 8.2706 -8.3421 1.7549 40 1 7.7996 -5.1623 1.1998 41 1 9.0516 -4.4019 2.2275 42 1 4.7923 -2.4727 -0.0058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465035878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:05 Heat of formation + Delta-G solvation = -27.784826 kcal Electronic energy + Delta-G solvation = -27849.259804 eV Core-core repulsion = 23796.224186 eV Total energy + Delta-G solvation = -4053.035617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.25547 -40.36547 -38.44388 -37.17275 -35.03101 -34.43909 -33.96885 -32.24587 -31.42290 -30.72026 -29.98726 -28.05218 -27.33866 -25.10483 -23.45229 -23.12749 -22.12298 -21.53028 -19.77749 -19.68227 -18.69690 -17.77501 -17.20588 -17.05798 -16.85922 -16.27296 -15.42826 -15.17580 -14.74924 -14.56665 -14.26148 -14.18954 -13.92494 -13.55895 -13.41902 -13.40214 -13.11751 -12.87981 -12.64797 -12.57570 -12.24285 -11.81369 -11.70634 -11.62966 -11.37476 -11.08852 -10.90285 -10.70166 -10.63008 -10.51843 -10.26434 -9.98175 -9.73653 -9.46531 -8.88613 -8.74193 -8.46062 -8.05948 -7.73326 -6.33055 -4.42490 0.64182 1.16465 2.28604 2.35998 2.86234 3.18136 3.26080 3.28399 3.34474 3.68279 3.73290 4.15786 4.25162 4.49335 4.82084 4.83572 4.93868 4.97974 5.04955 5.14769 5.28172 5.33132 5.39231 5.52327 5.63825 5.73311 5.86751 5.91144 5.95073 6.02419 6.10771 6.27086 6.34845 6.40767 6.60943 6.76747 6.77633 6.80123 7.08584 7.21973 7.39999 7.54823 7.69386 7.96153 8.23627 8.60835 8.81505 9.25788 9.35121 10.74458 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.002605 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.848113 B =10745.730920 C =11627.225698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.234 3.766 3 N -0.478 5.478 4 C -0.005 4.005 5 C -0.041 4.041 6 C -0.144 4.144 7 C 0.206 3.794 8 N -0.685 5.685 9 C 0.712 3.288 10 O -0.576 6.576 11 N -0.620 5.620 12 C 0.100 3.900 13 C -0.116 4.116 14 C 0.250 3.750 15 O -0.582 6.582 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.109 3.891 25 C -0.103 4.103 26 C 0.036 3.964 27 O -0.213 6.213 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.409 0.591 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.383 0.617 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 15.888 -4.393 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.022 3.978 3 N -0.208 5.208 4 C -0.117 4.117 5 C -0.061 4.061 6 C -0.165 4.165 7 C 0.109 3.891 8 N -0.334 5.334 9 C 0.415 3.585 10 O -0.453 6.453 11 N -0.355 5.355 12 C -0.023 4.023 13 C -0.154 4.154 14 C 0.209 3.791 15 O -0.392 6.392 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.531 5.531 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.012 4.012 25 C -0.125 4.125 26 C -0.015 4.015 27 O -0.104 6.104 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.245 0.755 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.975 16.419 -4.158 19.168 hybrid contribution 0.767 -1.622 0.705 1.928 sum -8.208 14.797 -3.453 17.270 Atomic orbital electron populations 1.20365 0.81096 1.05437 1.04970 1.26374 0.96560 0.78397 0.96448 1.70535 1.00994 1.29025 1.20270 1.19789 0.92126 0.91290 1.08500 1.19721 0.88089 0.99937 0.98330 1.20510 0.98687 0.91886 1.05461 1.17009 0.84542 0.90135 0.97422 1.42741 1.11634 1.22301 1.56675 1.15526 0.83004 0.79787 0.80207 1.90937 1.38597 1.70192 1.45560 1.47996 1.12145 1.23415 1.51978 1.22039 0.86625 0.98285 0.95377 1.22599 0.96598 0.94030 1.02135 1.19624 0.87893 0.88704 0.82902 1.86092 1.64368 1.55009 1.33695 1.21448 0.96859 1.05601 1.33721 0.91442 1.25085 0.94978 0.97899 0.95255 1.69653 1.09779 1.28224 1.45469 0.86385 0.80131 0.80144 0.80148 1.20404 1.20972 1.19674 1.23295 1.01919 0.79684 0.96317 1.19764 0.86218 1.01717 1.04783 1.19947 0.83588 0.93946 1.03979 1.84498 1.15336 1.36069 1.74525 0.88550 0.88947 0.87861 0.84381 0.84247 0.75488 0.92223 0.92781 0.90271 0.90550 0.76575 0.91894 0.89618 0.92064 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.23 2.88 8.24 -13.10 -0.11 2.77 16 3 N -0.48 -6.72 11.34 -8.67 -0.10 -6.82 16 4 C -0.01 -0.07 7.24 -84.66 -0.61 -0.69 16 5 C -0.04 -0.49 10.04 -39.66 -0.40 -0.89 16 6 C -0.14 -1.63 9.88 -39.78 -0.39 -2.03 16 7 C 0.21 2.99 6.28 -83.61 -0.52 2.47 16 8 N -0.69 -10.00 5.30 -14.18 -0.08 -10.07 16 9 C 0.71 13.77 8.22 -86.92 -0.71 13.05 16 10 O -0.58 -13.29 14.29 5.28 0.08 -13.21 16 11 N -0.62 -12.07 3.33 -176.23 -0.59 -12.65 16 12 C 0.10 1.59 6.16 -3.06 -0.02 1.57 16 13 C -0.12 -2.14 6.13 -24.90 -0.15 -2.29 16 14 C 0.25 5.78 0.87 -89.61 -0.08 5.70 16 15 O -0.58 -14.38 13.15 -35.23 -0.46 -14.85 16 16 C -0.54 -13.54 8.26 -34.44 -0.28 -13.82 16 17 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 18 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 19 N -0.89 -23.35 10.72 55.43 0.59 -22.76 16 20 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 24 C 0.11 2.53 5.50 -2.52 -0.01 2.51 16 25 C -0.10 -1.71 8.66 -39.33 -0.34 -2.05 16 26 C 0.04 0.58 7.43 -38.65 -0.29 0.29 16 27 O -0.21 -3.20 10.77 3.49 0.04 -3.16 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.41 4.56 7.81 -40.82 -0.32 4.24 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 37 H 0.08 1.35 8.14 -51.94 -0.42 0.93 16 38 H 0.38 9.84 7.32 45.56 0.33 10.17 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.09 2.25 7.47 -51.93 -0.39 1.86 16 41 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 42 H 0.15 2.85 6.42 -52.49 -0.34 2.51 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -31.90 354.60 -8.31 -40.20 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -4.47 Total: 14.71 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -3.64 Total: 8.31 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.17 Total: -52.30 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.35 Total: -31.22 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.90 -8.31 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465035878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.416 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds