Wall clock time and date at job start Tue Mar 31 2020 16:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29877 * 124.85119 * 2 1 4 4 C 1.36116 * 108.81613 * 179.97438 * 3 2 1 5 5 C 1.39616 * 133.73863 * 180.02562 * 4 3 2 6 6 C 1.36598 * 119.93422 * 179.97438 * 5 4 3 7 7 C 1.39299 * 120.49866 * 359.97438 * 6 5 4 8 8 N 1.40018 * 119.83968 * 179.97438 * 7 6 5 9 9 C 1.34772 * 119.99632 * 146.65602 * 8 7 6 10 10 O 1.21594 * 120.00318 * 354.67747 * 9 8 7 11 11 N 1.34776 * 120.00086 * 174.67715 * 9 8 7 12 12 C 1.47024 * 125.64723 * 0.04414 * 11 9 8 13 13 C 1.54320 * 107.27601 * 181.02090 * 12 11 9 14 14 C 1.55162 * 102.93801 * 22.19075 * 13 12 11 15 15 O 1.42898 * 111.00262 * 82.57647 * 14 13 12 16 16 C 1.50702 * 111.03619 * 206.40975 * 14 13 12 17 17 H 1.08000 * 120.00224 * 356.79392 * 16 14 13 18 18 C 1.37878 * 119.99906 * 176.79978 * 16 14 13 19 19 N 1.31520 * 119.99953 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99999 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47325 * 89.99572 * 20 18 16 22 22 H 1.48494 * 109.47225 * 209.99977 * 20 18 16 23 23 H 1.48503 * 109.47216 * 329.99758 * 20 18 16 24 24 C 1.47418 * 125.65370 * 179.97438 * 11 9 8 25 25 C 1.38539 * 120.31484 * 0.25300 * 7 6 5 26 26 C 1.38609 * 119.68027 * 359.49900 * 25 7 6 27 27 O 1.34289 * 124.85851 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46561 * 90.03497 * 1 2 3 29 29 H 1.08999 * 109.46835 * 210.02833 * 1 2 3 30 30 H 1.08992 * 109.47748 * 330.03300 * 1 2 3 31 31 H 1.07996 * 120.03541 * 359.96920 * 5 4 3 32 32 H 1.08000 * 119.74720 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00026 * 326.65341 * 8 7 6 34 34 H 1.09004 * 109.88420 * 300.44395 * 12 11 9 35 35 H 1.09005 * 109.87873 * 61.60176 * 12 11 9 36 36 H 1.09000 * 110.72298 * 263.83457 * 13 12 11 37 37 H 1.08989 * 110.72230 * 140.55183 * 13 12 11 38 38 H 0.96705 * 114.00043 * 186.35272 * 15 14 13 39 39 H 0.96995 * 119.99183 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36444 * 37.07034 * 24 11 9 41 41 H 1.09003 * 110.46119 * 274.79715 * 24 11 9 42 42 H 1.07997 * 120.15531 * 179.74553 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2492 1.0658 0.0000 4 6 3.5574 0.6898 0.0006 5 6 4.7637 1.3927 0.0013 6 6 5.9486 0.7130 0.0023 7 6 5.9646 -0.6799 0.0031 8 7 7.1871 -1.3626 0.0036 9 6 7.2999 -2.5420 0.6459 10 8 6.3707 -2.9666 1.3053 11 7 8.4428 -3.2509 0.5574 12 6 9.6391 -2.8567 -0.2010 13 6 10.6803 -3.9832 -0.0326 14 6 9.8076 -5.2091 0.3456 15 8 9.2534 -5.8225 -0.8200 16 6 10.5971 -6.2065 1.1537 17 1 11.6456 -6.0352 1.3479 18 6 9.9809 -7.3379 1.6450 19 7 8.7040 -7.5463 1.4089 20 14 10.9594 -8.5738 2.6473 21 1 10.8882 -8.2119 4.0857 22 1 10.3916 -9.9316 2.4498 23 1 12.3764 -8.5604 2.2031 24 6 8.7009 -4.5493 1.2060 25 6 4.7768 -1.3929 -0.0023 26 6 3.5686 -0.7136 0.0019 27 8 2.2745 -1.1019 0.0005 28 1 -0.3632 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5133 31 1 4.7601 2.4726 0.0010 32 1 6.8800 1.2597 0.0024 33 1 7.9527 -0.9866 -0.4584 34 1 9.3877 -2.7387 -1.2550 35 1 10.0370 -1.9220 0.1941 36 1 11.3794 -3.7456 0.7691 37 1 11.2105 -4.1612 -0.9680 38 1 8.6242 -6.5318 -0.6298 39 1 8.2706 -8.3421 1.7549 40 1 7.7996 -5.1623 1.1998 41 1 9.0516 -4.4019 2.2275 42 1 4.7923 -2.4727 -0.0058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465035878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:04 Heat of formation + Delta-G solvation = -53.442503 kcal Electronic energy + Delta-G solvation = -27850.372404 eV Core-core repulsion = 23796.224186 eV Total energy + Delta-G solvation = -4054.148218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.30031 -41.78145 -39.83164 -38.62882 -36.18537 -36.13782 -35.19227 -34.20616 -32.35118 -31.99675 -31.24349 -29.64098 -28.50567 -26.85522 -24.64515 -24.42504 -23.33076 -22.55900 -21.50725 -21.05780 -19.92648 -19.15503 -18.88209 -18.29394 -17.92607 -17.49891 -17.03673 -16.87082 -16.27328 -16.14299 -15.50211 -15.42502 -15.03461 -14.81246 -14.67193 -14.63825 -14.15027 -14.12047 -13.83465 -13.66612 -13.49922 -13.32224 -13.26705 -12.86646 -12.83635 -12.56560 -12.49224 -12.33377 -12.24582 -12.09339 -11.77232 -11.40162 -11.23398 -11.04354 -10.66778 -10.33744 -9.93817 -9.58955 -8.94625 -8.26123 -6.42527 -0.40969 0.11678 1.17803 1.32459 1.41669 1.44055 1.53364 1.60314 1.95848 2.37377 2.58824 2.80741 2.90284 3.00612 3.45140 3.78078 3.88521 3.94680 3.99443 4.08601 4.16567 4.30757 4.33219 4.51012 4.60163 4.61720 4.66078 4.72949 4.78623 4.95782 5.01116 5.04204 5.07696 5.08523 5.17316 5.25762 5.35191 5.36987 5.45149 5.66484 5.75440 5.96491 6.08197 6.52038 6.64357 6.85100 7.27783 7.34593 7.35155 8.79359 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.002605 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.848113 B =10745.730920 C =11627.225698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.237 3.763 3 N -0.498 5.498 4 C -0.014 4.014 5 C -0.036 4.036 6 C -0.120 4.120 7 C 0.194 3.806 8 N -0.662 5.662 9 C 0.709 3.291 10 O -0.623 6.623 11 N -0.624 5.624 12 C 0.100 3.900 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.588 6.588 16 C -0.553 4.553 17 H 0.072 0.928 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.964 3.036 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.264 1.264 24 C 0.124 3.876 25 C -0.129 4.129 26 C 0.004 3.996 27 O -0.233 6.233 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.429 0.571 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.374 0.626 39 H 0.269 0.731 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 19.050 -4.951 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.026 3.974 3 N -0.228 5.228 4 C -0.125 4.125 5 C -0.055 4.055 6 C -0.142 4.142 7 C 0.097 3.903 8 N -0.312 5.312 9 C 0.411 3.589 10 O -0.504 6.504 11 N -0.359 5.359 12 C -0.021 4.021 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.396 6.396 16 C -0.591 4.591 17 H 0.090 0.910 18 C -0.176 4.176 19 N -0.557 5.557 20 Si 0.789 3.211 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.188 1.188 24 C 0.001 3.999 25 C -0.151 4.151 26 C -0.047 4.047 27 O -0.126 6.126 28 H 0.137 0.863 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.192 0.808 32 H 0.204 0.796 33 H 0.269 0.731 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.223 0.777 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.857 19.649 -4.762 21.691 hybrid contribution 0.318 -2.572 0.861 2.731 sum -7.538 17.077 -3.901 19.070 Atomic orbital electron populations 1.20737 0.77163 1.07005 1.06864 1.27627 0.98367 0.77355 0.94013 1.70576 1.00832 1.29504 1.21915 1.20280 0.93445 0.90730 1.08067 1.20215 0.86993 1.01611 0.96696 1.20898 1.00475 0.90030 1.02753 1.17260 0.83443 0.91485 0.98117 1.42356 1.12502 1.20573 1.55770 1.15686 0.82196 0.80789 0.80184 1.90913 1.40193 1.71620 1.47669 1.47885 1.13495 1.22300 1.52208 1.22277 0.84424 0.99068 0.96328 1.22607 0.96786 0.92330 1.03079 1.19891 0.88425 0.90008 0.82576 1.86082 1.64145 1.54752 1.34613 1.21819 0.97244 1.06234 1.33835 0.91026 1.25844 0.95741 0.99734 0.96321 1.69784 1.11024 1.28497 1.46361 0.85462 0.79123 0.77824 0.78666 1.20292 1.21184 1.18793 1.22796 0.99924 0.81195 0.96024 1.19642 0.88041 1.00195 1.07249 1.20099 0.83717 0.95026 1.05839 1.84490 1.15531 1.37641 1.74959 0.86257 0.87514 0.86017 0.80835 0.79600 0.73054 0.90384 0.88093 0.88950 0.89488 0.77703 0.92211 0.94001 0.93622 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.07 16 2 C 0.24 5.74 8.24 88.40 0.73 6.47 16 3 N -0.50 -13.52 11.34 -296.14 -3.36 -16.88 16 4 C -0.01 -0.39 7.24 39.33 0.28 -0.10 16 5 C -0.04 -0.75 10.04 22.22 0.22 -0.53 16 6 C -0.12 -2.33 9.88 22.14 0.22 -2.11 16 7 C 0.19 5.45 6.28 38.16 0.24 5.69 16 8 N -0.66 -18.36 5.30 -317.04 -1.68 -20.04 16 9 C 0.71 27.77 8.22 179.06 1.47 29.24 16 10 O -0.62 -30.51 14.29 -4.01 -0.06 -30.57 16 11 N -0.62 -24.19 3.33 -829.72 -2.76 -26.95 16 12 C 0.10 2.91 6.16 86.73 0.53 3.45 16 13 C -0.11 -3.85 6.13 31.78 0.19 -3.66 16 14 C 0.23 10.83 0.87 -10.14 -0.01 10.82 16 15 O -0.59 -29.74 13.15 -148.98 -1.96 -31.69 16 16 C -0.55 -28.07 8.26 25.60 0.21 -27.86 16 17 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 18 C 0.02 1.26 5.30 84.65 0.45 1.71 16 19 N -0.92 -50.02 10.72 21.45 0.23 -49.79 16 20 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 24 C 0.12 5.95 5.50 86.86 0.48 6.43 16 25 C -0.13 -4.54 8.66 22.43 0.19 -4.34 16 26 C 0.00 0.12 7.43 22.87 0.17 0.29 16 27 O -0.23 -7.35 10.77 -10.42 -0.11 -7.46 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.43 8.07 7.81 -92.71 -0.72 7.34 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.10 2.05 8.14 -2.38 -0.02 2.04 16 36 H 0.09 2.96 8.03 -2.39 -0.02 2.94 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.37 20.16 7.32 -74.05 -0.54 19.62 16 39 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.04 2.35 7.47 -2.39 -0.02 2.33 16 41 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16 42 H 0.11 4.76 6.42 -2.91 -0.02 4.74 16 Total: -1.00 -75.77 354.60 -1.71 -77.47 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.18 Total: 36.84 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.14 Total: 25.57 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -7.57 Total: -113.65 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: -2.13 Total: -69.73 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -75.77 -1.71 -77.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465035878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.032 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds