Wall clock time and date at job start Tue Mar 31 2020 16:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29869 * 124.85516 * 2 1 4 4 C 1.36127 * 108.81455 * 179.97438 * 3 2 1 5 5 C 1.39610 * 133.73630 * 179.97438 * 4 3 2 6 6 C 1.36586 * 119.94056 * 180.02562 * 5 4 3 7 7 C 1.39295 * 120.49115 * 359.97438 * 6 5 4 8 8 N 1.40024 * 119.84310 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00326 * 144.89460 * 8 7 6 10 10 O 1.21595 * 119.99686 * 4.61545 * 9 8 7 11 11 N 1.34769 * 120.00259 * 184.62013 * 9 8 7 12 12 C 1.47027 * 125.64750 * 359.69127 * 11 9 8 13 13 C 1.54335 * 107.26439 * 178.85350 * 12 11 9 14 14 C 1.55154 * 103.02031 * 338.13714 * 13 12 11 15 15 O 1.42908 * 111.00357 * 277.23334 * 14 13 12 16 16 C 1.50699 * 111.03554 * 153.39998 * 14 13 12 17 17 H 1.08001 * 120.00435 * 6.33033 * 16 14 13 18 18 C 1.37877 * 119.99834 * 186.32823 * 16 14 13 19 19 N 1.31510 * 120.00112 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99846 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47112 * 60.00300 * 20 18 16 22 22 H 1.48507 * 109.47107 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47089 * 299.99888 * 20 18 16 24 24 C 1.47428 * 125.65244 * 179.97438 * 11 9 8 25 25 C 1.38543 * 120.32089 * 0.29781 * 7 6 5 26 26 C 1.38617 * 119.67874 * 359.45247 * 25 7 6 27 27 O 1.34295 * 124.85086 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47227 * 270.03216 * 1 2 3 29 29 H 1.09000 * 109.46756 * 30.02998 * 1 2 3 30 30 H 1.09001 * 109.47155 * 150.02626 * 1 2 3 31 31 H 1.08003 * 120.02673 * 0.05165 * 5 4 3 32 32 H 1.07995 * 119.75621 * 180.02562 * 6 5 4 33 33 H 0.96999 * 119.99606 * 324.61914 * 8 7 6 34 34 H 1.09001 * 109.87795 * 298.38990 * 12 11 9 35 35 H 1.08992 * 109.88262 * 59.56213 * 12 11 9 36 36 H 1.09002 * 110.84877 * 219.66922 * 13 12 11 37 37 H 1.08995 * 110.51625 * 96.45372 * 13 12 11 38 38 H 0.96699 * 113.99433 * 173.65163 * 15 14 13 39 39 H 0.97007 * 119.99902 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36657 * 322.93400 * 24 11 9 41 41 H 1.08997 * 110.36472 * 85.13873 * 24 11 9 42 42 H 1.07999 * 120.16113 * 179.73110 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2492 1.0657 0.0000 4 6 3.5575 0.6896 0.0006 5 6 4.7638 1.3923 0.0004 6 6 5.9487 0.7128 0.0006 7 6 5.9646 -0.6801 0.0016 8 7 7.1870 -1.3630 0.0023 9 6 7.3096 -2.5247 0.6743 10 8 6.3380 -3.0227 1.2097 11 7 8.5088 -3.1345 0.7530 12 6 9.7585 -2.6482 0.1500 13 6 10.8693 -3.6516 0.5261 14 6 10.2956 -4.3521 1.7861 15 8 10.5355 -3.5724 2.9595 16 6 10.8620 -5.7402 1.9384 17 1 11.6452 -6.0796 1.2766 18 6 10.3804 -6.5772 2.9225 19 7 9.4264 -6.1643 3.7280 20 14 11.0820 -8.2982 3.1108 21 1 12.5371 -8.2112 3.3942 22 1 10.3992 -8.9911 4.2328 23 1 10.8670 -9.0605 1.8547 24 6 8.7839 -4.4025 1.4530 25 6 4.7767 -1.3931 -0.0039 26 6 3.5684 -0.7139 0.0011 27 8 2.2744 -1.1021 0.0005 28 1 -0.3633 0.0006 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 4.7601 2.4723 0.0005 32 1 6.8801 1.2594 0.0009 33 1 7.9445 -1.0018 -0.4841 34 1 9.6524 -2.5988 -0.9337 35 1 10.0023 -1.6626 0.5462 36 1 11.7977 -3.1318 0.7629 37 1 11.0230 -4.3706 -0.2785 38 1 10.1121 -3.9204 3.7562 39 1 9.0878 -6.7530 4.4207 40 1 8.1955 -4.4658 2.3685 41 1 8.5652 -5.2497 0.8031 42 1 4.7921 -2.4730 -0.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465035882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:07 Heat of formation + Delta-G solvation = -27.115679 kcal Electronic energy + Delta-G solvation = -27832.763814 eV Core-core repulsion = 23779.757213 eV Total energy + Delta-G solvation = -4053.006601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.25718 -40.35755 -38.43846 -37.16886 -35.02821 -34.43685 -33.96219 -32.27897 -31.42120 -30.72570 -29.96901 -28.03035 -27.33089 -25.10097 -23.43121 -23.12546 -22.13515 -21.52405 -19.78286 -19.68390 -18.68437 -17.78710 -17.23673 -16.95241 -16.86176 -16.27666 -15.44683 -15.20023 -14.78196 -14.58435 -14.24244 -14.15092 -13.93736 -13.54960 -13.42325 -13.39598 -13.09844 -12.88947 -12.64311 -12.58155 -12.22302 -11.80373 -11.71743 -11.59422 -11.39309 -11.05957 -10.90987 -10.71715 -10.63156 -10.53037 -10.27182 -9.98925 -9.65281 -9.43952 -8.87444 -8.74443 -8.46366 -8.06863 -7.73789 -6.31956 -4.42213 0.64410 1.16973 2.29482 2.35504 2.86404 3.19767 3.25959 3.27296 3.36115 3.67746 3.72406 4.16630 4.25716 4.49855 4.82441 4.84154 4.94627 4.99245 5.04855 5.15366 5.28424 5.33207 5.39587 5.52629 5.63506 5.73944 5.87589 5.90823 5.95891 6.03189 6.11418 6.28520 6.35380 6.41525 6.61653 6.77796 6.79499 6.81299 7.10220 7.22698 7.42163 7.54688 7.69506 7.96801 8.25036 8.61270 8.82617 9.24507 9.33091 10.75020 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.002584 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.024667 B =10834.584413 C =11720.686794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.234 3.766 3 N -0.478 5.478 4 C -0.004 4.004 5 C -0.043 4.043 6 C -0.142 4.142 7 C 0.203 3.797 8 N -0.686 5.686 9 C 0.713 3.287 10 O -0.576 6.576 11 N -0.620 5.620 12 C 0.100 3.900 13 C -0.115 4.115 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.539 4.539 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.892 5.892 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.111 3.889 25 C -0.102 4.102 26 C 0.034 3.966 27 O -0.213 6.213 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.409 0.591 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.382 0.618 39 H 0.271 0.729 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 12.795 -9.543 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.022 3.978 3 N -0.208 5.208 4 C -0.116 4.116 5 C -0.062 4.062 6 C -0.163 4.163 7 C 0.106 3.894 8 N -0.334 5.334 9 C 0.415 3.585 10 O -0.454 6.454 11 N -0.356 5.356 12 C -0.023 4.023 13 C -0.153 4.153 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.530 5.530 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.010 4.010 25 C -0.124 4.124 26 C -0.017 4.017 27 O -0.105 6.105 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.669 13.287 -9.380 19.451 hybrid contribution 0.651 -1.830 0.352 1.975 sum -10.018 11.457 -9.028 17.695 Atomic orbital electron populations 1.20365 0.81103 1.05338 1.05051 1.26375 0.96558 0.78410 0.96463 1.70537 1.01012 1.29026 1.20240 1.19802 0.92111 0.91328 1.08344 1.19723 0.88088 0.99964 0.98439 1.20546 0.98704 0.91987 1.05094 1.17027 0.84525 0.90104 0.97787 1.42703 1.12130 1.24216 1.54344 1.15516 0.83413 0.79920 0.79611 1.90914 1.36713 1.65730 1.52007 1.48005 1.05667 1.26317 1.55591 1.22039 0.85447 0.98707 0.96153 1.22595 0.96668 0.97265 0.98796 1.19620 0.88005 0.89117 0.82412 1.86106 1.77668 1.55282 1.20060 1.21396 1.21617 0.97544 1.17212 0.91507 1.25086 0.94078 0.99094 0.94959 1.69702 1.26634 1.37561 1.19081 0.86451 0.79280 0.83235 0.77885 1.19975 1.21071 1.20009 1.23263 1.00520 0.80811 0.96424 1.19918 0.86114 1.01957 1.04419 1.19990 0.83618 0.93967 1.04137 1.84492 1.15351 1.36068 1.74550 0.88506 0.87875 0.89000 0.84380 0.84213 0.75501 0.92762 0.92265 0.90568 0.90277 0.76832 0.91863 0.89384 0.92089 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 2 C 0.23 2.86 8.24 -13.11 -0.11 2.75 16 3 N -0.48 -6.72 11.34 -8.67 -0.10 -6.82 16 4 C 0.00 -0.06 7.24 -84.66 -0.61 -0.67 16 5 C -0.04 -0.51 10.04 -39.67 -0.40 -0.91 16 6 C -0.14 -1.64 9.88 -39.79 -0.39 -2.03 16 7 C 0.20 2.94 6.30 -83.61 -0.53 2.42 16 8 N -0.69 -10.01 5.29 -14.18 -0.08 -10.09 16 9 C 0.71 13.80 8.33 -86.93 -0.72 13.08 16 10 O -0.58 -13.28 14.04 5.28 0.07 -13.20 16 11 N -0.62 -12.10 3.33 -176.25 -0.59 -12.69 16 12 C 0.10 1.59 6.16 -3.06 -0.02 1.57 16 13 C -0.12 -2.13 6.13 -24.89 -0.15 -2.29 16 14 C 0.25 5.77 0.87 -89.64 -0.08 5.70 16 15 O -0.58 -14.35 13.16 -35.23 -0.46 -14.82 16 16 C -0.54 -13.58 8.27 -34.44 -0.28 -13.86 16 17 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 18 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 19 N -0.89 -23.37 10.69 55.43 0.59 -22.78 16 20 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 C 0.11 2.58 5.38 -2.54 -0.01 2.56 16 25 C -0.10 -1.68 8.70 -39.33 -0.34 -2.02 16 26 C 0.03 0.54 7.43 -38.65 -0.29 0.25 16 27 O -0.21 -3.17 10.78 3.50 0.04 -3.13 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.41 4.57 7.82 -40.82 -0.32 4.25 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 38 H 0.38 9.74 7.56 45.56 0.34 10.08 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.09 2.32 7.33 -51.93 -0.38 1.94 16 41 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 42 H 0.16 2.85 6.23 -52.49 -0.33 2.53 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.85 354.30 -8.30 -40.15 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.44 Total: 14.83 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -3.66 Total: 8.26 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.17 Total: -52.38 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.35 Total: -31.15 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.85 -8.30 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465035882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.034 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds