Wall clock time and date at job start Tue Mar 31 2020 16:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29869 * 124.85516 * 2 1 4 4 C 1.36127 * 108.81455 * 179.97438 * 3 2 1 5 5 C 1.39610 * 133.73630 * 179.97438 * 4 3 2 6 6 C 1.36586 * 119.94056 * 180.02562 * 5 4 3 7 7 C 1.39295 * 120.49115 * 359.97438 * 6 5 4 8 8 N 1.40024 * 119.84310 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00326 * 144.89460 * 8 7 6 10 10 O 1.21595 * 119.99686 * 4.61545 * 9 8 7 11 11 N 1.34769 * 120.00259 * 184.62013 * 9 8 7 12 12 C 1.47027 * 125.64750 * 359.69127 * 11 9 8 13 13 C 1.54335 * 107.26439 * 178.85350 * 12 11 9 14 14 C 1.55154 * 103.02031 * 338.13714 * 13 12 11 15 15 O 1.42908 * 111.00357 * 277.23334 * 14 13 12 16 16 C 1.50699 * 111.03554 * 153.39998 * 14 13 12 17 17 H 1.08001 * 120.00435 * 6.33033 * 16 14 13 18 18 C 1.37877 * 119.99834 * 186.32823 * 16 14 13 19 19 N 1.31510 * 120.00112 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99846 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47112 * 60.00300 * 20 18 16 22 22 H 1.48507 * 109.47107 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47089 * 299.99888 * 20 18 16 24 24 C 1.47428 * 125.65244 * 179.97438 * 11 9 8 25 25 C 1.38543 * 120.32089 * 0.29781 * 7 6 5 26 26 C 1.38617 * 119.67874 * 359.45247 * 25 7 6 27 27 O 1.34295 * 124.85086 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47227 * 270.03216 * 1 2 3 29 29 H 1.09000 * 109.46756 * 30.02998 * 1 2 3 30 30 H 1.09001 * 109.47155 * 150.02626 * 1 2 3 31 31 H 1.08003 * 120.02673 * 0.05165 * 5 4 3 32 32 H 1.07995 * 119.75621 * 180.02562 * 6 5 4 33 33 H 0.96999 * 119.99606 * 324.61914 * 8 7 6 34 34 H 1.09001 * 109.87795 * 298.38990 * 12 11 9 35 35 H 1.08992 * 109.88262 * 59.56213 * 12 11 9 36 36 H 1.09002 * 110.84877 * 219.66922 * 13 12 11 37 37 H 1.08995 * 110.51625 * 96.45372 * 13 12 11 38 38 H 0.96699 * 113.99433 * 173.65163 * 15 14 13 39 39 H 0.97007 * 119.99902 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36657 * 322.93400 * 24 11 9 41 41 H 1.08997 * 110.36472 * 85.13873 * 24 11 9 42 42 H 1.07999 * 120.16113 * 179.73110 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2492 1.0657 0.0000 4 6 3.5575 0.6896 0.0006 5 6 4.7638 1.3923 0.0004 6 6 5.9487 0.7128 0.0006 7 6 5.9646 -0.6801 0.0016 8 7 7.1870 -1.3630 0.0023 9 6 7.3096 -2.5247 0.6743 10 8 6.3380 -3.0227 1.2097 11 7 8.5088 -3.1345 0.7530 12 6 9.7585 -2.6482 0.1500 13 6 10.8693 -3.6516 0.5261 14 6 10.2956 -4.3521 1.7861 15 8 10.5355 -3.5724 2.9595 16 6 10.8620 -5.7402 1.9384 17 1 11.6452 -6.0796 1.2766 18 6 10.3804 -6.5772 2.9225 19 7 9.4264 -6.1643 3.7280 20 14 11.0820 -8.2982 3.1108 21 1 12.5371 -8.2112 3.3942 22 1 10.3992 -8.9911 4.2328 23 1 10.8670 -9.0605 1.8547 24 6 8.7839 -4.4025 1.4530 25 6 4.7767 -1.3931 -0.0039 26 6 3.5684 -0.7139 0.0011 27 8 2.2744 -1.1021 0.0005 28 1 -0.3633 0.0006 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 4.7601 2.4723 0.0005 32 1 6.8801 1.2594 0.0009 33 1 7.9445 -1.0018 -0.4841 34 1 9.6524 -2.5988 -0.9337 35 1 10.0023 -1.6626 0.5462 36 1 11.7977 -3.1318 0.7629 37 1 11.0230 -4.3706 -0.2785 38 1 10.1121 -3.9204 3.7562 39 1 9.0878 -6.7530 4.4207 40 1 8.1955 -4.4658 2.3685 41 1 8.5652 -5.2497 0.8031 42 1 4.7921 -2.4730 -0.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465035882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:07 Heat of formation + Delta-G solvation = -52.614702 kcal Electronic energy + Delta-G solvation = -27833.869535 eV Core-core repulsion = 23779.757213 eV Total energy + Delta-G solvation = -4054.112322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.29690 -41.77300 -39.82724 -38.62100 -36.17561 -36.13013 -35.18556 -34.23572 -32.34390 -32.00231 -31.22156 -29.61619 -28.50030 -26.85180 -24.61795 -24.42719 -23.33881 -22.54878 -21.50815 -21.06248 -19.91208 -19.14567 -18.89995 -18.19354 -17.92678 -17.50917 -17.04041 -16.91591 -16.26170 -16.17593 -15.48019 -15.44477 -14.93705 -14.82466 -14.71923 -14.61488 -14.14898 -14.12376 -13.85879 -13.61463 -13.50893 -13.31416 -13.25723 -12.86972 -12.80850 -12.55995 -12.47599 -12.33522 -12.27785 -12.08956 -11.78548 -11.36675 -11.19934 -10.99693 -10.66678 -10.33608 -9.92755 -9.58913 -8.95942 -8.25133 -6.42240 -0.40461 0.11906 1.20138 1.31903 1.43383 1.44085 1.51864 1.59361 1.97347 2.37701 2.58294 2.81081 2.90815 3.01310 3.46010 3.78054 3.89988 3.95994 3.99693 4.07885 4.17347 4.32561 4.33770 4.51550 4.60667 4.61804 4.66531 4.74373 4.79404 4.96903 5.02278 5.06643 5.07865 5.09192 5.17920 5.26958 5.35629 5.37906 5.46244 5.67175 5.75402 5.97010 6.09091 6.52303 6.64680 6.86236 7.26589 7.34513 7.35715 8.79551 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.002584 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.024667 B =10834.584413 C =11720.686794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.238 3.762 3 N -0.499 5.499 4 C -0.013 4.013 5 C -0.039 4.039 6 C -0.121 4.121 7 C 0.189 3.811 8 N -0.662 5.662 9 C 0.709 3.291 10 O -0.623 6.623 11 N -0.624 5.624 12 C 0.100 3.900 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.587 6.587 16 C -0.555 4.555 17 H 0.071 0.929 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.270 1.270 24 C 0.126 3.874 25 C -0.125 4.125 26 C 0.002 3.998 27 O -0.232 6.232 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.429 0.571 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.379 15.170 -11.130 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.027 3.973 3 N -0.230 5.230 4 C -0.125 4.125 5 C -0.058 4.058 6 C -0.142 4.142 7 C 0.093 3.907 8 N -0.312 5.312 9 C 0.412 3.588 10 O -0.504 6.504 11 N -0.360 5.360 12 C -0.021 4.021 13 C -0.148 4.148 14 C 0.192 3.808 15 O -0.394 6.394 16 C -0.593 4.593 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.147 4.147 26 C -0.048 4.048 27 O -0.125 6.125 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.190 0.810 32 H 0.201 0.799 33 H 0.269 0.731 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.221 0.779 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.011 15.723 -11.024 21.655 hybrid contribution 0.344 -2.536 0.833 2.691 sum -9.666 13.187 -10.191 19.267 Atomic orbital electron populations 1.20740 0.77142 1.07165 1.06719 1.27631 0.98368 0.77366 0.93931 1.70579 1.00851 1.29581 1.21949 1.20278 0.93386 0.90874 1.07928 1.20189 0.87067 1.01563 0.96960 1.20904 1.00376 0.90291 1.02619 1.17265 0.83535 0.91361 0.98568 1.42318 1.12975 1.22490 1.53436 1.15682 0.82632 0.80860 0.79666 1.90895 1.38298 1.67243 1.53963 1.47893 1.07048 1.25368 1.55641 1.22277 0.82650 0.98617 0.98574 1.22600 0.97864 0.97883 0.96447 1.19866 0.88163 0.89233 0.83580 1.86096 1.77574 1.55505 1.20226 1.21773 1.21611 0.98778 1.17158 0.91127 1.25832 0.94372 1.02435 0.94920 1.69837 1.27660 1.38453 1.19507 0.85537 0.78664 0.79314 0.77697 1.19372 1.21393 1.19474 1.22754 1.00183 0.82223 0.94540 1.19801 0.87747 1.00657 1.06537 1.20137 0.83807 0.94956 1.05923 1.84487 1.15481 1.37558 1.74952 0.86663 0.85894 0.87212 0.81020 0.79918 0.73102 0.88463 0.90006 0.89349 0.89177 0.77911 0.92251 0.93678 0.93927 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.09 16 2 C 0.24 5.69 8.24 88.40 0.73 6.42 16 3 N -0.50 -13.57 11.34 -296.13 -3.36 -16.93 16 4 C -0.01 -0.37 7.24 39.32 0.28 -0.09 16 5 C -0.04 -0.83 10.04 22.21 0.22 -0.60 16 6 C -0.12 -2.42 9.88 22.14 0.22 -2.21 16 7 C 0.19 5.33 6.30 38.16 0.24 5.57 16 8 N -0.66 -18.39 5.29 -317.04 -1.68 -20.07 16 9 C 0.71 27.75 8.33 179.06 1.49 29.24 16 10 O -0.62 -30.39 14.04 -4.01 -0.06 -30.45 16 11 N -0.62 -24.21 3.33 -829.79 -2.76 -26.97 16 12 C 0.10 2.90 6.16 86.73 0.53 3.44 16 13 C -0.11 -3.85 6.13 31.79 0.19 -3.65 16 14 C 0.23 10.81 0.87 -10.16 -0.01 10.80 16 15 O -0.59 -29.27 13.16 -148.98 -1.96 -31.23 16 16 C -0.55 -28.14 8.27 25.60 0.21 -27.93 16 17 H 0.07 3.44 7.79 -2.91 -0.02 3.41 16 18 C 0.03 1.32 5.29 84.66 0.45 1.76 16 19 N -0.92 -49.85 10.69 21.45 0.23 -49.62 16 20 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 C 0.13 6.07 5.38 86.84 0.47 6.54 16 25 C -0.13 -4.32 8.70 22.43 0.20 -4.12 16 26 C 0.00 0.08 7.43 22.87 0.17 0.25 16 27 O -0.23 -7.16 10.78 -10.40 -0.11 -7.27 16 28 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.43 8.13 7.82 -92.71 -0.72 7.41 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.09 2.92 8.03 -2.39 -0.02 2.90 16 38 H 0.37 19.77 7.56 -74.06 -0.56 19.21 16 39 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 40 H 0.04 2.53 7.33 -2.39 -0.02 2.51 16 41 H 0.04 2.14 8.03 -2.39 -0.02 2.12 16 42 H 0.12 4.94 6.23 -2.91 -0.02 4.92 16 Total: -1.00 -74.91 354.30 -1.72 -76.63 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.19 Total: 36.97 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 6.15 Total: 25.50 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -7.56 Total: -113.59 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -2.13 Total: -68.95 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -74.91 -1.72 -76.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465035882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.016 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds