Wall clock time and date at job start Tue Mar 31 2020 16:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35243 * 126.07445 * 2 1 4 4 C 1.40403 * 107.86890 * 180.12366 * 3 2 1 5 5 N 1.40165 * 125.97106 * 179.82807 * 4 3 2 6 6 C 1.34773 * 119.99811 * 359.44140 * 5 4 3 7 7 O 1.21295 * 120.00052 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00086 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.47429 * 179.97438 * 8 6 5 10 10 C 1.38261 * 119.92562 * 269.72670 * 9 8 6 11 11 C 1.38239 * 120.14392 * 179.72168 * 10 9 8 12 12 C 1.38566 * 119.99752 * 0.55180 * 11 10 9 13 13 O 1.35999 * 120.07075 * 179.70241 * 12 11 10 14 14 C 1.39149 * 119.85613 * 359.72559 * 12 11 10 15 15 O 1.36001 * 120.07269 * 180.02562 * 14 12 11 16 16 C 1.38236 * 119.92780 * 89.99915 * 9 8 6 17 17 N 1.31211 * 108.05598 * 359.56219 * 4 3 2 18 18 N 1.34977 * 126.06750 * 179.63879 * 2 1 3 19 19 C 1.46497 * 125.97445 * 0.02562 * 18 2 1 20 20 C 1.50702 * 109.47022 * 270.00122 * 19 18 2 21 21 H 1.08000 * 120.00107 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99658 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00489 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99805 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46953 * 60.00001 * 24 22 20 26 26 H 1.48503 * 109.47131 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47132 * 300.00167 * 24 22 20 28 28 H 1.09003 * 109.47342 * 270.36228 * 1 2 3 29 29 H 1.09002 * 109.47188 * 30.36514 * 1 2 3 30 30 H 1.09001 * 109.47575 * 150.36151 * 1 2 3 31 31 H 1.07999 * 126.05768 * 359.94621 * 3 2 1 32 32 H 0.96991 * 119.99766 * 179.71472 * 5 4 3 33 33 H 1.08999 * 109.47405 * 300.00190 * 8 6 5 34 34 H 1.09005 * 109.47352 * 59.99992 * 8 6 5 35 35 H 1.07997 * 119.92551 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.99875 * 180.24982 * 11 10 9 37 37 H 0.96702 * 113.99938 * 270.02028 * 13 12 11 38 38 H 0.96694 * 113.99421 * 269.97406 * 15 14 12 39 39 H 1.08000 * 119.99768 * 359.97438 * 16 9 8 40 40 H 1.08995 * 109.47079 * 30.00535 * 19 18 2 41 41 H 1.08996 * 109.46938 * 150.00309 * 19 18 2 42 42 H 0.97000 * 120.00180 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0029 5 7 4.7735 1.4748 -0.0072 6 6 4.6367 2.8155 -0.0204 7 8 3.5301 3.3122 -0.0289 8 6 5.8585 3.6976 -0.0244 9 6 5.4343 5.1436 -0.0402 10 6 5.2500 5.7953 -1.2456 11 6 4.8553 7.1199 -1.2654 12 6 4.6545 7.8008 -0.0753 13 8 4.2720 9.1058 -0.0930 14 6 4.8455 7.1466 1.1378 15 8 4.6492 7.8105 2.3084 16 6 5.2356 5.8171 1.1506 17 7 3.6336 -0.6576 0.0050 18 7 2.3016 -1.0910 0.0069 19 6 1.8499 -2.4846 0.0151 20 6 1.6945 -2.9538 1.4388 21 1 1.9109 -2.2814 2.2557 22 6 1.2769 -4.2419 1.6983 23 7 1.0138 -5.0610 0.7036 24 14 1.0850 -4.8239 3.4630 25 1 0.0837 -3.9753 4.1579 26 1 0.6270 -6.2365 3.4713 27 1 2.3909 -4.7222 4.1626 28 1 -0.3634 0.0065 1.0277 29 1 -0.3634 0.8867 -0.5195 30 1 -0.3634 -0.8932 -0.5082 31 1 1.9719 2.1210 -0.0008 32 1 5.6583 1.0776 -0.0048 33 1 6.4508 3.5021 0.8694 34 1 6.4570 3.4853 -0.9104 35 1 5.4109 5.2670 -2.1737 36 1 4.7082 7.6255 -2.2083 37 1 5.0092 9.7317 -0.0976 38 1 5.4400 8.2512 2.6480 39 1 5.3841 5.3068 2.0908 40 1 0.8915 -2.5589 -0.4987 41 1 2.5847 -3.1077 -0.4946 42 1 0.7204 -5.9673 0.8862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546330177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:25 Heat of formation + Delta-G solvation = -17.960762 kcal Electronic energy + Delta-G solvation = -26822.292447 eV Core-core repulsion = 22769.682833 eV Total energy + Delta-G solvation = -4052.609614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.85947 -40.44552 -39.29847 -37.22620 -37.01216 -34.82292 -33.40498 -32.34179 -31.38039 -30.81095 -30.24661 -27.63474 -26.46714 -26.27564 -23.31512 -23.11245 -22.35031 -21.09938 -19.80301 -19.26010 -19.00781 -17.91352 -16.81378 -16.70732 -16.64152 -16.39353 -15.98003 -15.34778 -15.21807 -15.09089 -14.40382 -14.36262 -14.06855 -13.98548 -13.88713 -13.05644 -12.85380 -12.75423 -12.47702 -12.29238 -12.22060 -12.09580 -11.89630 -11.66747 -11.59786 -11.40090 -11.10418 -10.81626 -10.49535 -10.46765 -10.24387 -9.95327 -9.60830 -9.54837 -9.11980 -8.74022 -8.64357 -7.94394 -7.46253 -6.25851 -4.33531 0.80344 0.96105 2.30896 2.73382 2.90547 3.23141 3.25196 3.26841 3.31637 3.70403 3.74958 3.82302 3.91542 4.30100 4.32338 4.52254 4.75808 4.90983 4.94212 5.07847 5.12472 5.21278 5.42209 5.49026 5.59859 5.71014 5.85266 5.92219 6.00539 6.11827 6.18861 6.24642 6.39441 6.44690 6.54806 6.71890 6.93043 7.04786 7.08521 7.44401 7.48761 7.64104 7.66905 7.88418 8.04624 8.24672 8.64416 8.74306 9.32719 10.81391 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.002146 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.876260 B =13043.171267 C =13224.860512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.263 3.737 5 N -0.632 5.632 6 C 0.517 3.483 7 O -0.505 6.505 8 C -0.098 4.098 9 C -0.056 4.056 10 C -0.094 4.094 11 C -0.129 4.129 12 C 0.078 3.922 13 O -0.488 6.488 14 C 0.081 3.919 15 O -0.487 6.487 16 C -0.113 4.113 17 N -0.321 5.321 18 N -0.317 5.317 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.410 0.590 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.384 0.616 38 H 0.384 0.616 39 H 0.133 0.867 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.589 23.832 -3.204 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.010 3.990 5 N -0.280 5.280 6 C 0.302 3.698 7 O -0.378 6.378 8 C -0.138 4.138 9 C -0.057 4.057 10 C -0.113 4.113 11 C -0.147 4.147 12 C 0.033 3.967 13 O -0.298 6.298 14 C 0.036 3.964 15 O -0.296 6.296 16 C -0.132 4.132 17 N -0.152 5.152 18 N -0.099 5.099 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.176 0.824 32 H 0.245 0.755 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.240 0.760 39 H 0.151 0.849 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.260 22.400 -3.307 25.288 hybrid contribution 0.838 0.322 1.068 1.395 sum 12.098 22.722 -2.240 25.839 Atomic orbital electron populations 1.20335 0.87883 1.02833 1.03195 1.21074 0.94927 0.87176 1.00829 1.21247 0.89765 0.99789 1.21303 1.18989 0.87256 0.89583 1.03159 1.42487 1.07537 1.05069 1.72910 1.20464 0.91280 0.81349 0.76720 1.90702 1.26661 1.73693 1.46725 1.20629 0.96325 0.90796 1.06004 1.19135 0.99708 0.93904 0.92928 1.20929 0.98637 0.93985 0.97714 1.21291 1.00421 0.95391 0.97631 1.18808 1.00633 0.85391 0.91828 1.84945 1.35313 1.13103 1.96398 1.18709 1.01012 0.91591 0.85090 1.84965 1.38166 1.70185 1.36273 1.21202 0.99579 0.93711 0.98682 1.77245 0.99960 1.08517 1.29442 1.48993 1.00970 1.07792 1.52168 1.19683 0.95968 0.71309 0.98920 1.21274 1.46892 0.97968 0.91326 0.91837 1.24924 0.94662 0.96036 0.98154 1.69906 1.44866 1.06978 1.31229 0.86411 0.78809 0.77662 0.83774 1.19924 1.20942 1.19995 0.90407 0.90812 0.90846 0.82375 0.75468 0.87328 0.87219 0.85174 0.84867 0.76053 0.76046 0.84906 0.92798 0.93020 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.11 36.00 0.36 -1.11 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -6.04 9.52 -39.83 -0.38 -6.42 16 4 C 0.26 5.30 8.11 -154.39 -1.25 4.04 16 5 N -0.63 -9.28 5.45 -11.13 -0.06 -9.34 16 6 C 0.52 6.96 7.79 -10.99 -0.09 6.87 16 7 O -0.51 -8.87 13.17 5.54 0.07 -8.80 16 8 C -0.10 -0.79 5.83 -29.04 -0.17 -0.96 16 9 C -0.06 -0.54 4.37 -104.61 -0.46 -0.99 16 10 C -0.09 -0.85 9.69 -39.57 -0.38 -1.24 16 11 C -0.13 -1.17 9.98 -39.46 -0.39 -1.56 16 12 C 0.08 0.79 6.72 -39.12 -0.26 0.52 16 13 O -0.49 -4.39 13.29 -34.24 -0.46 -4.85 16 14 C 0.08 0.84 6.72 -39.12 -0.26 0.58 16 15 O -0.49 -4.68 13.29 -34.25 -0.46 -5.14 16 16 C -0.11 -1.14 9.63 -39.46 -0.38 -1.52 16 17 N -0.32 -7.38 12.59 31.44 0.40 -6.99 16 18 N -0.32 -7.56 3.59 -58.33 -0.21 -7.77 16 19 C 0.26 6.67 5.99 -5.19 -0.03 6.63 16 20 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 24 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 31 H 0.16 3.25 5.92 -52.49 -0.31 2.94 16 32 H 0.41 4.60 8.82 -40.82 -0.36 4.24 16 33 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.11 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.38 1.28 9.06 45.56 0.41 1.70 16 38 H 0.38 1.49 9.06 45.56 0.41 1.90 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 41 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -37.49 369.61 -7.61 -45.10 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.50 Total: 7.63 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.68 Total: -7.22 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.86 Total: -48.45 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.84 Total: -18.78 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.49 -7.61 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546330177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.141 kcal (2) G-P(sol) polarization free energy of solvation -37.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds