Wall clock time and date at job start Tue Mar 31 2020 15:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38040 * 126.29412 * 2 1 4 4 C 1.47432 * 126.41660 * 359.97438 * 3 2 1 5 5 O 1.21600 * 119.99463 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99924 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99664 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47014 * 179.97438 * 7 6 4 9 9 C 1.38629 * 120.05642 * 269.72472 * 8 7 6 10 10 O 1.35899 * 120.02991 * 359.97438 * 9 8 7 11 11 C 1.38776 * 119.94260 * 179.72031 * 9 8 7 12 12 C 1.38175 * 120.05230 * 0.55931 * 11 9 8 13 13 C 1.38165 * 120.11264 * 359.71481 * 12 11 9 14 14 C 1.38633 * 120.04884 * 89.99911 * 8 7 6 15 15 O 1.35892 * 120.03413 * 359.97438 * 14 8 7 16 16 C 1.41295 * 107.17272 * 180.24857 * 3 2 1 17 17 N 1.30455 * 108.01983 * 359.61027 * 16 3 2 18 18 N 1.34260 * 126.28863 * 180.02562 * 2 1 3 19 19 C 1.46494 * 125.75447 * 359.95597 * 18 2 1 20 20 C 1.50703 * 109.47278 * 90.00283 * 19 18 2 21 21 H 1.08004 * 119.99399 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00560 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00095 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99836 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46874 * 90.00259 * 24 22 20 26 26 H 1.48495 * 109.47519 * 210.00246 * 24 22 20 27 27 H 1.48507 * 109.47207 * 330.00548 * 24 22 20 28 28 H 1.09000 * 109.47014 * 89.97873 * 1 2 3 29 29 H 1.08999 * 109.47428 * 209.97883 * 1 2 3 30 30 H 1.09003 * 109.47019 * 329.98173 * 1 2 3 31 31 H 0.97000 * 120.00231 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.46864 * 60.00469 * 7 6 4 33 33 H 1.09000 * 109.47078 * 299.99722 * 7 6 4 34 34 H 0.96703 * 113.99918 * 89.99282 * 10 9 8 35 35 H 1.08007 * 119.97236 * 180.29838 * 11 9 8 36 36 H 1.08002 * 119.93956 * 179.74703 * 12 11 9 37 37 H 1.08003 * 119.97455 * 179.97438 * 13 12 11 38 38 H 0.96706 * 113.99958 * 89.99024 * 15 14 8 39 39 H 1.07992 * 125.99119 * 179.74331 * 16 3 2 40 40 H 1.09000 * 109.47616 * 210.00402 * 19 18 2 41 41 H 1.08997 * 109.47296 * 330.00606 * 19 18 2 42 42 H 0.97000 * 119.99613 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8001 3.5106 -0.0010 7 6 2.3646 4.9094 -0.0009 8 6 3.5719 5.8114 -0.0009 9 6 4.1247 6.2315 1.1990 10 8 3.5780 5.8308 2.3769 11 6 5.2400 7.0573 1.1964 12 6 5.7924 7.4702 -0.0009 13 6 5.2399 7.0574 -1.1982 14 6 4.1281 6.2269 -1.2008 15 8 3.5855 5.8208 -2.3787 16 6 3.6591 0.6498 -0.0059 17 7 3.6340 -0.6545 -0.0007 18 7 2.3016 -1.0822 -0.0005 19 6 1.8499 -2.4758 -0.0002 20 6 1.6942 -2.9537 -1.4209 21 1 1.9098 -2.2859 -2.2419 22 6 1.2757 -4.2431 -1.6727 23 7 1.1403 -4.6602 -2.9126 24 14 0.9022 -5.3978 -0.2527 25 1 -0.5285 -5.2717 0.1247 26 1 1.1841 -6.7964 -0.6646 27 1 1.7542 -5.0433 0.9109 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 3.7463 3.2972 -0.0013 32 1 1.7664 5.1036 0.8893 33 1 1.7657 5.1035 -0.8907 34 1 3.9482 5.0068 2.7222 35 1 5.6739 7.3810 2.1310 36 1 6.6580 8.1162 -0.0009 37 1 5.6733 7.3818 -2.1327 38 1 2.8993 6.4108 -2.7198 39 1 4.5449 1.2674 -0.0113 40 1 2.5848 -3.0959 0.5132 41 1 0.8916 -2.5470 0.5141 42 1 0.8462 -5.5674 -3.0896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558534246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:11 Heat of formation + Delta-G solvation = -23.686128 kcal Electronic energy + Delta-G solvation = -27361.488305 eV Core-core repulsion = 23308.630420 eV Total energy + Delta-G solvation = -4052.857885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91314 -40.61550 -38.64504 -38.15108 -36.08196 -34.79071 -33.88352 -32.22059 -31.45202 -31.00021 -29.67319 -28.08208 -26.94957 -25.82288 -23.09668 -22.95349 -22.22374 -21.61615 -19.87564 -19.30535 -18.98677 -17.76424 -17.29333 -17.20756 -16.74443 -16.25371 -15.62937 -15.31265 -15.05178 -14.99851 -14.81337 -14.48360 -14.10879 -13.84111 -13.57734 -13.22618 -12.95899 -12.77787 -12.66304 -12.54004 -12.31953 -12.25086 -12.08185 -12.06881 -11.58643 -11.21137 -11.05865 -10.89927 -10.83677 -10.40158 -10.23484 -9.78950 -9.59435 -9.07787 -8.98634 -8.94725 -8.84394 -8.63818 -7.94622 -6.32220 -4.36855 0.70149 0.74727 2.15125 2.74199 2.95718 3.09425 3.14826 3.18587 3.25855 3.58705 3.67934 3.90872 4.08151 4.16196 4.30281 4.57410 4.60805 4.92227 4.97106 5.07205 5.18249 5.28837 5.30608 5.44046 5.51893 5.65637 5.75374 5.84384 5.90948 5.93737 6.04907 6.06391 6.20075 6.27573 6.44858 6.47563 6.60383 6.61451 7.03023 7.19110 7.23236 7.31125 7.57417 7.74645 8.20776 8.28938 8.60937 8.71350 9.21633 10.80061 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.002418 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.285932 B =11577.513420 C =11737.272243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.328 4.328 4 C 0.605 3.395 5 O -0.555 6.555 6 N -0.727 5.727 7 C 0.175 3.825 8 C -0.162 4.162 9 C 0.141 3.859 10 O -0.493 6.493 11 C -0.159 4.159 12 C -0.081 4.081 13 C -0.158 4.158 14 C 0.143 3.857 15 O -0.489 6.489 16 C 0.061 3.939 17 N -0.293 5.293 18 N -0.314 5.314 19 C 0.225 3.775 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.883 5.883 24 Si 0.873 3.127 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.397 0.603 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.394 0.606 39 H 0.176 0.824 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 24.050 7.984 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 C -0.344 4.344 4 C 0.395 3.605 5 O -0.434 6.434 6 N -0.379 5.379 7 C 0.052 3.948 8 C -0.163 4.163 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.177 4.177 12 C -0.100 4.100 13 C -0.177 4.177 14 C 0.097 3.903 15 O -0.300 6.300 16 C -0.126 4.126 17 N -0.112 5.112 18 N -0.090 5.090 19 C 0.106 3.894 20 C -0.583 4.583 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.251 0.749 39 H 0.193 0.807 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.934 22.841 7.862 25.131 hybrid contribution -0.041 -0.140 0.398 0.424 sum 6.893 22.701 8.260 25.121 Atomic orbital electron populations 1.20595 0.86707 1.03653 1.04245 1.21466 0.94957 0.86392 0.93998 1.19658 0.93060 0.92527 1.29107 1.17259 0.84969 0.83763 0.74461 1.90694 1.16665 1.84394 1.51662 1.45675 1.09704 1.04789 1.77687 1.19788 0.92607 0.79275 1.03151 1.20621 1.00291 1.02864 0.92573 1.18162 0.91697 0.95775 0.84767 1.84789 1.64534 1.45857 1.35185 1.21479 0.96069 1.00938 0.99228 1.20947 0.99212 0.98446 0.91372 1.21494 0.97877 0.99037 0.99257 1.18197 0.93314 0.93975 0.84814 1.84875 1.57599 1.52397 1.35126 1.23725 0.96406 0.92518 0.99973 1.77144 0.98080 1.12378 1.23629 1.48891 1.02758 1.07517 1.49884 1.20146 0.95704 0.73347 1.00208 1.21096 1.47981 0.99206 0.90024 0.90025 1.24793 0.94306 0.97406 0.95871 1.69866 1.45169 1.18230 1.18677 0.86904 0.79520 0.81036 0.82710 1.19495 1.20365 1.18783 0.89473 0.91143 0.88635 0.76973 0.90189 0.90828 0.74692 0.84968 0.84998 0.84927 0.74882 0.80712 0.92739 0.93422 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.00 0.34 -1.33 16 2 C 0.17 3.40 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -5.98 6.13 -105.06 -0.64 -6.63 16 4 C 0.61 10.08 7.81 -12.52 -0.10 9.99 16 5 O -0.55 -10.61 14.84 5.28 0.08 -10.53 16 6 N -0.73 -9.17 5.54 -62.56 -0.35 -9.52 16 7 C 0.18 1.99 5.36 -5.19 -0.03 1.96 16 8 C -0.16 -1.52 5.27 -104.33 -0.55 -2.07 16 9 C 0.14 1.21 6.67 -39.24 -0.26 0.95 16 10 O -0.49 -4.13 12.54 -19.42 -0.24 -4.37 16 11 C -0.16 -1.12 9.98 -39.41 -0.39 -1.51 16 12 C -0.08 -0.51 10.03 -39.63 -0.40 -0.91 16 13 C -0.16 -1.15 9.98 -39.41 -0.39 -1.54 16 14 C 0.14 1.25 6.67 -39.24 -0.26 0.99 16 15 O -0.49 -4.36 12.55 -19.40 -0.24 -4.61 16 16 C 0.06 1.06 11.50 -16.97 -0.20 0.86 16 17 N -0.29 -6.22 12.50 30.86 0.39 -5.84 16 18 N -0.31 -6.98 3.56 -57.78 -0.21 -7.18 16 19 C 0.22 5.26 5.03 -5.20 -0.03 5.24 16 20 C -0.55 -15.03 9.94 -34.44 -0.34 -15.38 16 21 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 22 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 23 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 24 Si 0.87 19.83 27.47 -169.99 -4.67 15.16 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 28 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.07 1.17 7.05 -51.93 -0.37 0.81 16 30 H 0.10 1.62 6.50 -51.93 -0.34 1.28 16 31 H 0.40 4.30 7.42 -40.82 -0.30 4.00 16 32 H 0.08 0.98 7.52 -51.93 -0.39 0.59 16 33 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 34 H 0.40 1.93 9.06 45.56 0.41 2.34 16 35 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.39 1.79 9.06 45.56 0.41 2.21 16 39 H 0.18 2.20 7.50 -52.49 -0.39 1.81 16 40 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 41 H 0.05 1.03 6.44 -51.93 -0.33 0.69 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -35.39 364.14 -6.24 -41.64 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.35 Total: 9.40 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.92 Total: -4.42 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.61 Total: -47.76 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.41 Total: -19.51 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.39 -6.24 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558534246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.952 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds