Wall clock time and date at job start Tue Mar 31 2020 15:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38040 * 126.29412 * 2 1 4 4 C 1.47432 * 126.41660 * 359.97438 * 3 2 1 5 5 O 1.21600 * 119.99463 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99924 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99664 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47014 * 179.97438 * 7 6 4 9 9 C 1.38629 * 120.05642 * 269.72472 * 8 7 6 10 10 O 1.35899 * 120.02991 * 359.97438 * 9 8 7 11 11 C 1.38776 * 119.94260 * 179.72031 * 9 8 7 12 12 C 1.38175 * 120.05230 * 0.55931 * 11 9 8 13 13 C 1.38165 * 120.11264 * 359.71481 * 12 11 9 14 14 C 1.38633 * 120.04884 * 89.99911 * 8 7 6 15 15 O 1.35892 * 120.03413 * 359.97438 * 14 8 7 16 16 C 1.41295 * 107.17272 * 180.24857 * 3 2 1 17 17 N 1.30455 * 108.01983 * 359.61027 * 16 3 2 18 18 N 1.34260 * 126.28863 * 180.02562 * 2 1 3 19 19 C 1.46494 * 125.75447 * 359.95597 * 18 2 1 20 20 C 1.50703 * 109.47278 * 90.00283 * 19 18 2 21 21 H 1.08004 * 119.99399 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00560 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00095 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99836 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46874 * 90.00259 * 24 22 20 26 26 H 1.48495 * 109.47519 * 210.00246 * 24 22 20 27 27 H 1.48507 * 109.47207 * 330.00548 * 24 22 20 28 28 H 1.09000 * 109.47014 * 89.97873 * 1 2 3 29 29 H 1.08999 * 109.47428 * 209.97883 * 1 2 3 30 30 H 1.09003 * 109.47019 * 329.98173 * 1 2 3 31 31 H 0.97000 * 120.00231 * 0.02562 * 6 4 3 32 32 H 1.09000 * 109.46864 * 60.00469 * 7 6 4 33 33 H 1.09000 * 109.47078 * 299.99722 * 7 6 4 34 34 H 0.96703 * 113.99918 * 89.99282 * 10 9 8 35 35 H 1.08007 * 119.97236 * 180.29838 * 11 9 8 36 36 H 1.08002 * 119.93956 * 179.74703 * 12 11 9 37 37 H 1.08003 * 119.97455 * 179.97438 * 13 12 11 38 38 H 0.96706 * 113.99958 * 89.99024 * 15 14 8 39 39 H 1.07992 * 125.99119 * 179.74331 * 16 3 2 40 40 H 1.09000 * 109.47616 * 210.00402 * 19 18 2 41 41 H 1.08997 * 109.47296 * 330.00606 * 19 18 2 42 42 H 0.97000 * 119.99613 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8001 3.5106 -0.0010 7 6 2.3646 4.9094 -0.0009 8 6 3.5719 5.8114 -0.0009 9 6 4.1247 6.2315 1.1990 10 8 3.5780 5.8308 2.3769 11 6 5.2400 7.0573 1.1964 12 6 5.7924 7.4702 -0.0009 13 6 5.2399 7.0574 -1.1982 14 6 4.1281 6.2269 -1.2008 15 8 3.5855 5.8208 -2.3787 16 6 3.6591 0.6498 -0.0059 17 7 3.6340 -0.6545 -0.0007 18 7 2.3016 -1.0822 -0.0005 19 6 1.8499 -2.4758 -0.0002 20 6 1.6942 -2.9537 -1.4209 21 1 1.9098 -2.2859 -2.2419 22 6 1.2757 -4.2431 -1.6727 23 7 1.1403 -4.6602 -2.9126 24 14 0.9022 -5.3978 -0.2527 25 1 -0.5285 -5.2717 0.1247 26 1 1.1841 -6.7964 -0.6646 27 1 1.7542 -5.0433 0.9109 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 3.7463 3.2972 -0.0013 32 1 1.7664 5.1036 0.8893 33 1 1.7657 5.1035 -0.8907 34 1 3.9482 5.0068 2.7222 35 1 5.6739 7.3810 2.1310 36 1 6.6580 8.1162 -0.0009 37 1 5.6733 7.3818 -2.1327 38 1 2.8993 6.4108 -2.7198 39 1 4.5449 1.2674 -0.0113 40 1 2.5848 -3.0959 0.5132 41 1 0.8916 -2.5470 0.5141 42 1 0.8462 -5.5674 -3.0896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558534246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:10 Heat of formation + Delta-G solvation = -53.109888 kcal Electronic energy + Delta-G solvation = -27362.764215 eV Core-core repulsion = 23308.630420 eV Total energy + Delta-G solvation = -4054.133795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36242 -41.33217 -39.92443 -38.76150 -36.66072 -35.94261 -35.71442 -34.01212 -32.89110 -32.03345 -30.22894 -29.72683 -28.40335 -26.86335 -24.90902 -23.53916 -23.46307 -22.48398 -21.27429 -20.58299 -19.83008 -19.29196 -18.61617 -18.38861 -17.39082 -17.21516 -16.73986 -16.56029 -16.42638 -16.06906 -15.83234 -15.55419 -15.50004 -15.22345 -14.79250 -14.41884 -14.20268 -14.07792 -13.83162 -13.74541 -13.67919 -13.59690 -13.14134 -13.02542 -12.98151 -12.66800 -12.56326 -12.16058 -11.85648 -11.76948 -11.66468 -11.50904 -10.92989 -10.90832 -10.28246 -10.12679 -9.78167 -9.54266 -9.45158 -8.43584 -6.55855 0.10328 0.19833 0.64255 1.29159 1.33698 1.35112 1.45248 1.62055 2.24373 2.29500 2.52764 2.69252 2.88880 3.04592 3.53127 3.58028 3.70416 3.72467 3.93445 4.09604 4.14128 4.18527 4.38513 4.45750 4.49836 4.62410 4.65055 4.69022 4.74287 4.81170 4.93288 5.04370 5.11823 5.17073 5.33471 5.39270 5.43529 5.45914 5.60708 5.72562 5.82434 6.19949 6.47124 6.58570 6.76253 6.77865 6.81932 7.08051 7.33305 8.73030 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.002418 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.285932 B =11577.513420 C =11737.272243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.148 3.852 3 C -0.329 4.329 4 C 0.605 3.395 5 O -0.583 6.583 6 N -0.706 5.706 7 C 0.181 3.819 8 C -0.177 4.177 9 C 0.136 3.864 10 O -0.506 6.506 11 C -0.161 4.161 12 C -0.072 4.072 13 C -0.163 4.163 14 C 0.134 3.866 15 O -0.508 6.508 16 C 0.081 3.919 17 N -0.332 5.332 18 N -0.338 5.338 19 C 0.233 3.767 20 C -0.554 4.554 21 H 0.025 0.975 22 C 0.023 3.977 23 N -0.936 5.936 24 Si 0.950 3.050 25 H -0.252 1.252 26 H -0.277 1.277 27 H -0.242 1.242 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.408 0.592 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.409 0.591 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.409 0.591 39 H 0.223 0.777 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 25.449 10.057 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.013 3.987 3 C -0.344 4.344 4 C 0.395 3.605 5 O -0.465 6.465 6 N -0.357 5.357 7 C 0.058 3.942 8 C -0.179 4.179 9 C 0.091 3.909 10 O -0.319 6.319 11 C -0.179 4.179 12 C -0.090 4.090 13 C -0.181 4.181 14 C 0.089 3.911 15 O -0.321 6.321 16 C -0.106 4.106 17 N -0.151 5.151 18 N -0.115 5.115 19 C 0.114 3.886 20 C -0.592 4.592 21 H 0.043 0.957 22 C -0.178 4.178 23 N -0.574 5.574 24 Si 0.771 3.229 25 H -0.176 1.176 26 H -0.202 1.202 27 H -0.165 1.165 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.243 0.757 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.268 0.732 35 H 0.168 0.832 36 H 0.179 0.821 37 H 0.165 0.835 38 H 0.269 0.731 39 H 0.239 0.761 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.243 24.291 9.943 27.511 hybrid contribution -0.352 -0.359 -0.344 0.609 sum 7.891 23.932 9.599 26.965 Atomic orbital electron populations 1.20596 0.85663 1.04616 1.03808 1.21974 0.96004 0.86652 0.94096 1.19948 0.93329 0.93051 1.28089 1.17121 0.85020 0.83790 0.74586 1.90679 1.17918 1.84690 1.53174 1.45533 1.09669 1.04810 1.75722 1.19717 0.93667 0.78597 1.02196 1.20456 1.00221 1.03765 0.93460 1.18300 0.92126 0.96096 0.84391 1.84755 1.65099 1.46841 1.35186 1.21710 0.95503 1.00329 1.00400 1.21309 0.99436 0.97672 0.90576 1.21706 0.97310 0.98660 1.00436 1.18356 0.93876 0.94417 0.84442 1.84822 1.58378 1.53541 1.35348 1.24444 0.97598 0.91622 0.96977 1.77089 0.98026 1.14342 1.25669 1.48765 1.03469 1.07314 1.51914 1.19901 0.96854 0.74495 0.97378 1.21189 1.48186 0.98880 0.90952 0.95692 1.25835 0.93597 0.99226 0.99100 1.70029 1.46600 1.19091 1.21633 0.85690 0.80484 0.77765 0.78995 1.17592 1.20237 1.16491 0.90521 0.89989 0.87794 0.75671 0.91167 0.91702 0.73158 0.83243 0.82135 0.83501 0.73097 0.76098 0.92466 0.91065 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.20 9.57 71.23 0.68 -2.52 16 2 C 0.15 6.01 7.01 42.14 0.30 6.30 16 3 C -0.33 -11.80 6.13 -20.15 -0.12 -11.92 16 4 C 0.61 19.80 7.81 86.67 0.68 20.47 16 5 O -0.58 -22.29 14.84 -4.03 -0.06 -22.35 16 6 N -0.71 -16.99 5.54 -470.09 -2.60 -19.60 16 7 C 0.18 4.00 5.36 85.63 0.46 4.46 16 8 C -0.18 -3.10 5.27 -19.67 -0.10 -3.20 16 9 C 0.14 2.08 6.67 22.49 0.15 2.23 16 10 O -0.51 -7.70 12.54 -92.41 -1.16 -8.86 16 11 C -0.16 -1.82 9.98 22.38 0.22 -1.59 16 12 C -0.07 -0.67 10.03 22.24 0.22 -0.45 16 13 C -0.16 -1.95 9.98 22.38 0.22 -1.73 16 14 C 0.13 2.16 6.67 22.49 0.15 2.31 16 15 O -0.51 -8.57 12.55 -92.33 -1.16 -9.73 16 16 C 0.08 2.68 11.50 85.65 0.99 3.67 16 17 N -0.33 -14.02 12.50 -56.27 -0.70 -14.72 16 18 N -0.34 -15.10 3.56 -336.72 -1.20 -16.30 16 19 C 0.23 10.91 5.03 85.64 0.43 11.34 16 20 C -0.55 -31.58 9.94 25.60 0.25 -31.32 16 21 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 22 C 0.02 1.26 5.47 84.65 0.46 1.72 16 23 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 24 Si 0.95 40.45 27.47 68.60 1.88 42.33 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 28 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.08 2.69 7.05 -2.39 -0.02 2.67 16 30 H 0.10 3.53 6.50 -2.39 -0.02 3.51 16 31 H 0.41 8.00 7.42 -92.71 -0.69 7.31 16 32 H 0.07 1.70 7.52 -2.39 -0.02 1.69 16 33 H 0.06 1.55 7.53 -2.39 -0.02 1.53 16 34 H 0.41 3.32 9.06 -74.06 -0.67 2.65 16 35 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.41 3.48 9.06 -74.05 -0.67 2.81 16 39 H 0.22 4.88 7.50 -2.91 -0.02 4.86 16 40 H 0.06 2.63 7.20 -2.39 -0.02 2.61 16 41 H 0.07 2.97 6.44 -2.39 -0.02 2.95 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -79.70 364.14 -0.68 -80.38 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.97 Total: 25.60 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.99 Total: -0.22 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.21 Total: -107.16 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.38 Total: -40.93 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Total: -79.70 -0.68 -80.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558534246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.268 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds