Wall clock time and date at job start Tue Mar 31 2020 16:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46721 * 237.35216 * 3 2 1 5 5 C 1.53001 * 109.47043 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47294 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99959 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00234 * 179.97438 * 6 5 4 9 9 N 1.40097 * 120.00320 * 179.97438 * 8 6 5 10 10 C 1.34776 * 120.00487 * 180.02562 * 9 8 6 11 11 O 1.21587 * 120.00243 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99573 * 0.02562 * 10 9 8 13 13 C 1.39945 * 119.99451 * 174.71201 * 12 10 9 14 14 C 1.38953 * 120.03814 * 326.35111 * 13 12 10 15 15 C 1.38165 * 120.06801 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13335 * 359.75043 * 15 14 13 17 17 C 1.38910 * 120.07242 * 0.50364 * 16 15 14 18 18 O 1.35747 * 120.03085 * 179.77096 * 17 16 15 19 19 C 1.34838 * 116.99839 * 173.82685 * 18 17 16 20 20 H 1.07997 * 119.99706 * 354.59457 * 19 18 17 21 21 C 1.38647 * 120.00051 * 174.59218 * 19 18 17 22 22 N 1.31563 * 120.00375 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99800 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47536 * 60.00340 * 23 21 19 25 25 H 1.48500 * 109.47148 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47072 * 300.00017 * 23 21 19 27 27 C 1.38714 * 120.03153 * 146.37865 * 13 12 10 28 28 H 4.44648 * 5.63266 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47104 * 117.35616 * 3 2 1 30 30 H 1.08998 * 109.47494 * 357.35196 * 3 2 1 31 31 H 1.08998 * 109.47477 * 60.00567 * 4 3 2 32 32 H 1.09003 * 109.47385 * 300.00632 * 4 3 2 33 33 H 1.09000 * 109.47376 * 60.00035 * 5 4 3 34 34 H 1.08998 * 109.46900 * 299.99812 * 5 4 3 35 35 H 0.97002 * 120.00032 * 0.02562 * 8 6 5 36 36 H 0.97001 * 120.00223 * 0.02562 * 9 8 6 37 37 H 0.96999 * 120.00121 * 354.71897 * 12 10 9 38 38 H 1.08001 * 119.96944 * 0.02562 * 14 13 12 39 39 H 1.07995 * 119.93625 * 180.02562 * 15 14 13 40 40 H 1.08006 * 119.96495 * 180.27876 * 16 15 14 41 41 H 0.96990 * 119.99890 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.06726 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7791 1.2146 5 6 4.6856 0.7804 1.2143 6 6 5.1876 1.5466 2.4110 7 8 4.3992 2.0432 3.1874 8 7 6.5125 1.6800 2.6185 9 7 6.9791 2.3927 3.7307 10 6 8.3041 2.5266 3.9380 11 8 8.7091 3.1447 4.9035 12 7 9.1803 1.9751 3.0748 13 6 10.5520 2.2064 3.2270 14 6 11.0017 3.4274 3.7146 15 6 12.3559 3.6566 3.8646 16 6 13.2668 2.6713 3.5354 17 6 12.8239 1.4505 3.0425 18 8 13.7198 0.4847 2.7149 19 6 13.2221 -0.7186 2.3647 20 1 12.1610 -0.9060 2.4376 21 6 14.0726 -1.7151 1.9109 22 7 15.3653 -1.4870 1.8226 23 14 13.3831 -3.3823 1.4265 24 1 12.4076 -3.2120 0.3199 25 1 14.4905 -4.2649 0.9792 26 1 12.7034 -3.9955 2.5956 27 6 11.4644 1.2171 2.8907 28 1 -1.0501 0.0000 -0.0004 29 1 3.0092 0.4731 -0.9127 30 1 3.0099 -1.0257 0.0475 31 1 2.7926 0.3067 2.1274 32 1 2.7917 1.8055 1.1672 33 1 5.0484 1.2530 0.3016 34 1 5.0498 -0.2459 1.2616 35 1 7.1431 1.2831 1.9974 36 1 6.3486 2.7899 4.3517 37 1 8.8600 1.4181 2.3482 38 1 10.2919 4.1981 3.9766 39 1 12.7030 4.6063 4.2441 40 1 14.3246 2.8518 3.6580 41 1 15.9601 -2.1841 1.5048 42 1 11.1174 0.2673 2.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562196072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:21 Heat of formation + Delta-G solvation = 23.944226 kcal Electronic energy + Delta-G solvation = -26271.310713 eV Core-core repulsion = 22220.518235 eV Total energy + Delta-G solvation = -4050.792477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99118 -39.90786 -38.78431 -36.72179 -36.26367 -35.75750 -34.26501 -32.91185 -32.29169 -31.31414 -29.37523 -28.57340 -28.05738 -25.37749 -23.35253 -22.92716 -21.94885 -21.15776 -20.54154 -19.38221 -18.68491 -18.09958 -17.85736 -17.31567 -16.59812 -16.30391 -15.71311 -15.49327 -15.16934 -15.01470 -14.85368 -14.71142 -14.23372 -14.16892 -14.03218 -13.62021 -13.17135 -13.13648 -13.04772 -12.46960 -12.11728 -11.94239 -11.71089 -11.58859 -11.50528 -11.26758 -11.09574 -10.82344 -10.69283 -10.59396 -10.51067 -10.49627 -10.26140 -9.82586 -9.56349 -8.86382 -8.70547 -7.81783 -7.22294 -6.49980 -4.10165 1.48740 1.92512 2.08942 2.33115 2.42597 2.46157 2.82131 3.03642 3.06771 3.10421 3.11575 3.84371 3.90500 3.96822 4.46722 4.47677 4.52927 4.62074 4.88973 4.95540 5.04833 5.05166 5.13497 5.21799 5.58220 5.61312 5.63100 5.78875 5.91591 5.93264 6.05202 6.07609 6.13498 6.34521 6.61600 6.88763 6.95779 6.97759 7.07996 7.23880 7.26260 7.35719 7.46367 7.73306 7.92599 7.95023 8.32381 8.94917 9.64982 10.67821 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.002456 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.552661 B =11396.949088 C =13911.754454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.133 4.133 6 C 0.515 3.485 7 O -0.533 6.533 8 N -0.531 5.531 9 N -0.534 5.534 10 C 0.712 3.288 11 O -0.549 6.549 12 N -0.678 5.678 13 C 0.193 3.807 14 C -0.205 4.205 15 C -0.061 4.061 16 C -0.198 4.198 17 C 0.169 3.831 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.089 0.911 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.256 4.256 28 H 0.216 0.784 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.421 0.579 36 H 0.443 0.557 37 H 0.397 0.603 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.271 0.729 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.952 2.414 -5.652 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.188 4.188 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.174 4.174 6 C 0.302 3.698 7 O -0.408 6.408 8 N -0.283 5.283 9 N -0.291 5.291 10 C 0.412 3.588 11 O -0.420 6.420 12 N -0.327 5.327 13 C 0.100 3.900 14 C -0.226 4.226 15 C -0.080 4.080 16 C -0.218 4.218 17 C 0.115 3.885 18 O -0.078 6.078 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.278 4.278 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.263 0.737 36 H 0.289 0.711 37 H 0.232 0.768 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.635 3.058 -4.517 22.312 hybrid contribution -0.736 -1.294 -0.722 1.655 sum -22.372 1.764 -5.240 23.045 Atomic orbital electron populations 1.24948 0.96055 1.00940 1.00646 1.23050 0.94551 1.00533 1.00638 1.18750 0.84991 1.01934 0.99359 1.21296 0.92178 1.02049 0.98264 1.21654 0.97863 1.01799 0.96087 1.20988 0.80033 0.80935 0.87857 1.90764 1.54454 1.48417 1.47132 1.45059 1.07518 1.54385 1.21321 1.44667 1.05178 1.57153 1.22145 1.15691 0.79391 0.80621 0.83125 1.91070 1.74506 1.46367 1.30105 1.42559 1.05479 1.53160 1.31491 1.17155 0.79589 0.93697 0.99596 1.20565 0.95730 0.96386 1.09870 1.20537 0.92144 0.97777 0.97582 1.20275 0.99841 0.92992 1.08714 1.19056 0.88161 0.89377 0.91932 1.84027 1.31420 1.18895 1.73475 1.21200 0.94256 0.86103 1.45355 0.89336 1.25281 0.95175 0.99498 0.96530 1.70022 1.02451 1.34299 1.42761 0.85798 0.78415 0.80210 0.79076 1.19575 1.20256 1.19556 1.20753 0.92718 0.99772 1.14513 0.76689 0.89244 0.89221 0.90446 0.90466 0.87698 0.87673 0.73721 0.71093 0.76803 0.86178 0.86476 0.86281 0.91914 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.19 -1.41 13.34 -37.12 -0.50 -1.91 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.23 16 4 C -0.10 -0.57 4.46 -26.73 -0.12 -0.69 16 5 C -0.13 -0.53 5.70 -27.88 -0.16 -0.69 16 6 C 0.52 4.16 7.95 -10.99 -0.09 4.07 16 7 O -0.53 -6.46 15.82 5.55 0.09 -6.38 16 8 N -0.53 -4.15 6.25 31.22 0.20 -3.96 16 9 N -0.53 -5.99 6.26 27.64 0.17 -5.81 16 10 C 0.71 10.32 8.41 -86.91 -0.73 9.58 16 11 O -0.55 -10.12 14.88 5.29 0.08 -10.04 16 12 N -0.68 -9.38 5.30 -14.24 -0.08 -9.45 16 13 C 0.19 3.48 6.27 -83.71 -0.52 2.96 16 14 C -0.20 -3.78 8.65 -39.34 -0.34 -4.12 16 15 C -0.06 -1.12 10.03 -39.63 -0.40 -1.52 16 16 C -0.20 -4.10 9.99 -39.36 -0.39 -4.50 16 17 C 0.17 3.93 6.64 -39.14 -0.26 3.67 16 18 O -0.17 -4.81 9.76 0.03 0.00 -4.81 16 19 C -0.39 -10.47 9.44 30.88 0.29 -10.18 16 20 H 0.09 2.14 5.30 -52.49 -0.28 1.87 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 22 N -0.86 -24.46 13.67 55.48 0.76 -23.70 16 23 Si 0.94 19.50 29.55 -169.99 -5.02 14.47 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 C -0.26 -5.21 9.04 -39.21 -0.35 -5.57 16 28 H 0.22 0.84 7.80 -54.08 -0.42 0.42 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.56 8.10 -51.93 -0.42 0.13 16 32 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.42 2.12 6.72 -182.60 -1.23 0.89 16 36 H 0.44 5.11 8.10 -182.60 -1.48 3.63 16 37 H 0.40 3.96 6.76 -40.82 -0.28 3.69 16 38 H 0.12 2.19 6.43 -52.49 -0.34 1.85 16 39 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.13 2.54 5.71 -52.49 -0.30 2.24 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -35.92 373.21 -8.28 -44.20 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.83 Total: 8.91 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.27 Total: -9.06 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 1.05 Total: -42.93 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.17 Total: -21.22 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.92 -8.28 -44.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562196072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.146 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds