Wall clock time and date at job start Tue Mar 31 2020 16:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46721 * 237.35216 * 3 2 1 5 5 C 1.53001 * 109.47043 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47294 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99959 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00234 * 179.97438 * 6 5 4 9 9 N 1.40097 * 120.00320 * 179.97438 * 8 6 5 10 10 C 1.34776 * 120.00487 * 180.02562 * 9 8 6 11 11 O 1.21587 * 120.00243 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99573 * 0.02562 * 10 9 8 13 13 C 1.39945 * 119.99451 * 174.71201 * 12 10 9 14 14 C 1.38953 * 120.03814 * 326.35111 * 13 12 10 15 15 C 1.38165 * 120.06801 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13335 * 359.75043 * 15 14 13 17 17 C 1.38910 * 120.07242 * 0.50364 * 16 15 14 18 18 O 1.35747 * 120.03085 * 179.77096 * 17 16 15 19 19 C 1.34838 * 116.99839 * 173.82685 * 18 17 16 20 20 H 1.07997 * 119.99706 * 354.59457 * 19 18 17 21 21 C 1.38647 * 120.00051 * 174.59218 * 19 18 17 22 22 N 1.31563 * 120.00375 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99800 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47536 * 60.00340 * 23 21 19 25 25 H 1.48500 * 109.47148 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47072 * 300.00017 * 23 21 19 27 27 C 1.38714 * 120.03153 * 146.37865 * 13 12 10 28 28 H 4.44648 * 5.63266 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47104 * 117.35616 * 3 2 1 30 30 H 1.08998 * 109.47494 * 357.35196 * 3 2 1 31 31 H 1.08998 * 109.47477 * 60.00567 * 4 3 2 32 32 H 1.09003 * 109.47385 * 300.00632 * 4 3 2 33 33 H 1.09000 * 109.47376 * 60.00035 * 5 4 3 34 34 H 1.08998 * 109.46900 * 299.99812 * 5 4 3 35 35 H 0.97002 * 120.00032 * 0.02562 * 8 6 5 36 36 H 0.97001 * 120.00223 * 0.02562 * 9 8 6 37 37 H 0.96999 * 120.00121 * 354.71897 * 12 10 9 38 38 H 1.08001 * 119.96944 * 0.02562 * 14 13 12 39 39 H 1.07995 * 119.93625 * 180.02562 * 15 14 13 40 40 H 1.08006 * 119.96495 * 180.27876 * 16 15 14 41 41 H 0.96990 * 119.99890 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.06726 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7791 1.2146 5 6 4.6856 0.7804 1.2143 6 6 5.1876 1.5466 2.4110 7 8 4.3992 2.0432 3.1874 8 7 6.5125 1.6800 2.6185 9 7 6.9791 2.3927 3.7307 10 6 8.3041 2.5266 3.9380 11 8 8.7091 3.1447 4.9035 12 7 9.1803 1.9751 3.0748 13 6 10.5520 2.2064 3.2270 14 6 11.0017 3.4274 3.7146 15 6 12.3559 3.6566 3.8646 16 6 13.2668 2.6713 3.5354 17 6 12.8239 1.4505 3.0425 18 8 13.7198 0.4847 2.7149 19 6 13.2221 -0.7186 2.3647 20 1 12.1610 -0.9060 2.4376 21 6 14.0726 -1.7151 1.9109 22 7 15.3653 -1.4870 1.8226 23 14 13.3831 -3.3823 1.4265 24 1 12.4076 -3.2120 0.3199 25 1 14.4905 -4.2649 0.9792 26 1 12.7034 -3.9955 2.5956 27 6 11.4644 1.2171 2.8907 28 1 -1.0501 0.0000 -0.0004 29 1 3.0092 0.4731 -0.9127 30 1 3.0099 -1.0257 0.0475 31 1 2.7926 0.3067 2.1274 32 1 2.7917 1.8055 1.1672 33 1 5.0484 1.2530 0.3016 34 1 5.0498 -0.2459 1.2616 35 1 7.1431 1.2831 1.9974 36 1 6.3486 2.7899 4.3517 37 1 8.8600 1.4181 2.3482 38 1 10.2919 4.1981 3.9766 39 1 12.7030 4.6063 4.2441 40 1 14.3246 2.8518 3.6580 41 1 15.9601 -2.1841 1.5048 42 1 11.1174 0.2673 2.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562196072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:20 Heat of formation + Delta-G solvation = -1.535965 kcal Electronic energy + Delta-G solvation = -26272.415617 eV Core-core repulsion = 22220.518235 eV Total energy + Delta-G solvation = -4051.897381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07925 -40.92242 -40.30122 -38.25206 -37.11659 -36.40363 -35.62234 -34.18657 -33.45436 -32.14389 -30.91363 -30.06731 -28.59185 -27.27078 -24.30370 -23.84610 -23.51618 -21.94106 -21.77536 -20.50410 -19.63024 -19.31342 -19.08569 -18.43730 -17.31328 -17.24906 -16.88488 -16.75214 -16.55524 -16.28544 -15.90598 -15.73153 -15.53655 -15.39914 -15.35393 -14.64136 -14.55776 -14.19000 -13.64469 -13.59051 -13.49953 -13.30047 -12.83688 -12.69584 -12.54635 -12.50696 -12.37985 -12.11756 -11.91615 -11.81372 -11.38866 -11.30827 -11.22848 -11.04556 -10.93408 -10.70032 -9.65356 -9.30572 -8.85595 -8.42111 -6.11072 0.40890 0.66604 0.75058 1.38247 1.40042 1.50653 1.56419 1.71481 1.88520 1.92132 1.95380 2.21833 2.86740 3.20147 3.27659 3.52213 3.55525 3.82554 4.12304 4.12881 4.16824 4.34408 4.44547 4.49872 4.61838 4.66100 4.70526 4.73089 4.85212 5.01234 5.14035 5.18003 5.21388 5.22987 5.26795 5.37037 5.41143 5.66259 5.68014 5.70533 6.04852 6.16570 6.22312 6.49649 6.74931 7.01955 7.06562 7.25381 7.81556 8.80481 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.002456 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.552661 B =11396.949088 C =13911.754454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.214 4.214 3 C -0.012 4.012 4 C -0.096 4.096 5 C -0.123 4.123 6 C 0.515 3.485 7 O -0.577 6.577 8 N -0.520 5.520 9 N -0.526 5.526 10 C 0.715 3.285 11 O -0.591 6.591 12 N -0.665 5.665 13 C 0.202 3.798 14 C -0.200 4.200 15 C -0.051 4.051 16 C -0.212 4.212 17 C 0.136 3.864 18 O -0.226 6.226 19 C -0.411 4.411 20 H 0.106 0.894 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.248 1.248 25 H -0.278 1.278 26 H -0.261 1.261 27 C -0.254 4.254 28 H 0.236 0.764 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.437 0.563 36 H 0.443 0.557 37 H 0.417 0.583 38 H 0.130 0.870 39 H 0.153 0.847 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.272 1.847 -6.916 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.214 4.214 3 C -0.048 4.048 4 C -0.134 4.134 5 C -0.163 4.163 6 C 0.304 3.696 7 O -0.454 6.454 8 N -0.275 5.275 9 N -0.281 5.281 10 C 0.415 3.585 11 O -0.466 6.466 12 N -0.315 5.315 13 C 0.107 3.893 14 C -0.221 4.221 15 C -0.070 4.070 16 C -0.232 4.232 17 C 0.084 3.916 18 O -0.133 6.133 19 C -0.487 4.487 20 H 0.123 0.877 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.837 3.163 24 H -0.172 1.172 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.276 4.276 28 H 0.252 0.748 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.281 0.719 36 H 0.289 0.711 37 H 0.256 0.744 38 H 0.148 0.852 39 H 0.170 0.830 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.029 2.504 -5.818 24.850 hybrid contribution -0.250 -0.867 -0.242 0.934 sum -24.279 1.637 -6.060 25.077 Atomic orbital electron populations 1.25705 0.97191 1.00909 1.00533 1.23892 0.95949 1.00717 1.00855 1.18879 0.83478 1.02985 0.99497 1.21199 0.93507 1.00811 0.97900 1.21757 0.96290 1.03155 0.95109 1.21859 0.79340 0.80131 0.88251 1.90761 1.55509 1.50277 1.48898 1.45201 1.08033 1.53923 1.20308 1.44410 1.04005 1.56610 1.23069 1.15646 0.80124 0.80215 0.82551 1.91042 1.75672 1.48079 1.31760 1.42284 1.03794 1.53377 1.32087 1.17108 0.81165 0.92873 0.98131 1.20873 0.96053 0.96647 1.08481 1.20899 0.91671 0.98386 0.96014 1.20492 1.00567 0.93006 1.09159 1.19564 0.89208 0.89723 0.93082 1.83998 1.33376 1.20002 1.75882 1.21763 0.95235 0.86464 1.45244 0.87692 1.26606 0.95386 1.03872 0.96270 1.70186 1.04288 1.35949 1.45383 0.84652 0.77941 0.74242 0.79430 1.17230 1.20308 1.18516 1.20785 0.91986 1.00492 1.14325 0.74771 0.87298 0.87417 0.92552 0.92423 0.84346 0.84520 0.71906 0.71069 0.74396 0.85250 0.82968 0.86343 0.91940 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.01 19.25 74.32 1.43 -1.58 16 2 C -0.21 -2.96 13.34 31.12 0.42 -2.55 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.08 16 4 C -0.10 -0.91 4.46 30.59 0.14 -0.77 16 5 C -0.12 -0.52 5.70 29.85 0.17 -0.35 16 6 C 0.52 6.97 7.95 87.66 0.70 7.67 16 7 O -0.58 -13.37 15.82 -3.04 -0.05 -13.41 16 8 N -0.52 -6.51 6.25 -173.54 -1.09 -7.60 16 9 N -0.53 -10.66 6.26 -184.74 -1.16 -11.82 16 10 C 0.71 19.12 8.41 179.05 1.51 20.63 16 11 O -0.59 -20.84 14.88 -3.99 -0.06 -20.90 16 12 N -0.66 -16.56 5.30 -317.22 -1.68 -18.24 16 13 C 0.20 6.89 6.27 38.13 0.24 7.13 16 14 C -0.20 -6.94 8.65 22.42 0.19 -6.75 16 15 C -0.05 -1.77 10.03 22.24 0.22 -1.55 16 16 C -0.21 -8.81 9.99 22.41 0.22 -8.59 16 17 C 0.14 6.41 6.64 22.56 0.15 6.56 16 18 O -0.23 -12.94 9.76 -22.79 -0.22 -13.17 16 19 C -0.41 -22.36 9.44 67.92 0.64 -21.72 16 20 H 0.11 5.07 5.30 -2.91 -0.02 5.05 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 22 N -0.92 -54.39 13.67 21.61 0.30 -54.10 16 23 Si 1.02 39.75 29.55 68.60 2.03 41.78 16 24 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 25 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 26 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 27 C -0.25 -10.14 9.04 22.51 0.20 -9.94 16 28 H 0.24 1.62 7.80 -4.41 -0.03 1.59 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.14 -0.24 8.14 -2.39 -0.02 -0.25 16 34 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.44 2.59 6.72 -213.32 -1.43 1.16 16 36 H 0.44 9.61 8.10 -213.32 -1.73 7.89 16 37 H 0.42 6.85 6.76 -92.71 -0.63 6.22 16 38 H 0.13 4.37 6.43 -2.91 -0.02 4.35 16 39 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.27 14.79 8.31 -92.72 -0.77 14.02 16 42 H 0.14 5.14 5.71 -2.91 -0.02 5.12 16 Total: -1.00 -83.10 373.21 2.24 -80.85 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -2.69 Total: 29.11 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 6.86 Total: -12.52 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -3.63 Total: -91.75 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.33 Total: -47.48 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -83.10 2.24 -80.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562196072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.316 kcal (2) G-P(sol) polarization free energy of solvation -83.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds