Wall clock time and date at job start Tue Mar 31 2020 16:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47401 * 55.00737 * 3 2 1 5 5 C 1.53007 * 109.46840 * 175.00416 * 3 2 1 6 6 N 1.46495 * 109.47016 * 175.00319 * 5 3 2 7 7 C 1.34783 * 120.00024 * 180.02562 * 6 5 3 8 8 O 1.21513 * 119.99590 * 359.97438 * 7 6 5 9 9 C 1.48167 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.39306 * 119.72109 * 179.97438 * 9 7 6 11 11 C 1.38590 * 119.05924 * 180.02562 * 10 9 7 12 12 C 1.38625 * 118.48819 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.32522 * 180.02562 * 12 11 10 14 14 F 1.39898 * 109.46980 * 179.97438 * 13 12 11 15 15 F 1.39900 * 109.47140 * 299.97368 * 13 12 11 16 16 F 1.39899 * 109.47410 * 59.97465 * 13 12 11 17 17 C 1.38558 * 119.35395 * 359.97438 * 12 11 10 18 18 N 1.31524 * 120.90318 * 359.97438 * 17 12 11 19 19 N 1.46498 * 109.47294 * 294.99853 * 3 2 1 20 20 C 1.36937 * 119.99970 * 85.00180 * 19 3 2 21 21 H 1.08005 * 119.99797 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00292 * 179.97438 * 20 19 3 23 23 N 1.31621 * 119.99989 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99780 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47188 * 89.99956 * 24 22 20 26 26 H 1.48505 * 109.46832 * 209.99672 * 24 22 20 27 27 H 1.48496 * 109.47334 * 329.99711 * 24 22 20 28 28 H 1.09006 * 109.46754 * 299.99863 * 1 2 3 29 29 H 1.08994 * 109.47478 * 59.99766 * 1 2 3 30 30 H 1.09005 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46880 * 239.99918 * 2 1 3 32 32 H 1.09000 * 109.46628 * 120.00224 * 2 1 3 33 33 H 1.08994 * 109.47125 * 54.99482 * 5 3 2 34 34 H 1.08999 * 109.46724 * 294.99718 * 5 3 2 35 35 H 0.96999 * 120.00660 * 359.97438 * 6 5 3 36 36 H 1.07997 * 120.47548 * 0.02652 * 10 9 7 37 37 H 1.07996 * 120.76084 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.55353 * 179.97438 * 17 12 11 39 39 H 0.97000 * 120.00019 * 265.00530 * 19 3 2 40 40 H 0.97003 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 4.0630 2.8167 0.0059 7 6 5.3858 3.0629 0.0857 8 8 6.1650 2.1464 0.2574 9 6 5.8897 4.4509 -0.0359 10 6 7.2579 4.6988 0.0480 11 6 7.7142 6.0023 -0.0671 12 6 6.7857 7.0131 -0.2616 13 6 7.2362 8.4452 -0.3928 14 9 6.1215 9.2693 -0.5812 15 9 7.9097 8.8307 0.7713 16 9 8.0956 8.5652 -1.4902 17 6 5.4394 6.6938 -0.3353 18 7 5.0337 5.4477 -0.2238 19 7 1.6524 2.0975 -1.2518 20 6 0.4156 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5380 22 6 0.0485 3.2945 -2.5547 23 7 -1.1405 3.8477 -2.6673 24 14 1.2415 3.3440 -3.9912 25 1 1.0379 2.1463 -4.8452 26 1 1.0001 4.5704 -4.7931 27 1 2.6347 3.3547 -3.4775 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9953 0.8310 -0.6660 34 1 3.8499 1.0377 1.0959 35 1 3.4411 3.5483 -0.1315 36 1 7.9534 3.8867 0.2005 37 1 8.7690 6.2258 -0.0058 38 1 4.7132 7.4788 -0.4863 39 1 2.2719 2.1231 -1.9978 40 1 -1.3969 4.2821 -3.4959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567970274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:46 Heat of formation + Delta-G solvation = -139.586333 kcal Electronic energy + Delta-G solvation = -28044.120534 eV Core-core repulsion = 23444.380099 eV Total energy + Delta-G solvation = -4599.740435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.55374 -48.06302 -48.01705 -41.00582 -39.16809 -36.93467 -34.18624 -33.42716 -32.36656 -32.27499 -30.29172 -28.59236 -26.91717 -24.44944 -23.99981 -23.06710 -22.32147 -20.69525 -20.17330 -19.03124 -18.88532 -18.81058 -18.31211 -17.34497 -17.01040 -15.72023 -15.55368 -15.30067 -15.10199 -14.88207 -14.75890 -14.67308 -14.43973 -14.21455 -14.15958 -14.12568 -13.93135 -13.66028 -13.56811 -13.21022 -12.92287 -12.82966 -12.49117 -12.30928 -11.61448 -11.19769 -10.99655 -10.77797 -10.61023 -10.47049 -10.43757 -10.33346 -10.03604 -9.86241 -9.83459 -9.50282 -9.00001 -8.89973 -7.36102 -5.82113 -3.18315 -0.07538 0.67851 2.17575 2.41692 3.02459 3.26329 3.33943 3.37631 3.42441 3.43129 3.55082 3.84884 3.99309 4.18940 4.41745 4.52166 4.54541 4.73495 5.14789 5.21734 5.24652 5.31201 5.39616 5.44154 5.71580 5.84004 5.86612 5.91657 5.98440 6.23536 6.39975 6.47830 6.55095 6.67290 6.90434 7.17972 7.27687 7.66975 7.92747 8.18665 8.35831 9.13454 9.86050 10.04674 11.35476 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003319 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.295423 B = 8434.094183 C = 9863.550663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.108 3.892 6 N -0.688 5.688 7 C 0.561 3.439 8 O -0.539 6.539 9 C 0.119 3.881 10 C -0.118 4.118 11 C -0.028 4.028 12 C -0.228 4.228 13 C 0.517 3.483 14 F -0.171 7.171 15 F -0.174 7.174 16 F -0.173 7.173 17 C 0.155 3.845 18 N -0.446 5.446 19 N -0.746 5.746 20 C -0.242 4.242 21 H 0.095 0.905 22 C 0.010 3.990 23 N -0.930 5.930 24 Si 0.879 3.121 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.422 0.578 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.179 0.821 39 H 0.362 0.638 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.313 5.421 6.946 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.016 4.016 6 N -0.339 5.339 7 C 0.344 3.656 8 O -0.416 6.416 9 C -0.020 4.020 10 C -0.138 4.138 11 C -0.054 4.054 12 C -0.232 4.232 13 C 0.462 3.538 14 F -0.152 7.152 15 F -0.155 7.155 16 F -0.155 7.155 17 C -0.005 4.005 18 N -0.156 5.156 19 N -0.390 5.390 20 C -0.372 4.372 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.577 5.577 24 Si 0.710 3.290 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.196 0.804 39 H 0.195 0.805 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.683 4.649 7.058 19.599 hybrid contribution 1.427 0.942 -1.271 2.130 sum 19.110 5.591 5.787 20.735 Atomic orbital electron populations 1.21783 0.95132 0.99741 1.03846 1.22036 0.97439 0.97685 1.00141 1.20553 0.89504 0.93165 0.90957 0.91801 1.21877 0.95990 0.81954 1.01827 1.45948 1.06808 1.11621 1.69551 1.17778 0.83296 0.86328 0.78191 1.90780 1.56317 1.44172 1.50355 1.21678 0.90902 0.94065 0.95342 1.22143 0.96099 0.97487 0.98099 1.21374 1.00339 0.91473 0.92177 1.21285 0.97709 0.93038 1.11169 1.18006 0.75202 0.86468 0.74108 1.93206 1.52372 1.74644 1.94993 1.93237 1.80855 1.92413 1.49007 1.93241 1.71050 1.96605 1.54577 1.22851 0.92525 0.94112 0.90969 1.67897 1.38038 0.99564 1.10144 1.42825 1.16886 1.67657 1.11629 1.19039 0.90489 1.27769 0.99876 0.88703 1.24631 0.96303 1.00215 0.97492 1.69689 1.19270 1.42035 1.26740 0.86641 0.81199 0.77290 0.83889 1.21243 1.21849 1.20396 0.93843 0.89305 0.94831 0.92613 0.93496 0.91393 0.90920 0.73885 0.82071 0.82898 0.80386 0.80528 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.12 5.61 -26.73 -0.15 -2.27 16 3 C 0.17 2.90 2.59 -67.93 -0.18 2.72 16 4 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 5 C 0.11 1.65 5.23 -4.04 -0.02 1.63 16 6 N -0.69 -10.94 5.38 -61.15 -0.33 -11.27 16 7 C 0.56 8.68 7.81 -12.18 -0.10 8.58 16 8 O -0.54 -9.16 16.32 5.35 0.09 -9.07 16 9 C 0.12 1.58 6.75 -83.01 -0.56 1.02 16 10 C -0.12 -1.22 9.63 -39.05 -0.38 -1.59 16 11 C -0.03 -0.24 9.76 -39.31 -0.38 -0.62 16 12 C -0.23 -2.17 5.39 -104.36 -0.56 -2.73 16 13 C 0.52 4.64 3.33 36.01 0.12 4.76 16 14 F -0.17 -1.62 16.00 2.25 0.04 -1.58 16 15 F -0.17 -1.56 17.24 2.25 0.04 -1.52 16 16 F -0.17 -1.62 17.24 2.25 0.04 -1.58 16 17 C 0.16 1.71 10.59 -17.57 -0.19 1.53 16 18 N -0.45 -6.06 9.54 -9.80 -0.09 -6.15 16 19 N -0.75 -15.87 4.31 -53.42 -0.23 -16.10 16 20 C -0.24 -6.19 8.23 -15.06 -0.12 -6.31 16 21 H 0.10 2.60 7.56 -52.48 -0.40 2.21 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 23 N -0.93 -27.84 13.97 55.49 0.78 -27.06 16 24 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.42 7.14 7.47 -40.82 -0.30 6.83 16 36 H 0.16 1.46 7.64 -52.49 -0.40 1.06 16 37 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.18 1.65 7.16 -52.49 -0.38 1.27 16 39 H 0.36 7.87 5.66 -40.82 -0.23 7.64 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -30.16 352.86 -5.91 -36.07 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.57 Total: 11.63 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.27 Total: 4.65 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.12 Total: -60.59 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.16 -5.91 -36.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567970274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.515 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds