Wall clock time and date at job start Tue Mar 31 2020 16:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47401 * 55.00737 * 3 2 1 5 5 C 1.53007 * 109.46840 * 175.00416 * 3 2 1 6 6 N 1.46495 * 109.47016 * 175.00319 * 5 3 2 7 7 C 1.34783 * 120.00024 * 180.02562 * 6 5 3 8 8 O 1.21513 * 119.99590 * 359.97438 * 7 6 5 9 9 C 1.48167 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.39306 * 119.72109 * 179.97438 * 9 7 6 11 11 C 1.38590 * 119.05924 * 180.02562 * 10 9 7 12 12 C 1.38625 * 118.48819 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.32522 * 180.02562 * 12 11 10 14 14 F 1.39898 * 109.46980 * 179.97438 * 13 12 11 15 15 F 1.39900 * 109.47140 * 299.97368 * 13 12 11 16 16 F 1.39899 * 109.47410 * 59.97465 * 13 12 11 17 17 C 1.38558 * 119.35395 * 359.97438 * 12 11 10 18 18 N 1.31524 * 120.90318 * 359.97438 * 17 12 11 19 19 N 1.46498 * 109.47294 * 294.99853 * 3 2 1 20 20 C 1.36937 * 119.99970 * 85.00180 * 19 3 2 21 21 H 1.08005 * 119.99797 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00292 * 179.97438 * 20 19 3 23 23 N 1.31621 * 119.99989 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99780 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47188 * 89.99956 * 24 22 20 26 26 H 1.48505 * 109.46832 * 209.99672 * 24 22 20 27 27 H 1.48496 * 109.47334 * 329.99711 * 24 22 20 28 28 H 1.09006 * 109.46754 * 299.99863 * 1 2 3 29 29 H 1.08994 * 109.47478 * 59.99766 * 1 2 3 30 30 H 1.09005 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46880 * 239.99918 * 2 1 3 32 32 H 1.09000 * 109.46628 * 120.00224 * 2 1 3 33 33 H 1.08994 * 109.47125 * 54.99482 * 5 3 2 34 34 H 1.08999 * 109.46724 * 294.99718 * 5 3 2 35 35 H 0.96999 * 120.00660 * 359.97438 * 6 5 3 36 36 H 1.07997 * 120.47548 * 0.02652 * 10 9 7 37 37 H 1.07996 * 120.76084 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.55353 * 179.97438 * 17 12 11 39 39 H 0.97000 * 120.00019 * 265.00530 * 19 3 2 40 40 H 0.97003 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 4.0630 2.8167 0.0059 7 6 5.3858 3.0629 0.0857 8 8 6.1650 2.1464 0.2574 9 6 5.8897 4.4509 -0.0359 10 6 7.2579 4.6988 0.0480 11 6 7.7142 6.0023 -0.0671 12 6 6.7857 7.0131 -0.2616 13 6 7.2362 8.4452 -0.3928 14 9 6.1215 9.2693 -0.5812 15 9 7.9097 8.8307 0.7713 16 9 8.0956 8.5652 -1.4902 17 6 5.4394 6.6938 -0.3353 18 7 5.0337 5.4477 -0.2238 19 7 1.6524 2.0975 -1.2518 20 6 0.4156 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5380 22 6 0.0485 3.2945 -2.5547 23 7 -1.1405 3.8477 -2.6673 24 14 1.2415 3.3440 -3.9912 25 1 1.0379 2.1463 -4.8452 26 1 1.0001 4.5704 -4.7931 27 1 2.6347 3.3547 -3.4775 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9953 0.8310 -0.6660 34 1 3.8499 1.0377 1.0959 35 1 3.4411 3.5483 -0.1315 36 1 7.9534 3.8867 0.2005 37 1 8.7690 6.2258 -0.0058 38 1 4.7132 7.4788 -0.4863 39 1 2.2719 2.1231 -1.9978 40 1 -1.3969 4.2821 -3.4959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567970274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:45 Heat of formation + Delta-G solvation = -159.626953 kcal Electronic energy + Delta-G solvation = -28044.989561 eV Core-core repulsion = 23444.380099 eV Total energy + Delta-G solvation = -4600.609461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -51.27639 -48.79153 -48.73223 -41.93163 -40.29981 -38.41692 -35.46965 -34.51463 -34.02076 -33.14411 -32.07124 -29.92176 -27.89229 -25.53499 -25.16857 -24.43226 -23.55943 -21.86939 -21.60086 -19.98311 -19.64542 -19.59984 -19.54932 -18.85671 -17.92835 -17.15951 -16.70293 -16.41546 -16.24765 -15.93036 -15.67770 -15.60824 -15.41329 -15.16042 -15.00579 -14.93609 -14.87849 -14.84799 -14.68322 -14.49457 -14.37861 -14.33823 -14.00864 -13.10976 -13.07069 -12.91056 -12.88044 -12.32779 -12.13016 -11.91386 -11.60979 -11.56325 -11.41456 -11.39744 -10.97023 -10.82284 -10.69944 -10.12817 -9.28597 -7.94862 -5.26443 -0.93935 -0.09204 1.39264 1.39414 1.39838 1.42919 1.46598 1.96382 2.46633 2.49475 2.51790 2.81444 2.94018 3.27257 3.37389 3.46546 3.53919 3.62657 3.72220 3.86527 3.88400 4.31753 4.44717 4.47986 4.54099 4.56211 4.62262 4.73137 4.82238 5.07482 5.10860 5.13720 5.20258 5.36735 5.52888 5.74604 5.87905 6.22176 6.27867 6.52105 6.97942 7.13921 7.88573 8.06381 9.26287 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003319 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.295423 B = 8434.094183 C = 9863.550663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.167 3.833 4 H 0.058 0.942 5 C 0.115 3.885 6 N -0.696 5.696 7 C 0.561 3.439 8 O -0.557 6.557 9 C 0.092 3.908 10 C -0.109 4.109 11 C -0.014 4.014 12 C -0.221 4.221 13 C 0.525 3.475 14 F -0.174 7.174 15 F -0.171 7.171 16 F -0.173 7.173 17 C 0.145 3.855 18 N -0.475 5.475 19 N -0.747 5.747 20 C -0.204 4.204 21 H 0.070 0.930 22 C -0.057 4.057 23 N -0.982 5.982 24 Si 0.940 3.060 25 H -0.287 1.287 26 H -0.303 1.303 27 H -0.259 1.259 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.417 0.583 36 H 0.175 0.825 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.362 0.638 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.288 5.036 7.590 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.076 0.924 5 C -0.008 4.008 6 N -0.346 5.346 7 C 0.346 3.654 8 O -0.437 6.437 9 C -0.045 4.045 10 C -0.130 4.130 11 C -0.039 4.039 12 C -0.225 4.225 13 C 0.470 3.530 14 F -0.156 7.156 15 F -0.153 7.153 16 F -0.154 7.154 17 C -0.015 4.015 18 N -0.186 5.186 19 N -0.390 5.390 20 C -0.335 4.335 21 H 0.087 0.913 22 C -0.248 4.248 23 N -0.633 5.633 24 Si 0.770 3.230 25 H -0.214 1.214 26 H -0.231 1.231 27 H -0.184 1.184 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.254 0.746 36 H 0.193 0.807 37 H 0.207 0.793 38 H 0.205 0.795 39 H 0.195 0.805 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.712 4.223 7.739 22.511 hybrid contribution 0.535 1.060 -1.332 1.784 sum 21.247 5.283 6.407 22.813 Atomic orbital electron populations 1.21700 0.96448 1.00459 1.01573 1.21953 0.96072 0.96691 1.01958 1.20723 0.91126 0.93579 0.88706 0.92375 1.21804 0.93999 0.82082 1.02962 1.46000 1.07142 1.11477 1.69972 1.18069 0.82791 0.87231 0.77294 1.90756 1.56537 1.45071 1.51302 1.21504 0.92136 0.93001 0.97856 1.22310 0.94933 0.98725 0.97007 1.21769 1.01900 0.90209 0.90024 1.21359 0.97321 0.93642 1.10163 1.17843 0.75054 0.86016 0.74104 1.93205 1.52621 1.74717 1.95012 1.93247 1.80768 1.92359 1.48883 1.93247 1.71005 1.96575 1.54611 1.23047 0.93701 0.93565 0.91176 1.67790 1.39016 1.00465 1.11319 1.42819 1.15279 1.67698 1.13235 1.18961 0.91126 1.25069 0.98313 0.91253 1.25243 0.97817 1.01532 1.00255 1.69847 1.21574 1.44695 1.27212 0.85639 0.80217 0.76392 0.80793 1.21429 1.23076 1.18370 0.93967 0.93602 0.92688 0.92425 0.89947 0.91308 0.88898 0.74593 0.80718 0.79251 0.79451 0.80507 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.18 71.98 0.66 -4.26 16 2 C -0.13 -3.76 5.61 30.59 0.17 -3.59 16 3 C 0.17 5.53 2.59 44.99 0.12 5.64 16 4 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 5 C 0.12 3.32 5.23 86.38 0.45 3.77 16 6 N -0.70 -21.38 5.38 -465.66 -2.50 -23.88 16 7 C 0.56 16.70 7.81 86.88 0.68 17.38 16 8 O -0.56 -18.08 16.32 -3.76 -0.06 -18.14 16 9 C 0.09 2.35 6.75 41.91 0.28 2.63 16 10 C -0.11 -1.99 9.63 22.61 0.22 -1.77 16 11 C -0.01 -0.19 9.76 22.45 0.22 0.03 16 12 C -0.22 -3.68 5.39 -19.69 -0.11 -3.79 16 13 C 0.52 8.16 3.33 71.24 0.24 8.40 16 14 F -0.17 -3.00 16.00 44.97 0.72 -2.28 16 15 F -0.17 -2.63 17.24 44.97 0.78 -1.86 16 16 F -0.17 -2.78 17.24 44.97 0.78 -2.01 16 17 C 0.15 3.03 10.59 84.82 0.90 3.93 16 18 N -0.48 -12.54 9.54 -184.91 -1.76 -14.30 16 19 N -0.75 -31.35 4.31 -322.94 -1.39 -32.75 16 20 C -0.20 -10.58 8.23 84.03 0.69 -9.89 16 21 H 0.07 3.93 7.56 -2.91 -0.02 3.91 16 22 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 23 N -0.98 -60.88 13.97 21.65 0.30 -60.57 16 24 Si 0.94 44.89 27.74 68.60 1.90 46.79 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 27 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 28 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.04 1.95 5.99 -2.39 -0.01 1.94 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.42 13.90 7.47 -92.71 -0.69 13.21 16 36 H 0.18 2.67 7.64 -2.91 -0.02 2.65 16 37 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.19 3.34 7.16 -2.91 -0.02 3.32 16 39 H 0.36 15.31 5.66 -92.71 -0.52 14.78 16 40 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -66.45 352.86 3.58 -62.87 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.16 Total: 30.40 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 4.99 Total: 15.73 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -5.36 Total: -131.50 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.06 Total: -18.14 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 2.27 Total: -6.15 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Total: -66.45 3.58 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567970274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.754 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds