Wall clock time and date at job start Tue Mar 31 2020 15:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 116.99776 * 2 1 4 4 C 1.38725 * 119.96582 * 0.25424 * 3 2 1 5 5 C 1.38180 * 120.10685 * 180.25100 * 4 3 2 6 6 C 1.38705 * 120.03056 * 359.49325 * 5 4 3 7 7 N 1.40271 * 120.02940 * 180.22895 * 6 5 4 8 8 C 1.34774 * 120.00135 * 24.82464 * 7 6 5 9 9 O 1.21622 * 120.00292 * 5.53315 * 8 7 6 10 10 C 1.47418 * 120.00188 * 185.52784 * 8 7 6 11 11 C 1.41294 * 126.41412 * 359.68519 * 10 8 7 12 12 N 1.30443 * 108.02799 * 179.87877 * 11 10 8 13 13 N 1.39937 * 108.89980 * 0.38774 * 12 11 10 14 14 C 1.46503 * 125.75879 * 179.75386 * 13 12 11 15 15 C 1.50697 * 109.46690 * 269.99956 * 14 13 12 16 16 H 1.07996 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99782 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99881 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46829 * 60.00129 * 19 17 15 21 21 H 1.48499 * 109.47171 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47333 * 300.00198 * 19 17 15 23 23 C 1.34280 * 108.48891 * 359.74885 * 13 12 11 24 24 C 1.50696 * 126.29425 * 179.97438 * 23 13 12 25 25 C 1.39292 * 119.93358 * 0.25669 * 6 5 4 26 26 O 1.35974 * 120.05441 * 179.97438 * 25 6 5 27 27 C 1.38502 * 119.89289 * 359.97438 * 25 6 5 28 28 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46976 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.47105 * 59.99886 * 1 2 3 31 31 H 1.07998 * 119.94668 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.98351 * 179.76722 * 5 4 3 33 33 H 0.97004 * 120.00265 * 204.81945 * 7 6 5 34 34 H 1.08001 * 125.98673 * 0.04487 * 11 10 8 35 35 H 1.09001 * 109.47104 * 29.99666 * 14 13 12 36 36 H 1.08999 * 109.47024 * 149.99973 * 14 13 12 37 37 H 0.97007 * 119.99974 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47351 * 269.98023 * 24 23 13 39 39 H 1.08997 * 109.46816 * 29.97999 * 24 23 13 40 40 H 1.09003 * 109.46999 * 149.97851 * 24 23 13 41 41 H 0.96700 * 114.00391 * 89.99057 * 26 25 6 42 42 H 1.08002 * 120.02285 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2900 2.3745 0.0053 5 6 1.9142 3.6073 0.0001 6 6 3.2991 3.6841 0.0001 7 7 3.9328 4.9355 -0.0003 8 6 3.2921 6.0155 0.4893 9 8 2.2065 5.8886 1.0227 10 6 3.9072 7.3506 0.3784 11 6 5.1581 7.6519 -0.2054 12 7 5.3474 8.9392 -0.1124 13 7 4.2472 9.5136 0.5339 14 6 4.0788 10.9373 0.8355 15 6 4.6590 11.2350 2.1941 16 1 5.1078 10.4428 2.7750 17 6 4.6159 12.5185 2.6960 18 7 4.0688 13.4830 1.9888 19 14 5.3344 12.8873 4.3804 20 1 6.7802 12.5480 4.3869 21 1 5.1639 14.3305 4.6861 22 1 4.6311 12.0769 5.4069 23 6 3.3717 8.5398 0.8311 24 6 2.0482 8.7131 1.5306 25 6 4.0600 2.5173 0.0000 26 8 5.4178 2.5898 -0.0005 27 6 3.4312 1.2833 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2116 2.3163 0.0099 32 1 1.3235 4.5114 0.0005 33 1 4.8321 5.0237 -0.3529 34 1 5.8372 6.9413 -0.6530 35 1 4.5950 11.5319 0.0818 36 1 3.0177 11.1866 0.8310 37 1 4.0388 14.3861 2.3418 38 1 2.1907 8.6164 2.6069 39 1 1.6444 9.7000 1.3047 40 1 1.3523 7.9482 1.1860 41 1 5.8109 2.6110 0.8828 42 1 4.0191 0.3773 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001616512677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:55 Heat of formation + Delta-G solvation = -15.756786 kcal Electronic energy + Delta-G solvation = -27241.026250 eV Core-core repulsion = 23188.512207 eV Total energy + Delta-G solvation = -4052.514043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10947 -40.55692 -39.30662 -38.26796 -36.09027 -34.42206 -33.87787 -32.14509 -31.32910 -30.59232 -29.06916 -27.68912 -27.00397 -26.57290 -23.77989 -23.26997 -22.49428 -21.64447 -19.90041 -19.34326 -18.95394 -17.64962 -17.16477 -17.04590 -16.79383 -16.30378 -15.94978 -15.29198 -14.99672 -14.92589 -14.57403 -14.53673 -14.31537 -14.17092 -13.64946 -13.31978 -12.94238 -12.72027 -12.60493 -12.53296 -12.44784 -12.16657 -11.85774 -11.57083 -11.55427 -11.52879 -11.17674 -11.03419 -10.90668 -10.40396 -10.25873 -10.01288 -10.00370 -9.44316 -8.96638 -8.74362 -8.67441 -8.12149 -7.67437 -6.37320 -4.45542 0.98744 1.19514 2.08446 2.69680 2.94032 3.02999 3.17380 3.21727 3.25060 3.40463 3.43460 3.82112 4.09440 4.20967 4.62639 4.77752 4.85766 4.88319 4.94615 5.01856 5.11259 5.16872 5.19384 5.35240 5.43242 5.62255 5.66684 5.78122 5.82618 6.04726 6.10678 6.19484 6.26622 6.37679 6.47427 6.65477 6.72279 6.85383 7.07464 7.13431 7.41114 7.49955 7.53114 7.70830 7.72910 8.27563 8.37801 8.59275 9.21504 10.70829 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.002331 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.130289 B =12011.216343 C =12398.233439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.115 3.885 4 C -0.191 4.191 5 C -0.080 4.080 6 C 0.109 3.891 7 N -0.667 5.667 8 C 0.604 3.396 9 O -0.539 6.539 10 C -0.336 4.336 11 C 0.060 3.940 12 N -0.292 5.292 13 N -0.312 5.312 14 C 0.251 3.749 15 C -0.542 4.542 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.909 3.091 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.171 3.829 24 C -0.094 4.094 25 C 0.106 3.894 26 O -0.492 6.492 27 C -0.157 4.157 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.413 0.587 34 H 0.177 0.823 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.391 0.609 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 -22.535 -3.951 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.069 3.931 4 C -0.211 4.211 5 C -0.101 4.101 6 C 0.013 3.987 7 N -0.311 5.311 8 C 0.397 3.603 9 O -0.417 6.417 10 C -0.351 4.351 11 C -0.127 4.127 12 N -0.112 5.112 13 N -0.088 5.088 14 C 0.134 3.866 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.033 3.967 24 C -0.152 4.152 25 C 0.058 3.942 26 O -0.302 6.302 27 C -0.177 4.177 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.250 0.750 34 H 0.194 0.806 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.247 0.753 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.093 -21.339 -4.441 22.383 hybrid contribution 0.361 -0.157 1.371 1.427 sum -4.732 -21.496 -3.070 22.224 Atomic orbital electron populations 1.23052 0.78352 1.03810 1.01543 1.86050 1.21365 1.26800 1.89097 1.18706 0.91687 0.84265 0.98436 1.21201 1.00255 0.91606 1.08006 1.21233 0.92674 0.98851 0.97308 1.18051 0.92156 0.84569 1.03956 1.43262 1.19713 1.05662 1.62414 1.17428 0.84038 0.82902 0.75920 1.90651 1.21371 1.85772 1.43927 1.19521 1.00783 0.92520 1.22324 1.23766 0.95509 0.93947 0.99506 1.77172 1.08369 1.08542 1.17099 1.49425 1.11186 1.09655 1.38582 1.19883 0.99174 0.69332 0.98238 1.21190 1.40578 0.95162 1.01059 0.91706 1.24925 0.94760 0.95501 0.98446 1.69902 1.43156 1.01640 1.37927 0.86370 0.79805 0.77387 0.82904 1.19880 1.20842 1.19841 1.21485 0.93530 0.87705 0.94000 1.20591 0.90730 1.03497 1.00376 1.17678 0.82883 0.90126 1.03475 1.84819 1.15563 1.95979 1.33802 1.20303 0.91788 0.97623 1.07945 0.88343 0.92530 0.92589 0.85016 0.82581 0.75050 0.80580 0.92420 0.92484 0.92005 0.89684 0.90715 0.88810 0.75253 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.20 10.50 -19.65 -0.21 -3.40 16 3 C 0.11 1.26 6.68 -39.24 -0.26 1.00 16 4 C -0.19 -2.09 9.03 -39.42 -0.36 -2.44 16 5 C -0.08 -1.03 8.72 -39.43 -0.34 -1.38 16 6 C 0.11 1.38 6.45 -83.43 -0.54 0.84 16 7 N -0.67 -8.55 5.28 -10.68 -0.06 -8.60 16 8 C 0.60 9.58 7.62 -12.52 -0.10 9.48 16 9 O -0.54 -9.40 12.01 5.26 0.06 -9.34 16 10 C -0.34 -5.87 6.13 -105.07 -0.64 -6.52 16 11 C 0.06 1.01 11.51 -16.98 -0.20 0.82 16 12 N -0.29 -6.12 12.50 30.86 0.39 -5.73 16 13 N -0.31 -6.85 3.56 -57.77 -0.21 -7.06 16 14 C 0.25 6.10 5.97 -5.19 -0.03 6.07 16 15 C -0.54 -14.33 9.39 -34.44 -0.32 -14.65 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 19 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 C 0.17 3.34 7.01 -81.59 -0.57 2.76 16 24 C -0.09 -1.61 9.57 36.00 0.34 -1.27 16 25 C 0.11 1.18 6.72 -39.09 -0.26 0.92 16 26 O -0.49 -4.57 12.91 -19.66 -0.25 -4.82 16 27 C -0.16 -1.69 9.92 -39.32 -0.39 -2.08 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.13 1.14 6.28 -52.49 -0.33 0.81 16 32 H 0.16 2.20 5.78 -52.49 -0.30 1.90 16 33 H 0.41 4.45 7.31 -40.82 -0.30 4.15 16 34 H 0.18 2.13 7.51 -52.49 -0.39 1.74 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.06 1.37 7.02 -51.93 -0.36 1.01 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.26 7.05 -51.93 -0.37 0.89 16 40 H 0.09 1.51 6.50 -51.93 -0.34 1.17 16 41 H 0.39 2.09 9.06 45.56 0.41 2.51 16 42 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -31.62 361.31 -5.90 -37.52 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.01 Total: 7.58 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.77 Total: -3.59 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.86 Total: -44.90 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.40 Total: -17.56 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.62 -5.90 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616512677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.759 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds