Wall clock time and date at job start Tue Mar 31 2020 15:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 116.99776 * 2 1 4 4 C 1.38725 * 119.96582 * 0.25424 * 3 2 1 5 5 C 1.38180 * 120.10685 * 180.25100 * 4 3 2 6 6 C 1.38705 * 120.03056 * 359.49325 * 5 4 3 7 7 N 1.40271 * 120.02940 * 180.22895 * 6 5 4 8 8 C 1.34774 * 120.00135 * 24.82464 * 7 6 5 9 9 O 1.21622 * 120.00292 * 5.53315 * 8 7 6 10 10 C 1.47418 * 120.00188 * 185.52784 * 8 7 6 11 11 C 1.41294 * 126.41412 * 359.68519 * 10 8 7 12 12 N 1.30443 * 108.02799 * 179.87877 * 11 10 8 13 13 N 1.39937 * 108.89980 * 0.38774 * 12 11 10 14 14 C 1.46503 * 125.75879 * 179.75386 * 13 12 11 15 15 C 1.50697 * 109.46690 * 269.99956 * 14 13 12 16 16 H 1.07996 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99782 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99881 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46829 * 60.00129 * 19 17 15 21 21 H 1.48499 * 109.47171 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47333 * 300.00198 * 19 17 15 23 23 C 1.34280 * 108.48891 * 359.74885 * 13 12 11 24 24 C 1.50696 * 126.29425 * 179.97438 * 23 13 12 25 25 C 1.39292 * 119.93358 * 0.25669 * 6 5 4 26 26 O 1.35974 * 120.05441 * 179.97438 * 25 6 5 27 27 C 1.38502 * 119.89289 * 359.97438 * 25 6 5 28 28 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46976 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.47105 * 59.99886 * 1 2 3 31 31 H 1.07998 * 119.94668 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.98351 * 179.76722 * 5 4 3 33 33 H 0.97004 * 120.00265 * 204.81945 * 7 6 5 34 34 H 1.08001 * 125.98673 * 0.04487 * 11 10 8 35 35 H 1.09001 * 109.47104 * 29.99666 * 14 13 12 36 36 H 1.08999 * 109.47024 * 149.99973 * 14 13 12 37 37 H 0.97007 * 119.99974 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47351 * 269.98023 * 24 23 13 39 39 H 1.08997 * 109.46816 * 29.97999 * 24 23 13 40 40 H 1.09003 * 109.46999 * 149.97851 * 24 23 13 41 41 H 0.96700 * 114.00391 * 89.99057 * 26 25 6 42 42 H 1.08002 * 120.02285 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2900 2.3745 0.0053 5 6 1.9142 3.6073 0.0001 6 6 3.2991 3.6841 0.0001 7 7 3.9328 4.9355 -0.0003 8 6 3.2921 6.0155 0.4893 9 8 2.2065 5.8886 1.0227 10 6 3.9072 7.3506 0.3784 11 6 5.1581 7.6519 -0.2054 12 7 5.3474 8.9392 -0.1124 13 7 4.2472 9.5136 0.5339 14 6 4.0788 10.9373 0.8355 15 6 4.6590 11.2350 2.1941 16 1 5.1078 10.4428 2.7750 17 6 4.6159 12.5185 2.6960 18 7 4.0688 13.4830 1.9888 19 14 5.3344 12.8873 4.3804 20 1 6.7802 12.5480 4.3869 21 1 5.1639 14.3305 4.6861 22 1 4.6311 12.0769 5.4069 23 6 3.3717 8.5398 0.8311 24 6 2.0482 8.7131 1.5306 25 6 4.0600 2.5173 0.0000 26 8 5.4178 2.5898 -0.0005 27 6 3.4312 1.2833 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2116 2.3163 0.0099 32 1 1.3235 4.5114 0.0005 33 1 4.8321 5.0237 -0.3529 34 1 5.8372 6.9413 -0.6530 35 1 4.5950 11.5319 0.0818 36 1 3.0177 11.1866 0.8310 37 1 4.0388 14.3861 2.3418 38 1 2.1907 8.6164 2.6069 39 1 1.6444 9.7000 1.3047 40 1 1.3523 7.9482 1.1860 41 1 5.8109 2.6110 0.8828 42 1 4.0191 0.3773 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616512677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:54 Heat of formation + Delta-G solvation = -38.364255 kcal Electronic energy + Delta-G solvation = -27242.006583 eV Core-core repulsion = 23188.512207 eV Total energy + Delta-G solvation = -4053.494376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44745 -41.58990 -40.28816 -39.16914 -36.92614 -35.86651 -35.38273 -33.82116 -32.82029 -31.46742 -30.14530 -28.96553 -28.28506 -27.68718 -25.44776 -24.43955 -23.54860 -22.71817 -21.22541 -20.67004 -19.84117 -18.87768 -18.75413 -18.15153 -17.87873 -17.30294 -16.80822 -16.58738 -16.46872 -16.11707 -15.73959 -15.67914 -15.52344 -15.27384 -14.92533 -14.52692 -14.31629 -14.09107 -13.74288 -13.69558 -13.58745 -13.42212 -13.15752 -13.10310 -12.97301 -12.69430 -12.35420 -12.30823 -12.25468 -11.89201 -11.88661 -11.67260 -11.01849 -10.76280 -10.62739 -10.29656 -9.81573 -9.58919 -8.62204 -8.38144 -6.54626 0.12064 0.26570 0.72062 1.29464 1.38317 1.39099 1.47215 1.60088 2.14243 2.30595 2.32324 2.37968 2.72469 2.94097 3.32431 3.65115 3.70929 3.84465 4.01707 4.06976 4.19789 4.27489 4.37917 4.44482 4.49371 4.52715 4.62199 4.72232 4.78178 4.79922 4.88409 4.99583 5.07156 5.14593 5.24205 5.34921 5.38582 5.48402 5.61919 5.72178 5.74018 6.01476 6.40855 6.47111 6.53765 6.76552 6.80648 7.16308 7.19082 8.69387 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.002331 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.130289 B =12011.216343 C =12398.233439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.117 3.883 4 C -0.193 4.193 5 C -0.093 4.093 6 C 0.084 3.916 7 N -0.650 5.650 8 C 0.607 3.393 9 O -0.557 6.557 10 C -0.331 4.331 11 C 0.081 3.919 12 N -0.334 5.334 13 N -0.337 5.337 14 C 0.267 3.733 15 C -0.556 4.556 16 H 0.052 0.948 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.266 1.266 23 C 0.152 3.848 24 C -0.088 4.088 25 C 0.119 3.881 26 O -0.494 6.494 27 C -0.164 4.164 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.423 0.577 34 H 0.225 0.775 35 H 0.032 0.968 36 H 0.052 0.948 37 H 0.274 0.726 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.411 0.589 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -25.016 -3.535 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.071 3.929 4 C -0.213 4.213 5 C -0.114 4.114 6 C -0.012 4.012 7 N -0.295 5.295 8 C 0.399 3.601 9 O -0.437 6.437 10 C -0.347 4.347 11 C -0.106 4.106 12 N -0.154 5.154 13 N -0.113 5.113 14 C 0.148 3.852 15 C -0.594 4.594 16 H 0.071 0.929 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.191 1.191 23 C 0.016 3.984 24 C -0.145 4.145 25 C 0.071 3.929 26 O -0.306 6.306 27 C -0.183 4.183 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.262 0.738 34 H 0.242 0.758 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.270 0.730 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.758 -23.866 -4.031 24.667 hybrid contribution 0.225 0.378 1.172 1.252 sum -4.532 -23.487 -2.859 24.091 Atomic orbital electron populations 1.23355 0.76451 1.05639 1.02251 1.86047 1.23372 1.26246 1.88775 1.18848 0.91980 0.84641 0.97442 1.21343 1.01309 0.90959 1.07646 1.21181 0.92917 0.98995 0.98281 1.18190 0.92385 0.84656 1.05927 1.42982 1.19862 1.05111 1.61510 1.17179 0.83843 0.82938 0.76171 1.90649 1.22164 1.86012 1.44888 1.19755 1.00841 0.92793 1.21274 1.24515 0.95514 0.93208 0.97401 1.77123 1.08934 1.10496 1.18804 1.49141 1.12508 1.09053 1.40640 1.19390 0.98189 0.71011 0.96601 1.21351 1.40872 0.95203 1.01947 0.92928 1.25728 0.94905 0.95215 1.01933 1.69988 1.43898 1.02035 1.39481 0.85410 0.78861 0.77623 0.78666 1.19849 1.19846 1.19106 1.21974 0.94003 0.88076 0.94353 1.20586 0.90123 1.03711 1.00126 1.17629 0.83503 0.89601 1.02156 1.84772 1.14498 1.95856 1.35522 1.20531 0.92071 0.98021 1.07724 0.86090 0.91909 0.91766 0.83194 0.84240 0.73816 0.75831 0.95029 0.93003 0.91652 0.89739 0.90975 0.87696 0.73003 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -5.86 10.50 -93.24 -0.98 -6.84 16 3 C 0.12 2.33 6.68 22.49 0.15 2.48 16 4 C -0.19 -3.93 9.03 22.37 0.20 -3.72 16 5 C -0.09 -2.31 8.72 22.37 0.19 -2.12 16 6 C 0.08 1.99 6.45 38.16 0.25 2.24 16 7 N -0.65 -15.49 5.28 -305.95 -1.62 -17.11 16 8 C 0.61 18.59 7.62 86.66 0.66 19.25 16 9 O -0.56 -19.19 12.01 -4.10 -0.05 -19.23 16 10 C -0.33 -11.32 6.13 -20.15 -0.12 -11.45 16 11 C 0.08 2.60 11.51 85.65 0.99 3.58 16 12 N -0.33 -14.05 12.50 -56.27 -0.70 -14.76 16 13 N -0.34 -15.18 3.56 -336.68 -1.20 -16.38 16 14 C 0.27 13.54 5.97 85.63 0.51 14.05 16 15 C -0.56 -30.15 9.39 25.60 0.24 -29.91 16 16 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 17 C 0.02 1.27 5.46 84.66 0.46 1.73 16 18 N -0.92 -50.76 13.29 21.45 0.28 -50.47 16 19 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C 0.15 6.02 7.01 42.14 0.30 6.32 16 24 C -0.09 -3.06 9.57 71.23 0.68 -2.38 16 25 C 0.12 2.37 6.72 22.59 0.15 2.53 16 26 O -0.49 -7.75 12.91 -93.25 -1.20 -8.95 16 27 C -0.16 -3.17 9.92 22.44 0.22 -2.94 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.57 7.65 -2.39 -0.02 0.55 16 30 H 0.06 0.55 7.67 -2.39 -0.02 0.53 16 31 H 0.15 2.34 6.28 -2.91 -0.02 2.32 16 32 H 0.14 3.92 5.78 -2.91 -0.02 3.91 16 33 H 0.42 7.98 7.31 -92.70 -0.68 7.31 16 34 H 0.23 4.67 7.51 -2.91 -0.02 4.64 16 35 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.63 7.02 -2.39 -0.02 2.61 16 37 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 38 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.07 2.51 7.05 -2.39 -0.02 2.50 16 40 H 0.10 3.39 6.50 -2.39 -0.02 3.38 16 41 H 0.41 3.13 9.06 -74.06 -0.67 2.46 16 42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -68.92 361.31 2.31 -66.61 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.25 Total: 22.04 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.99 Total: 0.94 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.23 Total: -98.71 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -2.23 Total: -35.03 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.92 2.31 -66.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616512677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.246 kcal (2) G-P(sol) polarization free energy of solvation -68.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds