Wall clock time and date at job start Tue Mar 31 2020 15:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35975 * 117.00025 * 2 1 4 4 C 1.38716 * 119.97139 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.12346 * 180.02562 * 4 3 2 6 6 C 1.38506 * 120.06538 * 0.02562 * 5 4 3 7 7 O 1.36060 * 120.02771 * 179.97438 * 6 5 4 8 8 C 1.39290 * 119.94947 * 359.97438 * 6 5 4 9 9 N 1.40064 * 120.06423 * 180.02562 * 8 6 5 10 10 C 1.34775 * 119.99795 * 214.94153 * 9 8 6 11 11 O 1.21610 * 120.00374 * 355.53021 * 10 9 8 12 12 C 1.47422 * 119.99637 * 175.52957 * 10 9 8 13 13 C 1.41289 * 126.41660 * 0.02562 * 12 10 9 14 14 N 1.30444 * 108.02546 * 179.69496 * 13 12 10 15 15 N 1.39939 * 108.89867 * 0.44301 * 14 13 12 16 16 C 1.46497 * 125.75333 * 179.81040 * 15 14 13 17 17 C 1.50704 * 109.46989 * 269.69091 * 16 15 14 18 18 H 1.07997 * 120.00157 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99909 * 179.72516 * 17 16 15 20 20 N 1.31514 * 119.99945 * 180.27282 * 19 17 16 21 21 Si 1.86807 * 119.99933 * 0.27804 * 19 17 16 22 22 H 1.48502 * 109.47006 * 89.99965 * 21 19 17 23 23 H 1.48497 * 109.46888 * 209.99832 * 21 19 17 24 24 H 1.48497 * 109.47021 * 329.99997 * 21 19 17 25 25 C 1.34270 * 108.49176 * 359.54719 * 15 14 13 26 26 C 1.50691 * 126.29528 * 180.26604 * 25 15 14 27 27 C 1.38621 * 119.97069 * 180.29864 * 3 2 1 28 28 H 1.08997 * 109.46352 * 299.99984 * 1 2 3 29 29 H 1.08997 * 109.46936 * 60.00086 * 1 2 3 30 30 H 1.08991 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.94417 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.96632 * 179.97438 * 5 4 3 33 33 H 0.96698 * 113.99789 * 270.01868 * 7 6 5 34 34 H 0.96996 * 120.00341 * 34.93540 * 9 8 6 35 35 H 1.08008 * 125.98862 * 359.97438 * 13 12 10 36 36 H 1.09002 * 109.46954 * 149.69372 * 16 15 14 37 37 H 1.09002 * 109.47519 * 29.69122 * 16 15 14 38 38 H 0.97002 * 119.99617 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.47502 * 89.99475 * 26 25 15 40 40 H 1.09004 * 109.46991 * 210.00184 * 26 25 15 41 41 H 1.09006 * 109.47192 * 329.99465 * 26 25 15 42 42 H 1.07998 * 120.04061 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2903 2.3745 0.0005 5 6 1.9147 3.6080 0.0000 6 6 3.2976 3.6857 -0.0016 7 8 3.9113 4.9001 -0.0027 8 6 4.0596 2.5198 -0.0021 9 7 5.4582 2.5956 -0.0032 10 6 6.1823 1.6766 -0.6723 11 8 5.6267 0.7361 -1.2068 12 6 7.6479 1.8116 -0.7561 13 6 8.4290 2.8433 -0.1889 14 7 9.6794 2.6074 -0.4763 15 7 9.7562 1.4364 -1.2385 16 6 10.9849 0.8355 -1.7632 17 6 11.2685 1.3893 -3.1358 18 1 10.6005 2.1164 -3.5733 19 6 12.3842 0.9723 -3.8304 20 7 12.6346 1.4596 -5.0260 21 14 13.5400 -0.2849 -3.0733 22 1 13.0999 -1.6521 -3.4506 23 1 14.9191 -0.0533 -3.5729 24 1 13.5196 -0.1487 -1.5948 25 6 8.5143 0.9531 -1.4030 26 6 8.1357 -0.2965 -2.1553 27 6 3.4307 1.2834 -0.0063 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2119 2.3164 0.0005 32 1 1.3236 4.5118 0.0000 33 1 4.0874 5.2509 -0.8864 34 1 5.9056 3.3094 0.4774 35 1 8.0566 3.6784 0.3860 36 1 10.8626 -0.2458 -1.8258 37 1 11.8164 1.0692 -1.0982 38 1 13.4197 1.1665 -5.5145 39 1 8.1441 -1.1474 -1.4741 40 1 7.1375 -0.1784 -2.5770 41 1 8.8518 -0.4676 -2.9592 42 1 4.0191 0.3778 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624287662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:58 Heat of formation + Delta-G solvation = -10.854243 kcal Electronic energy + Delta-G solvation = -27408.094496 eV Core-core repulsion = 23355.793044 eV Total energy + Delta-G solvation = -4052.301452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14922 -40.58104 -39.25551 -38.28169 -35.95541 -34.55167 -33.90709 -32.23000 -31.47287 -30.55386 -29.12792 -27.73252 -27.28893 -26.75658 -23.76718 -23.02264 -22.43829 -21.63685 -19.94083 -19.34215 -18.56763 -18.24616 -17.37740 -17.25119 -16.44405 -16.16199 -15.96773 -15.52375 -15.19215 -15.07497 -14.57282 -14.34194 -14.14188 -14.01300 -13.64212 -13.43680 -12.95635 -12.80343 -12.65768 -12.62735 -12.57394 -12.31530 -12.16510 -11.68309 -11.62293 -11.35560 -11.25420 -10.91197 -10.87544 -10.44665 -10.34649 -10.18405 -9.83477 -9.50377 -8.88346 -8.72783 -8.55287 -8.17297 -7.95363 -6.36171 -4.41455 1.01897 1.16234 2.02246 2.63029 2.81557 3.05753 3.10394 3.16140 3.20178 3.38069 3.41034 3.76490 4.11280 4.12889 4.57841 4.80032 4.84575 4.86821 4.88430 4.98532 5.08893 5.11571 5.20341 5.33281 5.35563 5.58860 5.69018 5.79859 5.85292 5.96814 6.01817 6.17063 6.20556 6.24045 6.40311 6.45043 6.53436 6.67026 6.93008 7.14259 7.16354 7.45763 7.50138 7.50487 8.15589 8.19027 8.34904 8.66782 9.17441 10.75925 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.002527 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.031718 B =11078.722962 C =11807.106164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.138 3.862 4 C -0.216 4.216 5 C -0.086 4.086 6 C 0.036 3.964 7 O -0.493 6.493 8 C 0.178 3.822 9 N -0.669 5.669 10 C 0.604 3.396 11 O -0.532 6.532 12 C -0.332 4.332 13 C 0.064 3.936 14 N -0.289 5.289 15 N -0.312 5.312 16 C 0.224 3.776 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.082 3.918 20 N -0.882 5.882 21 Si 0.872 3.128 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.175 3.825 26 C -0.102 4.102 27 C -0.144 4.144 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.386 0.614 34 H 0.415 0.585 35 H 0.180 0.820 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.271 0.729 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.133 0.821 10.818 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.092 3.908 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.011 4.011 7 O -0.302 6.302 8 C 0.081 3.919 9 N -0.314 5.314 10 C 0.396 3.604 11 O -0.409 6.409 12 C -0.347 4.347 13 C -0.124 4.124 14 N -0.109 5.109 15 N -0.088 5.088 16 C 0.105 3.895 17 C -0.585 4.585 18 H 0.100 0.900 19 C -0.123 4.123 20 N -0.518 5.518 21 Si 0.698 3.302 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.188 1.188 25 C 0.038 3.962 26 C -0.160 4.160 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.241 0.759 34 H 0.252 0.748 35 H 0.197 0.803 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.835 0.251 10.934 23.531 hybrid contribution -0.062 -0.043 -0.169 0.185 sum -20.897 0.208 10.765 23.508 Atomic orbital electron populations 1.23060 0.78475 1.03945 1.01279 1.86124 1.21223 1.26707 1.88588 1.18792 0.91806 0.84191 0.96009 1.21051 1.00028 0.91709 1.10739 1.20933 0.93004 0.97769 0.98836 1.18042 0.90127 0.83903 1.09025 1.84863 1.80033 1.31739 1.33593 1.17720 0.83266 0.92480 0.98418 1.43265 1.03530 1.31897 1.52727 1.17441 0.85788 0.80824 0.76335 1.90715 1.72136 1.31406 1.46636 1.19505 0.92390 1.03629 1.19211 1.23792 0.90670 0.98373 0.99571 1.77172 1.19659 1.01071 1.12965 1.48949 1.06858 1.16959 1.36038 1.20185 0.79519 0.93381 0.96386 1.21086 1.11522 1.27651 0.98278 0.89996 1.24795 0.96890 0.96048 0.94594 1.69862 1.27630 1.42546 1.11759 0.86905 0.81084 0.82000 0.80200 1.19456 1.20333 1.18766 1.21477 0.84883 0.95798 0.94051 1.20680 1.04252 0.91495 0.99583 1.20448 0.91563 0.98386 1.06080 0.92677 0.92617 0.88256 0.85185 0.84906 0.75876 0.74773 0.80348 0.93319 0.92601 0.91922 0.90272 0.88300 0.89642 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.57 10.50 -19.66 -0.21 -3.78 16 3 C 0.14 1.66 6.68 -39.26 -0.26 1.39 16 4 C -0.22 -2.08 9.03 -39.40 -0.36 -2.44 16 5 C -0.09 -0.83 9.97 -39.48 -0.39 -1.22 16 6 C 0.04 0.40 6.72 -39.09 -0.26 0.14 16 7 O -0.49 -4.72 13.06 -19.93 -0.26 -4.98 16 8 C 0.18 2.30 6.32 -83.53 -0.53 1.77 16 9 N -0.67 -8.65 5.17 -10.73 -0.06 -8.71 16 10 C 0.60 9.69 7.66 -12.52 -0.10 9.60 16 11 O -0.53 -9.61 12.26 5.27 0.06 -9.55 16 12 C -0.33 -5.78 6.13 -105.07 -0.64 -6.42 16 13 C 0.06 1.05 11.50 -16.98 -0.20 0.86 16 14 N -0.29 -5.96 12.50 30.86 0.39 -5.57 16 15 N -0.31 -6.71 3.56 -57.77 -0.21 -6.92 16 16 C 0.22 5.11 4.85 -5.19 -0.03 5.08 16 17 C -0.55 -14.75 9.94 -34.44 -0.34 -15.09 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 20 N -0.88 -25.55 13.96 55.43 0.77 -24.77 16 21 Si 0.87 19.50 27.47 -169.99 -4.67 14.83 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 25 C 0.18 3.39 7.01 -81.60 -0.57 2.82 16 26 C -0.10 -1.74 9.34 36.00 0.34 -1.40 16 27 C -0.14 -1.99 8.63 -39.26 -0.34 -2.33 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.90 6.28 -52.49 -0.33 0.57 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.39 2.36 9.06 45.56 0.41 2.78 16 34 H 0.42 4.44 7.53 -40.82 -0.31 4.13 16 35 H 0.18 2.10 7.51 -52.48 -0.39 1.71 16 36 H 0.05 1.02 7.06 -51.93 -0.37 0.65 16 37 H 0.06 1.28 7.19 -51.93 -0.37 0.91 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 1.68 6.50 -51.93 -0.34 1.34 16 41 H 0.08 1.52 7.70 -51.93 -0.40 1.12 16 42 H 0.16 2.42 6.19 -52.49 -0.33 2.10 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -33.38 359.35 -5.62 -38.99 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.07 Total: 8.99 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.79 Total: -3.96 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.90 Total: -45.97 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.40 Total: -18.30 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.67 Total: 14.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.38 -5.62 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624287662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.140 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds