Wall clock time and date at job start Tue Mar 31 2020 15:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35975 * 117.00025 * 2 1 4 4 C 1.38716 * 119.97139 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.12346 * 180.02562 * 4 3 2 6 6 C 1.38506 * 120.06538 * 0.02562 * 5 4 3 7 7 O 1.36060 * 120.02771 * 179.97438 * 6 5 4 8 8 C 1.39290 * 119.94947 * 359.97438 * 6 5 4 9 9 N 1.40064 * 120.06423 * 180.02562 * 8 6 5 10 10 C 1.34775 * 119.99795 * 214.94153 * 9 8 6 11 11 O 1.21610 * 120.00374 * 355.53021 * 10 9 8 12 12 C 1.47422 * 119.99637 * 175.52957 * 10 9 8 13 13 C 1.41289 * 126.41660 * 0.02562 * 12 10 9 14 14 N 1.30444 * 108.02546 * 179.69496 * 13 12 10 15 15 N 1.39939 * 108.89867 * 0.44301 * 14 13 12 16 16 C 1.46497 * 125.75333 * 179.81040 * 15 14 13 17 17 C 1.50704 * 109.46989 * 269.69091 * 16 15 14 18 18 H 1.07997 * 120.00157 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99909 * 179.72516 * 17 16 15 20 20 N 1.31514 * 119.99945 * 180.27282 * 19 17 16 21 21 Si 1.86807 * 119.99933 * 0.27804 * 19 17 16 22 22 H 1.48502 * 109.47006 * 89.99965 * 21 19 17 23 23 H 1.48497 * 109.46888 * 209.99832 * 21 19 17 24 24 H 1.48497 * 109.47021 * 329.99997 * 21 19 17 25 25 C 1.34270 * 108.49176 * 359.54719 * 15 14 13 26 26 C 1.50691 * 126.29528 * 180.26604 * 25 15 14 27 27 C 1.38621 * 119.97069 * 180.29864 * 3 2 1 28 28 H 1.08997 * 109.46352 * 299.99984 * 1 2 3 29 29 H 1.08997 * 109.46936 * 60.00086 * 1 2 3 30 30 H 1.08991 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.94417 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.96632 * 179.97438 * 5 4 3 33 33 H 0.96698 * 113.99789 * 270.01868 * 7 6 5 34 34 H 0.96996 * 120.00341 * 34.93540 * 9 8 6 35 35 H 1.08008 * 125.98862 * 359.97438 * 13 12 10 36 36 H 1.09002 * 109.46954 * 149.69372 * 16 15 14 37 37 H 1.09002 * 109.47519 * 29.69122 * 16 15 14 38 38 H 0.97002 * 119.99617 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.47502 * 89.99475 * 26 25 15 40 40 H 1.09004 * 109.46991 * 210.00184 * 26 25 15 41 41 H 1.09006 * 109.47192 * 329.99465 * 26 25 15 42 42 H 1.07998 * 120.04061 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2903 2.3745 0.0005 5 6 1.9147 3.6080 0.0000 6 6 3.2976 3.6857 -0.0016 7 8 3.9113 4.9001 -0.0027 8 6 4.0596 2.5198 -0.0021 9 7 5.4582 2.5956 -0.0032 10 6 6.1823 1.6766 -0.6723 11 8 5.6267 0.7361 -1.2068 12 6 7.6479 1.8116 -0.7561 13 6 8.4290 2.8433 -0.1889 14 7 9.6794 2.6074 -0.4763 15 7 9.7562 1.4364 -1.2385 16 6 10.9849 0.8355 -1.7632 17 6 11.2685 1.3893 -3.1358 18 1 10.6005 2.1164 -3.5733 19 6 12.3842 0.9723 -3.8304 20 7 12.6346 1.4596 -5.0260 21 14 13.5400 -0.2849 -3.0733 22 1 13.0999 -1.6521 -3.4506 23 1 14.9191 -0.0533 -3.5729 24 1 13.5196 -0.1487 -1.5948 25 6 8.5143 0.9531 -1.4030 26 6 8.1357 -0.2965 -2.1553 27 6 3.4307 1.2834 -0.0063 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2119 2.3164 0.0005 32 1 1.3236 4.5118 0.0000 33 1 4.0874 5.2509 -0.8864 34 1 5.9056 3.3094 0.4774 35 1 8.0566 3.6784 0.3860 36 1 10.8626 -0.2458 -1.8258 37 1 11.8164 1.0692 -1.0982 38 1 13.4197 1.1665 -5.5145 39 1 8.1441 -1.1474 -1.4741 40 1 7.1375 -0.1784 -2.5770 41 1 8.8518 -0.4676 -2.9592 42 1 4.0191 0.3778 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624287662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:57 Heat of formation + Delta-G solvation = -36.626610 kcal Electronic energy + Delta-G solvation = -27409.212070 eV Core-core repulsion = 23355.793044 eV Total energy + Delta-G solvation = -4053.419026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49275 -41.59843 -40.25821 -39.19926 -36.78570 -35.86347 -35.50191 -33.98985 -32.94403 -31.49857 -30.21227 -29.26205 -28.17638 -27.86797 -25.20543 -24.39943 -23.51650 -22.69316 -21.23986 -20.69949 -19.55401 -19.29415 -19.04105 -18.59072 -17.41955 -17.11208 -16.85948 -16.63212 -16.52693 -16.21034 -16.04837 -15.57580 -15.50616 -15.06102 -14.86996 -14.60755 -14.46926 -14.16304 -13.82226 -13.73093 -13.68357 -13.41145 -13.36517 -13.17065 -13.01279 -12.58729 -12.31762 -12.18285 -12.13094 -11.86224 -11.85232 -11.63156 -11.18067 -10.92781 -10.74003 -10.30647 -9.69006 -9.38811 -8.87887 -8.44090 -6.56395 0.09562 0.32554 0.64998 1.24663 1.33613 1.34576 1.44428 1.55342 2.02900 2.23892 2.33141 2.48282 2.66997 2.88261 3.33726 3.63678 3.66919 3.84962 4.00054 4.09443 4.12054 4.25490 4.41710 4.44120 4.45359 4.47453 4.53321 4.63515 4.70121 4.73900 4.80364 5.03615 5.05685 5.08595 5.16353 5.24971 5.30990 5.36765 5.56005 5.72288 5.79865 6.17660 6.40676 6.43573 6.46784 6.73352 6.83475 7.07616 7.15448 8.72278 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.002527 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.031718 B =11078.722962 C =11807.106164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.127 3.873 4 C -0.203 4.203 5 C -0.081 4.081 6 C 0.040 3.960 7 O -0.496 6.496 8 C 0.154 3.846 9 N -0.654 5.654 10 C 0.606 3.394 11 O -0.556 6.556 12 C -0.331 4.331 13 C 0.084 3.916 14 N -0.330 5.330 15 N -0.336 5.336 16 C 0.233 3.767 17 C -0.554 4.554 18 H 0.027 0.973 19 C 0.024 3.976 20 N -0.934 5.934 21 Si 0.948 3.052 22 H -0.252 1.252 23 H -0.278 1.278 24 H -0.242 1.242 25 C 0.156 3.844 26 C -0.096 4.096 27 C -0.169 4.169 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.403 0.597 34 H 0.426 0.574 35 H 0.227 0.773 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.275 0.725 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.095 1.030 12.758 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.081 3.919 4 C -0.222 4.222 5 C -0.100 4.100 6 C -0.007 4.007 7 O -0.307 6.307 8 C 0.059 3.941 9 N -0.299 5.299 10 C 0.397 3.603 11 O -0.435 6.435 12 C -0.346 4.346 13 C -0.104 4.104 14 N -0.149 5.149 15 N -0.113 5.113 16 C 0.113 3.887 17 C -0.592 4.592 18 H 0.045 0.955 19 C -0.177 4.177 20 N -0.572 5.572 21 Si 0.769 3.231 22 H -0.176 1.176 23 H -0.203 1.203 24 H -0.165 1.165 25 C 0.020 3.980 26 C -0.153 4.153 27 C -0.190 4.190 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.180 0.820 32 H 0.182 0.818 33 H 0.260 0.740 34 H 0.265 0.735 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.846 0.492 12.895 26.239 hybrid contribution 0.283 0.016 -0.777 0.828 sum -22.562 0.508 12.118 25.616 Atomic orbital electron populations 1.23389 0.76070 1.05589 1.02646 1.86094 1.23808 1.26861 1.88581 1.18908 0.91416 0.85339 0.96273 1.21393 1.01492 0.90732 1.08627 1.21304 0.92525 0.98907 0.97287 1.18121 0.90677 0.83638 1.08272 1.84823 1.79961 1.30847 1.35094 1.17887 0.82929 0.93117 1.00196 1.42990 1.03813 1.31211 1.51874 1.17268 0.85285 0.81136 0.76581 1.90712 1.72391 1.32566 1.47842 1.19741 0.93120 1.03295 1.18450 1.24527 0.89208 0.98641 0.98000 1.77115 1.21835 1.01489 1.14446 1.48795 1.06897 1.17969 1.37625 1.19927 0.80629 0.94351 0.93767 1.21182 1.10846 1.26714 1.00460 0.95486 1.25814 0.98691 0.98341 0.94817 1.70023 1.28739 1.44715 1.13749 0.85712 0.77912 0.79198 0.80256 1.17635 1.20281 1.16549 1.21970 0.84733 0.96803 0.94500 1.20668 1.03512 0.91670 0.99498 1.20361 0.92678 0.97818 1.08172 0.91009 0.91364 0.86728 0.82028 0.81845 0.73960 0.73491 0.75671 0.91045 0.92430 0.91624 0.88010 0.88561 0.90829 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.51 10.50 -93.27 -0.98 -8.49 16 3 C 0.13 2.92 6.68 22.48 0.15 3.07 16 4 C -0.20 -3.33 9.03 22.39 0.20 -3.13 16 5 C -0.08 -1.29 9.97 22.34 0.22 -1.06 16 6 C 0.04 0.79 6.72 22.59 0.15 0.95 16 7 O -0.50 -8.07 13.06 -94.23 -1.23 -9.30 16 8 C 0.15 3.87 6.32 38.19 0.24 4.11 16 9 N -0.65 -16.33 5.17 -306.11 -1.58 -17.92 16 10 C 0.61 19.44 7.66 86.66 0.66 20.10 16 11 O -0.56 -20.61 12.26 -4.06 -0.05 -20.66 16 12 C -0.33 -11.46 6.13 -20.15 -0.12 -11.58 16 13 C 0.08 2.68 11.50 85.65 0.99 3.67 16 14 N -0.33 -13.58 12.50 -56.27 -0.70 -14.28 16 15 N -0.34 -14.68 3.56 -336.69 -1.20 -15.88 16 16 C 0.23 10.70 4.85 85.63 0.42 11.11 16 17 C -0.55 -31.02 9.94 25.60 0.25 -30.77 16 18 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 19 C 0.02 1.31 5.47 84.66 0.46 1.77 16 20 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 21 Si 0.95 40.06 27.47 68.60 1.88 41.94 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 25 C 0.16 6.12 7.01 42.14 0.30 6.42 16 26 C -0.10 -3.32 9.34 71.23 0.67 -2.66 16 27 C -0.17 -4.73 8.63 22.47 0.19 -4.54 16 28 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.16 1.55 6.28 -2.91 -0.02 1.54 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.40 3.78 9.06 -74.06 -0.67 3.11 16 34 H 0.43 8.33 7.53 -92.71 -0.70 7.63 16 35 H 0.23 4.66 7.51 -2.91 -0.02 4.64 16 36 H 0.07 2.93 7.06 -2.39 -0.02 2.91 16 37 H 0.06 2.61 7.19 -2.39 -0.02 2.59 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.10 3.38 6.50 -2.38 -0.02 3.37 16 41 H 0.07 2.70 7.70 -2.38 -0.02 2.68 16 42 H 0.13 4.19 6.19 -2.91 -0.02 4.17 16 Total: -1.00 -77.23 359.35 2.01 -75.22 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.32 Total: 26.40 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.89 Total: -1.24 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -3.19 Total: -103.89 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -2.26 Total: -38.44 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.88 Total: 41.94 kcal Total: -77.23 2.01 -75.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624287662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.595 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds