Wall clock time and date at job start Tue Mar 31 2020 15:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35989 * 117.00320 * 2 1 4 4 C 1.38501 * 120.03107 * 359.97438 * 3 2 1 5 5 C 1.38831 * 119.92791 * 179.97438 * 4 3 2 6 6 N 1.40049 * 119.99678 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99670 * 146.65802 * 6 5 4 8 8 O 1.21621 * 120.00348 * 354.91258 * 7 6 5 9 9 C 1.47412 * 119.99937 * 174.90289 * 7 6 5 10 10 C 1.41296 * 126.41465 * 359.69847 * 9 7 6 11 11 N 1.30451 * 108.02510 * 179.87381 * 10 9 7 12 12 N 1.39935 * 108.89745 * 0.38407 * 11 10 9 13 13 C 1.46496 * 125.75092 * 179.77601 * 12 11 10 14 14 C 1.50699 * 109.47028 * 269.97285 * 13 12 11 15 15 H 1.07997 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00427 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99416 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00400 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47152 * 89.99510 * 18 16 14 20 20 H 1.48499 * 109.47277 * 209.99538 * 18 16 14 21 21 H 1.48502 * 109.47298 * 329.99925 * 18 16 14 22 22 C 1.34273 * 108.49246 * 359.75007 * 12 11 10 23 23 C 1.50691 * 126.29253 * 180.02562 * 22 12 11 24 24 C 1.38860 * 120.00303 * 0.27658 * 5 4 3 25 25 C 1.38187 * 120.07074 * 359.44870 * 24 5 4 26 26 C 1.38555 * 120.06980 * 0.55425 * 25 24 5 27 27 O 1.36067 * 120.00283 * 179.70087 * 26 25 24 28 28 H 1.08999 * 109.46795 * 60.00402 * 1 2 3 29 29 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47396 * 300.00389 * 1 2 3 31 31 H 1.07998 * 120.03827 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00257 * 326.93968 * 6 5 4 33 33 H 1.08006 * 125.98825 * 0.03312 * 10 9 7 34 34 H 1.08995 * 109.47449 * 29.97463 * 13 12 11 35 35 H 1.09000 * 109.46938 * 149.97712 * 13 12 11 36 36 H 0.97000 * 119.99567 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.47419 * 269.97897 * 23 22 12 38 38 H 1.09004 * 109.47482 * 29.97328 * 23 22 12 39 39 H 1.08997 * 109.47479 * 149.97338 * 23 22 12 40 40 H 1.07997 * 119.95741 * 179.72888 * 24 5 4 41 41 H 1.07994 * 119.96026 * 180.24913 * 25 24 5 42 42 H 0.96695 * 114.00220 * 270.01914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2928 2.3737 -0.0005 5 6 1.9254 3.6095 0.0000 6 7 1.1647 4.7854 0.0000 7 6 1.6173 5.8806 0.6420 8 8 2.6396 5.8220 1.2982 9 6 0.8732 7.1498 0.5487 10 6 -0.3192 7.3717 -0.1762 11 7 -0.6671 8.6178 -0.0092 12 7 0.2767 9.2459 0.8111 13 6 0.2468 10.6489 1.2314 14 6 0.9945 11.4896 0.2288 15 1 1.4472 11.0252 -0.6348 16 6 1.1018 12.8516 0.4145 17 7 0.5510 13.4171 1.4665 18 14 2.0292 13.8936 -0.8278 19 1 1.0914 14.3614 -1.8799 20 1 2.6280 15.0664 -0.1414 21 1 3.1056 13.0813 -1.4498 22 6 1.2141 8.3456 1.1485 23 6 2.4167 8.5946 2.0217 24 6 3.3122 3.6796 -0.0047 25 6 4.0642 2.5203 0.0015 26 6 3.4360 1.2853 0.0009 27 8 4.1778 0.1447 0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2142 2.3185 -0.0005 32 1 0.3104 4.8104 -0.4585 33 1 -0.8509 6.6375 -0.7633 34 1 -0.7872 10.9884 1.2910 35 1 0.7178 10.7453 2.2096 36 1 0.6261 14.3754 1.5970 37 1 3.2551 8.9144 1.4028 38 1 2.1835 9.3733 2.7479 39 1 2.6815 7.6764 2.5459 40 1 3.8035 4.6414 -0.0087 41 1 5.1426 2.5770 0.0019 42 1 4.3929 -0.1847 -0.8824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639603116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:47 Heat of formation + Delta-G solvation = -17.155643 kcal Electronic energy + Delta-G solvation = -27144.212179 eV Core-core repulsion = 23091.637477 eV Total energy + Delta-G solvation = -4052.574702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10716 -40.61083 -39.29713 -37.89395 -36.64478 -34.27528 -33.84016 -32.16379 -31.28133 -30.44964 -29.29367 -27.73521 -27.00846 -26.60663 -23.77345 -23.02031 -22.68371 -21.73375 -20.02457 -19.27615 -18.79660 -17.98053 -17.50598 -16.84740 -16.44832 -16.17564 -15.91385 -15.40413 -15.22620 -14.98462 -14.58170 -14.38532 -14.28198 -14.13657 -13.79814 -13.33447 -13.02009 -12.68496 -12.59622 -12.46937 -12.30672 -12.18084 -11.87502 -11.85210 -11.55766 -11.49380 -11.17659 -10.93457 -10.75862 -10.42670 -10.31625 -10.08759 -10.00105 -9.56246 -8.77768 -8.75984 -8.70080 -8.14847 -7.85831 -6.38691 -4.46894 0.96261 1.22181 2.04557 2.65966 2.88050 3.02256 3.14999 3.21682 3.25031 3.38403 3.40768 3.79850 4.08293 4.19963 4.60680 4.73283 4.85140 4.87932 4.97792 5.04277 5.11564 5.11815 5.17987 5.32437 5.39669 5.48211 5.63710 5.71838 5.81118 6.04106 6.14908 6.18909 6.29373 6.36971 6.46834 6.67345 6.70955 6.83868 6.97956 7.04424 7.43934 7.49268 7.58539 7.68588 7.71293 8.24180 8.34197 8.58196 9.20357 10.69572 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002283 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.197899 B =12262.968876 C =12809.938705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.122 3.878 4 C -0.229 4.229 5 C 0.197 3.803 6 N -0.677 5.677 7 C 0.605 3.395 8 O -0.532 6.532 9 C -0.337 4.337 10 C 0.059 3.941 11 N -0.292 5.292 12 N -0.312 5.312 13 C 0.250 3.750 14 C -0.541 4.541 15 H 0.065 0.935 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.909 3.091 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.172 3.828 23 C -0.095 4.095 24 C -0.142 4.142 25 C -0.084 4.084 26 C 0.048 3.952 27 O -0.487 6.487 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.409 0.591 33 H 0.176 0.824 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.270 0.730 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -22.825 -3.890 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.075 3.925 4 C -0.251 4.251 5 C 0.101 3.899 6 N -0.321 5.321 7 C 0.398 3.602 8 O -0.409 6.409 9 C -0.352 4.352 10 C -0.128 4.128 11 N -0.112 5.112 12 N -0.088 5.088 13 C 0.133 3.867 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.196 1.196 22 C 0.034 3.966 23 C -0.153 4.153 24 C -0.163 4.163 25 C -0.104 4.104 26 C 0.002 3.998 27 O -0.295 6.295 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.245 0.755 33 H 0.193 0.807 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.981 -21.626 -2.947 21.848 hybrid contribution 0.126 0.187 -1.270 1.290 sum 1.108 -21.439 -4.217 21.878 Atomic orbital electron populations 1.23091 0.78521 1.03965 1.01487 1.86148 1.21193 1.26118 1.88641 1.19092 0.91481 0.84289 0.97603 1.20797 1.00145 0.90641 1.13498 1.17466 0.90895 0.85095 0.96445 1.43430 1.23702 1.10074 1.54894 1.17423 0.83770 0.81969 0.77058 1.90729 1.24938 1.84566 1.40635 1.19512 1.04052 0.94292 1.17344 1.23737 0.95149 0.94692 0.99256 1.77166 1.14459 1.07144 1.12418 1.49424 1.15254 1.11234 1.32909 1.19894 1.00476 0.69696 0.96608 1.21227 1.35640 0.92229 1.08871 0.91641 1.24926 0.95336 0.97488 0.95893 1.69913 1.43411 1.11967 1.27321 0.86311 0.79882 0.79515 0.80762 1.20224 1.20744 1.19576 1.21494 0.92040 0.88270 0.94765 1.20606 0.92877 1.03725 0.98102 1.21066 0.91971 0.99542 1.03699 1.21130 1.00583 0.90273 0.98366 1.17669 0.86033 0.86586 1.09521 1.84931 1.71926 1.39678 1.32980 0.92591 0.88212 0.92521 0.84741 0.75474 0.80661 0.92416 0.92444 0.92049 0.89610 0.90674 0.88742 0.83816 0.84374 0.76452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.21 10.28 -34.31 -0.35 -3.56 16 3 C 0.12 1.37 6.70 -39.15 -0.26 1.11 16 4 C -0.23 -2.41 8.95 -39.27 -0.35 -2.76 16 5 C 0.20 2.40 6.28 -83.65 -0.53 1.87 16 6 N -0.68 -8.14 5.33 -10.81 -0.06 -8.19 16 7 C 0.61 9.45 7.55 -12.52 -0.09 9.35 16 8 O -0.53 -9.44 12.53 5.26 0.07 -9.38 16 9 C -0.34 -5.77 6.13 -105.07 -0.64 -6.41 16 10 C 0.06 0.96 11.51 -16.98 -0.20 0.76 16 11 N -0.29 -6.00 12.50 30.86 0.39 -5.62 16 12 N -0.31 -6.78 3.56 -57.78 -0.21 -6.98 16 13 C 0.25 6.05 5.97 -5.20 -0.03 6.02 16 14 C -0.54 -14.25 9.39 -34.44 -0.32 -14.57 16 15 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 18 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 C 0.17 3.34 7.01 -81.60 -0.57 2.77 16 23 C -0.10 -1.64 9.57 36.00 0.34 -1.29 16 24 C -0.14 -1.82 8.65 -39.37 -0.34 -2.16 16 25 C -0.08 -0.95 9.97 -39.48 -0.39 -1.34 16 26 C 0.05 0.55 6.72 -39.12 -0.26 0.29 16 27 O -0.49 -5.09 13.29 -34.56 -0.46 -5.55 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 31 H 0.13 1.08 6.29 -52.49 -0.33 0.75 16 32 H 0.41 3.66 7.79 -40.82 -0.32 3.35 16 33 H 0.18 1.94 7.51 -52.48 -0.39 1.55 16 34 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.06 1.38 7.02 -51.93 -0.36 1.01 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.27 7.05 -51.93 -0.37 0.90 16 39 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 40 H 0.14 2.02 6.42 -52.49 -0.34 1.69 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.38 2.16 9.06 45.56 0.41 2.57 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -32.59 362.85 -6.26 -38.86 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.07 Total: 6.49 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.76 Total: -3.53 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.86 Total: -44.22 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.75 Total: -18.49 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.59 -6.26 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639603116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.702 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds